Search of human proteins with 226823322

Search of human proteins with 226823322

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|226823322 methenyltetrahydrofolate synthetase domain
containing isoform 2 [Homo sapiens]
         (383 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|226823322 methenyltetrahydrofolate synthetase domain containi...   771   0.0  
gi|226823324 methenyltetrahydrofolate synthetase domain containi...   764   0.0  
gi|226823319 methenyltetrahydrofolate synthetase domain containi...   721   0.0  
gi|116875838 methenyltetrahydrofolate synthetase domain containi...   715   0.0  
gi|226823326 methenyltetrahydrofolate synthetase domain containi...   680   0.0  
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]      41   0.002
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ...    38   0.013
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]     37   0.023
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]        36   0.051
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [...    35   0.15 
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]    34   0.25 
gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo ...    33   0.33 
gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo ...    33   0.33 
gi|34222389 HpaII tiny fragments locus 9C [Homo sapiens]               33   0.33 
gi|51173878 HpaII tiny fragments locus 9C [Homo sapiens]               33   0.33 
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    33   0.43 
gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2 [...    33   0.43 
gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Ho...    33   0.43 
gi|139394599 hypermethylated in cancer 2 [Homo sapiens]                33   0.43 
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...    33   0.56 
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...    33   0.56 
gi|4502271 Na+/K+ -ATPase alpha 2 subunit proprotein [Homo sapiens]    33   0.56 
gi|14670268 RD RNA-binding protein [Homo sapiens]                      33   0.56 
gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo s...    32   0.73 
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]               32   0.96 
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]               32   0.96 
gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens]      32   0.96 
gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens]      32   0.96 
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap...    32   0.96 
gi|226495417 coiled-coil domain containing 102A [Homo sapiens]         32   1.3  

>gi|226823322 methenyltetrahydrofolate synthetase domain containing
           isoform 2 [Homo sapiens]
          Length = 383

 Score =  771 bits (1990), Expect = 0.0
 Identities = 383/383 (100%), Positives = 383/383 (100%)

Query: 1   MEPRAVGVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKGASHAAEQLPRLQAFKTAR 60
           MEPRAVGVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKGASHAAEQLPRLQAFKTAR
Sbjct: 1   MEPRAVGVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKGASHAAEQLPRLQAFKTAR 60

Query: 61  TIKVNPDAPQKSARFFVLESKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVR 120
           TIKVNPDAPQKSARFFVLESKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVR
Sbjct: 61  TIKVNPDAPQKSARFFVLESKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVR 120

Query: 121 NYSVPIGLDSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTI 180
           NYSVPIGLDSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTI
Sbjct: 121 NYSVPIGLDSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTI 180

Query: 181 VHDCQVVDIPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILR 240
           VHDCQVVDIPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILR
Sbjct: 181 VHDCQVVDIPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILR 240

Query: 241 SLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGE 300
           SLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGE
Sbjct: 241 SLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGE 300

Query: 301 GAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS 360
           GAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS
Sbjct: 301 GAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS 360

Query: 361 CLQGLRLGTDTLRVALARQQRDK 383
           CLQGLRLGTDTLRVALARQQRDK
Sbjct: 361 CLQGLRLGTDTLRVALARQQRDK 383


>gi|226823324 methenyltetrahydrofolate synthetase domain containing
           isoform 4 [Homo sapiens]
          Length = 382

 Score =  764 bits (1974), Expect = 0.0
 Identities = 382/383 (99%), Positives = 382/383 (99%), Gaps = 1/383 (0%)

Query: 1   MEPRAVGVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKGASHAAEQLPRLQAFKTAR 60
           MEPRA GVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKGASHAAEQLPRLQAFKTAR
Sbjct: 1   MEPRA-GVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKGASHAAEQLPRLQAFKTAR 59

Query: 61  TIKVNPDAPQKSARFFVLESKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVR 120
           TIKVNPDAPQKSARFFVLESKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVR
Sbjct: 60  TIKVNPDAPQKSARFFVLESKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVR 119

