Guide to the Human Genome
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Search of human proteins with 226371643

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|226371643 leprecan 1 isoform 2 [Homo sapiens]
         (697 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|226371643 leprecan 1 isoform 2 [Homo sapiens]                     1415   0.0  
gi|186928835 leprecan 1 isoform 1 [Homo sapiens]                     1393   0.0  
gi|27764882 leprecan-like 1 isoform a [Homo sapiens]                  655   0.0  
gi|28466983 leprecan-like 2 [Homo sapiens]                            550   e-156
gi|197313662 leprecan-like 1 isoform b [Homo sapiens]                 531   e-151
gi|5453601 cartilage associated protein precursor [Homo sapiens]      214   2e-55
gi|5454038 synaptonemal complex protein SC65 [Homo sapiens]           187   2e-47
gi|239753578 PREDICTED: similar to cartilage associated protein ...    75   3e-13
gi|13375891 hypothetical protein LOC79701 isoform 1 [Homo sapiens]     57   6e-08
gi|33589818 prolyl 4-hydroxylase, alpha III subunit precursor [H...    37   0.062
gi|55769587 probable nucleolar complex protein 14 [Homo sapiens]       35   0.24 
gi|13489073 egl nine homolog 1 [Homo sapiens]                          35   0.31 
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap...    33   1.2  
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...    33   1.2  
gi|47519562 reticulon 4 isoform E [Homo sapiens]                       32   2.6  
gi|24431935 reticulon 4 isoform A [Homo sapiens]                       32   2.6  
gi|56549696 E1A binding protein p400 [Homo sapiens]                    32   2.6  
gi|83921609 hypothetical protein LOC127254 [Homo sapiens]              32   2.6  
gi|145701012 EGL nine (C.elegans) homolog 2 [Homo sapiens]             31   3.4  
gi|16604260 EGL nine (C.elegans) homolog 2 [Homo sapiens]              31   3.4  
gi|63252886 prolyl 4-hydroxylase, alpha I subunit isoform 1 prec...    31   4.4  
gi|217272851 prolyl 4-hydroxylase, alpha I subunit isoform 3 pre...    31   4.4  
gi|217272849 prolyl 4-hydroxylase, alpha I subunit isoform 2 pre...    31   4.4  
gi|63252888 prolyl 4-hydroxylase, alpha I subunit isoform 2 prec...    31   4.4  
gi|11545787 egl nine homolog 3 [Homo sapiens]                          30   5.8  
gi|9789865 eukaryotic translation initiation factor 4E nuclear i...    30   5.8  
gi|157671947 hypothetical protein LOC79974 isoform 2 [Homo sapiens]    30   7.6  
gi|157671945 hypothetical protein LOC79974 isoform 1 [Homo sapiens]    30   7.6  
gi|5729734 activator of S phase kinase [Homo sapiens]                  30   9.9  
gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens]        30   9.9  

>gi|226371643 leprecan 1 isoform 2 [Homo sapiens]
          Length = 697

 Score = 1415 bits (3662), Expect = 0.0
 Identities = 697/697 (100%), Positives = 697/697 (100%)

Query: 1   MAVRALKLLTTLLAVVAAASQAEVESEAGWGMVTPDLLFAEGTAAYARGDWPGVVLSMER 60
           MAVRALKLLTTLLAVVAAASQAEVESEAGWGMVTPDLLFAEGTAAYARGDWPGVVLSMER
Sbjct: 1   MAVRALKLLTTLLAVVAAASQAEVESEAGWGMVTPDLLFAEGTAAYARGDWPGVVLSMER 60

Query: 61  ALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALRDLSFFGGLLRRAACL 120
           ALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALRDLSFFGGLLRRAACL
Sbjct: 61  ALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALRDLSFFGGLLRRAACL 120

Query: 121 RRCLGPPAAHSLSEEMELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQ 180
           RRCLGPPAAHSLSEEMELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQ
Sbjct: 121 RRCLGPPAAHSLSEEMELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQ 180

Query: 181 QNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYE 240
           QNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYE
Sbjct: 181 QNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYE 240

Query: 241 ECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFEDFL 300
           ECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFEDFL
Sbjct: 241 ECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFEDFL 300

Query: 301 PSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTRSIGPRE 360
           PSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTRSIGPRE
Sbjct: 301 PSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTRSIGPRE 360