Query: 121 NYSVPIGLDSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTI 180
           NYSVPIGLDSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTI
Sbjct: 120 NYSVPIGLDSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTI 179

Query: 181 VHDCQVVDIPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILR 240
           VHDCQVVDIPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILR
Sbjct: 180 VHDCQVVDIPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILR 239

Query: 241 SLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGE 300
           SLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGE
Sbjct: 240 SLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGE 299

Query: 301 GAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS 360
           GAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS
Sbjct: 300 GAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS 359

Query: 361 CLQGLRLGTDTLRVALARQQRDK 383
           CLQGLRLGTDTLRVALARQQRDK
Sbjct: 360 CLQGLRLGTDTLRVALARQQRDK 382


>gi|226823319 methenyltetrahydrofolate synthetase domain containing
           isoform 1 [Homo sapiens]
          Length = 383

 Score =  721 bits (1861), Expect = 0.0
 Identities = 357/383 (93%), Positives = 365/383 (95%)

Query: 1   MEPRAVGVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKGASHAAEQLPRLQAFKTAR 60
           MEPRAVGVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKG+  A + +  L  F   +
Sbjct: 1   MEPRAVGVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKGSYLACQNIKDLDVFARTQ 60

Query: 61  TIKVNPDAPQKSARFFVLESKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVR 120
            +KV+PD P +  R  VL+SKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVR
Sbjct: 61  EVKVDPDKPLEGVRLLVLQSKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVR 120

Query: 121 NYSVPIGLDSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTI 180
           NYSVPIGLDSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTI
Sbjct: 121 NYSVPIGLDSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTI 180

Query: 181 VHDCQVVDIPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILR 240
           VHDCQVVDIPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILR
Sbjct: 181 VHDCQVVDIPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILR 240

Query: 241 SLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGE 300
           SLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGE
Sbjct: 241 SLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGE 300

Query: 301 GAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS 360
           GAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS
Sbjct: 301 GAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS 360

Query: 361 CLQGLRLGTDTLRVALARQQRDK 383
           CLQGLRLGTDTLRVALARQQRDK
Sbjct: 361 CLQGLRLGTDTLRVALARQQRDK 383


>gi|116875838 methenyltetrahydrofolate synthetase domain containing
           isoform 3 [Homo sapiens]
          Length = 382

 Score =  715 bits (1845), Expect = 0.0
 Identities = 356/383 (92%), Positives = 364/383 (95%), Gaps = 1/383 (0%)

Query: 1   MEPRAVGVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKGASHAAEQLPRLQAFKTAR 60
           MEPRA GVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKG+  A + +  L  F   +
Sbjct: 1   MEPRA-GVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKGSYLACQNIKDLDVFARTQ 59

Query: 61  TIKVNPDAPQKSARFFVLESKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVR 120
            +KV+PD P +  R  VL+SKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVR
Sbjct: 60  EVKVDPDKPLEGVRLLVLQSKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVR 119

Query: 121 NYSVPIGLDSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTI 180
           NYSVPIGLDSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTI
Sbjct: 120 NYSVPIGLDSRVLVDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTI 179

Query: 181 VHDCQVVDIPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILR 240
           VHDCQVVDIPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILR
Sbjct: 180 VHDCQVVDIPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILR 239

Query: 241 SLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGE 300
           SLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGE
Sbjct: 240 SLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGE 299

Query: 301 GAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS 360
           GAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS
Sbjct: 300 GAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVS 359

Query: 361 CLQGLRLGTDTLRVALARQQRDK 383
           CLQGLRLGTDTLRVALARQQRDK
Sbjct: 360 CLQGLRLGTDTLRVALARQQRDK 382


>gi|226823326 methenyltetrahydrofolate synthetase domain containing
           isoform 5 [Homo sapiens]
          Length = 363

 Score =  680 bits (1754), Expect = 0.0
 Identities = 337/363 (92%), Positives = 345/363 (95%)

Query: 21  MESQNLADFPRPVHHRIPNFKGASHAAEQLPRLQAFKTARTIKVNPDAPQKSARFFVLES 80
           MESQNLADFPRPVHHRIPNFKG+  A + +  L  F   + +KV+PD P +  R  VL+S
Sbjct: 1   MESQNLADFPRPVHHRIPNFKGSYLACQNIKDLDVFARTQEVKVDPDKPLEGVRLLVLQS 60

Query: 81  KKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVRNYSVPIGLDSRVLVDLVVVG 140
           KKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVRNYSVPIGLDSRVLVDLVVVG
Sbjct: 61  KKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVRNYSVPIGLDSRVLVDLVVVG 120

Query: 141 SVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTIVHDCQVVDIPEELVEEHDIT 200
           SVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTIVHDCQVVDIPEELVEEHDIT
Sbjct: 121 SVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTIVHDCQVVDIPEELVEEHDIT 180

Query: 201 VDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILRSLRAREQQAGKDVTLQGEHQ 260
           VDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILRSLRAREQQAGKDVTLQGEHQ
Sbjct: 181 VDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILRSLRAREQQAGKDVTLQGEHQ 240

Query: 261 HLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGEGAPLAADVYVGNLPGDARVS 320
           HLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGEGAPLAADVYVGNLPGDARVS
Sbjct: 241 HLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGEGAPLAADVYVGNLPGDARVS 300

Query: 321 DLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 380
           DLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ
Sbjct: 301 DLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 360

Query: 381 RDK 383
           RDK
Sbjct: 361 RDK 363


>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
          Length = 164

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 300 EGAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTW--QGPRRRAFLHYPDSAAAQQ 357
           +  PL   VYVGNL  +   ++L+RA    G  PLR  W  + P   AF+ + D   A  
Sbjct: 4   DSCPLDCKVYVGNLGNNGNKTELERAFGYYG--PLRSVWVARNPPGFAFVEFEDPRDAAD 61

Query: 358 AVSCLQGLRLGTDTLRVALARQQR 381
           AV  L G  L    +RV L+  ++
Sbjct: 62  AVRELDGRTLCGCRVRVELSNGEK 85


>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
           64kDa, tau variant [Homo sapiens]
          Length = 616

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 308 VYVGNLPGDARVSDLKRALRELGS-VPLRLTWQ----GPRRRAFLHYPDSAAAQQAVSCL 362
           V+VGN+P +A    LK    E+GS V  RL +      P+   F  Y D   A  A+  L
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 363 QGLRLGTDTLRVALARQQRDK 383
            G       LRV  A  +++K
Sbjct: 78  NGREFSGRALRVDNAASEKNK 98


>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
          Length = 238

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 308 VYVGNLPGDARVSDLKRALRELGSVPLRLTW--QGPRRRAFLHYPDSAAAQQAVSCLQGL 365
           VYVGNL   A   +L+RA    G  PLR  W  + P   AF+ + D   A+ AV  L G 
Sbjct: 13  VYVGNLGTGAGKGELERAFSYYG--PLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70

Query: 366 RLGTDTLRVALA 377
            +    +RV L+
Sbjct: 71  VICGSRVRVELS 82


>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
          Length = 577

 Score = 36.2 bits (82), Expect = 0.051
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 308 VYVGNLPGDARVSDLKRALRELGS-VPLRLTWQ----GPRRRAFLHYPDSAAAQQAVSCL 362
           V+VGN+P +A    LK    E+G  V  RL +      P+   F  Y D   A  A+  L
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 363 QGLRLGTDTLRVALARQQRDK 383
            G       LRV  A  +++K
Sbjct: 78  NGREFSGRALRVDNAASEKNK 98


>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
            sapiens]
          Length = 1584

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 195  EEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILRSLRAREQQ--AGKD 252
            +E  +   Y++ PT   AT   RPKP     + I ++ M +  ++    A E    A   
Sbjct: 1337 QEKALDTSYVILPT---ATATLRPKPKEEPKYSIHIDQMPQTRLIHLSTAPEASLPARSP 1393