Query: 361 SAKEYRQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAVRISQE 420
           SAKEYRQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAVRISQE
Sbjct: 361 SAKEYRQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAVRISQE 420

Query: 421 IGNLMKEIETLVEEKTKESLDVSRLTREGGPLLYEGISLTMNSKLLNGSQRVVMDGVISD 480
           IGNLMKEIETLVEEKTKESLDVSRLTREGGPLLYEGISLTMNSKLLNGSQRVVMDGVISD
Sbjct: 421 IGNLMKEIETLVEEKTKESLDVSRLTREGGPLLYEGISLTMNSKLLNGSQRVVMDGVISD 480

Query: 481 HECQELQRLTNVAATSGDGYRGQTSPHTPNEKFYGVTVFKALKLGQEGKVPLQSAHLYYN 540
           HECQELQRLTNVAATSGDGYRGQTSPHTPNEKFYGVTVFKALKLGQEGKVPLQSAHLYYN
Sbjct: 481 HECQELQRLTNVAATSGDGYRGQTSPHTPNEKFYGVTVFKALKLGQEGKVPLQSAHLYYN 540

Query: 541 VTEKVRRIMESYFRLDTPLYFSYSHLVCRTAIEEVQAERKDDSHPVHVDNCILNAETLVC 600
           VTEKVRRIMESYFRLDTPLYFSYSHLVCRTAIEEVQAERKDDSHPVHVDNCILNAETLVC
Sbjct: 541 VTEKVRRIMESYFRLDTPLYFSYSHLVCRTAIEEVQAERKDDSHPVHVDNCILNAETLVC 600

Query: 601 VKEPPAYTFRDYSAILYLNGDFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHG 660
           VKEPPAYTFRDYSAILYLNGDFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHG
Sbjct: 601 VKEPPAYTFRDYSAILYLNGDFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHG 660

Query: 661 VKAVTRGQRCAIALWFTLDPRHSERVRAARAGQGAGR 697
           VKAVTRGQRCAIALWFTLDPRHSERVRAARAGQGAGR
Sbjct: 661 VKAVTRGQRCAIALWFTLDPRHSERVRAARAGQGAGR 697


>gi|186928835 leprecan 1 isoform 1 [Homo sapiens]
          Length = 736

 Score = 1393 bits (3606), Expect = 0.0
 Identities = 686/687 (99%), Positives = 686/687 (99%)

Query: 1   MAVRALKLLTTLLAVVAAASQAEVESEAGWGMVTPDLLFAEGTAAYARGDWPGVVLSMER 60
           MAVRALKLLTTLLAVVAAASQAEVESEAGWGMVTPDLLFAEGTAAYARGDWPGVVLSMER
Sbjct: 1   MAVRALKLLTTLLAVVAAASQAEVESEAGWGMVTPDLLFAEGTAAYARGDWPGVVLSMER 60

Query: 61  ALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALRDLSFFGGLLRRAACL 120
           ALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALRDLSFFGGLLRRAACL
Sbjct: 61  ALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALRDLSFFGGLLRRAACL 120

Query: 121 RRCLGPPAAHSLSEEMELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQ 180
           RRCLGPPAAHSLSEEMELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQ
Sbjct: 121 RRCLGPPAAHSLSEEMELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQ 180

Query: 181 QNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYE 240
           QNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYE
Sbjct: 181 QNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYE 240

Query: 241 ECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFEDFL 300
           ECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFEDFL
Sbjct: 241 ECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFEDFL 300

Query: 301 PSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTRSIGPRE 360
           PSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTRSIGPRE
Sbjct: 301 PSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTRSIGPRE 360

Query: 361 SAKEYRQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAVRISQE 420
           SAKEYRQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAVRISQE
Sbjct: 361 SAKEYRQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAVRISQE 420

Query: 421 IGNLMKEIETLVEEKTKESLDVSRLTREGGPLLYEGISLTMNSKLLNGSQRVVMDGVISD 480
           IGNLMKEIETLVEEKTKESLDVSRLTREGGPLLYEGISLTMNSKLLNGSQRVVMDGVISD
Sbjct: 421 IGNLMKEIETLVEEKTKESLDVSRLTREGGPLLYEGISLTMNSKLLNGSQRVVMDGVISD 480