Query: 253  VTLQGEHQHLPE-PGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGEGAPLA 305
             + Q      PE P  Q   P      PP  P P   ++E AP S    G P A
Sbjct: 1394 PSRQPPSGGPPEAPPAQPPPPPPPPPPPPQQPLPPPPNLEPAPPSLGDPGEPAA 1447


>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
          Length = 282

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 25/114 (21%)

Query: 273 LSVGRRPPDTPGPETNSMEAAPGSPPGEGAPLAADVYVGNLPGDARVSDLKRALRELGSV 332
           +S GR PPD  G  T                    + V NL        L+R   + G V
Sbjct: 1   MSCGRPPPDVDGMIT--------------------LKVDNLTYRTSPDSLRRVFEKYGRV 40

Query: 333 -----PLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 381
                P     + PR  AF+ + D   AQ A + + G  L    LRV +AR  R
Sbjct: 41  GDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94


>gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo
           sapiens]
          Length = 319

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 263 PEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPG----EGAPLAADVYVGNLPGDAR 318
           PEPGCQ +  +  G  P     PET    A+   P G    E  P   D  VG  P D +
Sbjct: 245 PEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGK-PEDGK 303

Query: 319 VSDLKRALRELGSVPLRLTWQGP 341
               +RALR     P+R  W  P
Sbjct: 304 ----ERALR----APVRGPWLRP 318


>gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo
           sapiens]
          Length = 319

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 263 PEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPG----EGAPLAADVYVGNLPGDAR 318
           PEPGCQ +  +  G  P     PET    A+   P G    E  P   D  VG  P D +
Sbjct: 245 PEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGK-PEDGK 303

Query: 319 VSDLKRALRELGSVPLRLTWQGP 341
               +RALR     P+R  W  P
Sbjct: 304 ----ERALR----APVRGPWLRP 318


>gi|34222389 HpaII tiny fragments locus 9C [Homo sapiens]
          Length = 625

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 294 PGSPPGEGAPLAADVYVG--------NLPGDARVSDLKRALRELGSVPLRLTWQGPRRRA 345
           PG  PG  + +  D++          N+P  A  SD++R L   G  P +    G    A
Sbjct: 53  PGPQPGLYSYIRDDLFTSEIFKLELQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCA 112

Query: 346 FLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQRD 382
           F+ +  +A   +A+  L G       L V LAR + D
Sbjct: 113 FVTFRSAAERDKALRVLHGALWKGRPLSVRLARPKAD 149


>gi|51173878 HpaII tiny fragments locus 9C [Homo sapiens]
          Length = 625

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 294 PGSPPGEGAPLAADVYVG--------NLPGDARVSDLKRALRELGSVPLRLTWQGPRRRA 345
           PG  PG  + +  D++          N+P  A  SD++R L   G  P +    G    A
Sbjct: 53  PGPQPGLYSYIRDDLFTSEIFKLELQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCA 112

Query: 346 FLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQRD 382
           F+ +  +A   +A+  L G       L V LAR + D
Sbjct: 113 FVTFRSAAERDKALRVLHGALWKGRPLSVRLARPKAD 149


>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 1124

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 261 HLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAP--------GSPPGEGAP 303
           HL  P C    PL     P  TP PET S  A P         SPP +G P
Sbjct: 557 HLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLP 607



 Score = 29.3 bits (64), Expect = 6.2
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)

Query: 263 PEPGCQQTVPLSVGRRPPDTPGPETN------SMEAAPGSPP 298
           P P    T  L   RRPP TPGP+T+      ++  APG PP
Sbjct: 844 PSPPASPT--LQAPRRPP-TPGPDTSVSGPRLTLALAPGPPP 882


>gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2
           [Homo sapiens]
          Length = 201

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 308 VYVGNLPGDARVSDLKRALRELGS---VPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQG 364
           +YVGNLP D R  D++    + G+   + L+    GP   AF+ + D   A+ AV    G
Sbjct: 18  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGP-PFAFVEFEDPRDAEDAVYGRDG 76

Query: 365 LRLGTDTLRVALARQQR 381
                  LRV   R  R
Sbjct: 77  YDYDGYRLRVEFPRSGR 93


>gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Homo
           sapiens]
          Length = 248

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 308 VYVGNLPGDARVSDLKRALRELGS---VPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQG 364
           +YVGNLP D R  D++    + G+   + L+    GP   AF+ + D   A+ AV    G
Sbjct: 18  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGP-PFAFVEFEDPRDAEDAVYGRDG 76

Query: 365 LRLGTDTLRVALARQQR 381
                  LRV   R  R
Sbjct: 77  YDYDGYRLRVEFPRSGR 93


>gi|139394599 hypermethylated in cancer 2 [Homo sapiens]
          Length = 615

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)

Query: 266 GCQQTVPLSVGRR----PPDTPGPETNSMEAAP------GSPPGEGAPLAAD 307
           GC+Q + L + ++    PP TPGP     +AA       GSPP   AP  A+
Sbjct: 240 GCEQELGLDLSKKSPPLPPATPGPHLTPDDAAQLSDSQHGSPPAASAPPVAN 291


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 245 REQQAGKDVTLQGEHQHLPEPGCQQTV-PLSVGRRPPDTPGPETNSMEA-------APGS 296
           ++QQ  +    Q   Q  P+P  QQ   P  V    P  PGPE +           APG 
Sbjct: 226 QQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGG 285

Query: 297 PPGEGAPLAADVYVGNLPG 315
            P    P AA      +PG
Sbjct: 286 RPSPAPPAAAQPPAAAVPG 304


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 245 REQQAGKDVTLQGEHQHLPEPGCQQTV-PLSVGRRPPDTPGPETNSMEA-------APGS 296
           ++QQ  +    Q   Q  P+P  QQ   P  V    P  PGPE +           APG 
Sbjct: 226 QQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGG 285

Query: 297 PPGEGAPLAADVYVGNLPG 315
            P    P AA      +PG
Sbjct: 286 RPSPAPPAAAQPPAAAVPG 304


>gi|4502271 Na+/K+ -ATPase alpha 2 subunit proprotein [Homo sapiens]
          Length = 1020

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 16/138 (11%)

Query: 87  PTPRLR-TGLFNKITPPPGATKDILRKCATSQGVRNYSVPIGLDSRVLVDLVVVGSVAVS 145
           PT +L   GL + I PP  A  D + KC  S G++   + +  D  +    +  G   +S
Sbjct: 576 PTEKLCFVGLMSMIDPPRAAVPDAVGKC-RSAGIK--VIMVTGDHPITAKAIAKGVGIIS 632

Query: 146 EKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTIVHDCQVVDIP----EELVEEHDITV 201
           E        E   D+   + + M  V+       +VH   + D+     +E+++ H   V
Sbjct: 633 E------GNETVEDIAARLNIPMSQVNPREAKACVVHGSDLKDMTSEQLDEILKNHTEIV 686

Query: 202 DYILTPTR--VIATGCKR 217
               +P +  +I  GC+R
Sbjct: 687 FARTSPQQKLIIVEGCQR 704


>gi|14670268 RD RNA-binding protein [Homo sapiens]
          Length = 380

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 322 LKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 380
           L+ A    G++ + L+   PR  AF+ Y    +A QAV+ L G ++ +  L+V +AR+Q
Sbjct: 276 LRGAFSPFGNI-IDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 333


>gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo
           sapiens]
          Length = 282

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 255 LQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPGEGAPLAADVYVGNLP 314
           + G+  ++P PG      L+ G+ PP    P+       P + P    P    +++ NLP
Sbjct: 157 MPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLP 216

Query: 315 GDARVSDLKRALREL-GSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRL-GTDTL 372
            +     L     +  G   +RL   G    AF+ + +   A  A   LQG ++   + +
Sbjct: 217 EETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAM 275

Query: 373 RVALARQ 379
           +++ A++
Sbjct: 276 KISFAKK 282


>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
          Length = 367

 Score = 32.0 bits (71), Expect = 0.96
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 346 FLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 378
           F++Y D   A +A++ L GL+L T T++V+ AR
Sbjct: 84  FVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR 116


>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
          Length = 360

 Score = 32.0 bits (71), Expect = 0.96
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 346 FLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 378
           F++Y D   A +A++ L GL+L T T++V+ AR
Sbjct: 84  FVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR 116


>gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens]
          Length = 644

 Score = 32.0 bits (71), Expect = 0.96
 Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 20/112 (17%)

Query: 254 TLQGEHQHLPEPGCQQTVPLSVGRRPPDTPGPETNSME-AAPGSPPGEGAPLAADVYVGN 312
           TLQG+    P        P      PPD PG E+ ++  + P +P GE  P  A      
Sbjct: 22  TLQGQLPGAP--------PAQRAGSPPDAPGSESPALACSTPATPSGEDPPARAAPIAPR 73

Query: 313 LPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQG 364
            P   R   L+RA        L L  +G RRR F    +   A+   S  +G
Sbjct: 74  PPARPR---LERA--------LSLDDKGWRRRRFRGSQEDLEARNGTSPSRG 114


>gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens]
          Length = 221

 Score = 32.0 bits (71), Expect = 0.96
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 308 VYVGNLPGDARVSDLKRALRELGSV-PLRL-TWQGPRRRAFLHYPDSAAAQQAVSCLQGL 365
           +YVGNLP D R  DL+    + G +  + L    G    AF+ + D   A+ A+    G 
Sbjct: 16  IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75

Query: 366 RLGTDTLRVALAR 378
             G   LRV   R
Sbjct: 76  DYGQCRLRVEFPR 88


>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
           sapiens]
          Length = 735

 Score = 32.0 bits (71), Expect = 0.96
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 17/71 (23%)

Query: 280 PDTPGPETNSME--------AAPGSPPGEGAPLAADVYVGNLPGDARVSDLKRALRELGS 331
           P+ PGP+  S E        AAP SPP + +   +       PG AR   +K  +++L  
Sbjct: 125 PEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKS-------PGPARRLSIK--MKKLPE 175

Query: 332 VPLRLTWQGPR 342
           +  RL+ +GPR
Sbjct: 176 LRRRLSLRGPR 186


>gi|226495417 coiled-coil domain containing 102A [Homo sapiens]
          Length = 550

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 15/170 (8%)

Query: 225 WFKISLEMMEKIPILRSLRAREQQAGKDVT--------LQGEHQHLPEPGCQQTVPLSVG 276
           W K+  E       +R LR R     K++          QGE +       +      V 
Sbjct: 108 WSKVRAERNRAREEVRQLRQRLDALTKELAGARRERQEAQGECEARGRELARLRGARGVA 167

Query: 277 RRPPDTPGPETNS---MEAAPGSPPGEGAPLAADVYVGNLPGDARVSDLKRALRELGSVP 333
            +  D P PE       +     PPG       +  + ++P ++   D   A R LG+  
Sbjct: 168 DQTRDGPEPEAEREPVRDVGSERPPGSQELELVESLLKSMPEESE--DCWEA-RSLGAGG 224

Query: 334 LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQRDK 383
            R +  G + R+ L + D+AA ++  S L  LRL  D  +  L +++ DK
Sbjct: 225 PRGS-SGRQERSRLPWEDTAATEEEASKLTALRLRLDESQKVLLKEREDK 273


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,775,103
Number of Sequences: 37866
Number of extensions: 897213
Number of successful extensions: 4176
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 4027
Number of HSP's gapped (non-prelim): 236
length of query: 383
length of database: 18,247,518
effective HSP length: 104
effective length of query: 279
effective length of database: 14,309,454
effective search space: 3992337666
effective search space used: 3992337666
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.