Query: 481 HECQELQRLTNVAATSGDGYRGQTSPHTPNEKFYGVTVFKALKLGQEGKVPLQSAHLYYN 540
           HECQELQRLTNVAATSGDGYRGQTSPHTPNEKFYGVTVFKALKLGQEGKVPLQSAHLYYN
Sbjct: 481 HECQELQRLTNVAATSGDGYRGQTSPHTPNEKFYGVTVFKALKLGQEGKVPLQSAHLYYN 540

Query: 541 VTEKVRRIMESYFRLDTPLYFSYSHLVCRTAIEEVQAERKDDSHPVHVDNCILNAETLVC 600
           VTEKVRRIMESYFRLDTPLYFSYSHLVCRTAIEEVQAERKDDSHPVHVDNCILNAETLVC
Sbjct: 541 VTEKVRRIMESYFRLDTPLYFSYSHLVCRTAIEEVQAERKDDSHPVHVDNCILNAETLVC 600

Query: 601 VKEPPAYTFRDYSAILYLNGDFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHG 660
           VKEPPAYTFRDYSAILYLNGDFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHG
Sbjct: 601 VKEPPAYTFRDYSAILYLNGDFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHG 660

Query: 661 VKAVTRGQRCAIALWFTLDPRHSERVR 687
           VKAVTRGQRCAIALWFTLDPRHSER R
Sbjct: 661 VKAVTRGQRCAIALWFTLDPRHSERDR 687


>gi|27764882 leprecan-like 1 isoform a [Homo sapiens]
          Length = 708

 Score =  655 bits (1691), Expect = 0.0
 Identities = 336/661 (50%), Positives = 435/661 (65%), Gaps = 30/661 (4%)

Query: 36  DLLFAEGTAAYARGDWPGVVLSMERALRSRAALRALRLRCRTQCAADFPWELDPDWSPSP 95
           DLL+A G AAY  GD+   V  +E ALRS   LR +R RC   CAA  P  L P   P P
Sbjct: 45  DLLYASGAAAYYSGDYERAVRDLEAALRSHRRLREIRTRCARHCAARHP--LPP---PPP 99

Query: 96  AQASGAAALRDLSFFGGLLRRAACLRRCL-----GPPAAHSLSEEMELEFRKRSPYNYLQ 150
            +  GA    +L  F  LL RA C R C      GP + H +SE++  +F++R PYNYLQ
Sbjct: 100 GEGPGA----ELPLFRSLLGRARCYRSCETQRLGGPASRHRVSEDVRSDFQRRVPYNYLQ 155

Query: 151 VAYFKINKLEKAVAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFR 210
            AY K+N+LEKAV AAHTFFV NPEHMEMQQN++ Y+  +GV+     D E +PHM+ + 
Sbjct: 156 RAYIKLNQLEKAVEAAHTFFVANPEHMEMQQNIENYRATAGVEALQLVDREAKPHMESYN 215

Query: 211 LGVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITD 270
            GV+ Y  +  + A+ H E AL+EYFV   ECR LCEGP  ++ Y YL Y A L++AI D
Sbjct: 216 AGVKHYEADDFEMAIRHFEQALREYFVEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIAD 275

Query: 271 HYIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLF 330
           HY+QVL C+  CV ELA+ P R  P E+FLP HY+YLQFAYY +G Y +A+ECAK YLL 
Sbjct: 276 HYMQVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLC 335

Query: 331 FPNDEVMNQNLAYYAAMLGEE-HTRSIGPRESAKEYRQRSLLEKELLFFAYDVFGIPFVD 389
            P+DE +  N+ YY ++L +     SI  RE    + +R  LE EL+  A +  G  + +
Sbjct: 336 HPDDEDVLDNVDYYESLLDDSIDPASIEAREDLTMFVKRHKLESELIKSAAEGLGFSYTE 395

Query: 390 PDSWTPEEVIPKRLQEKQKSERETAVRISQEIGNLMKEIETLVEEKTKESLDVSRLTREG 449
           P+ W             +   R+   R+   +     E+      K K S  + R  REG
Sbjct: 396 PNYWI------------RYGGRQDENRVPSGVNVEGAEVHGFSMGK-KLSPKIDRDLREG 442

Query: 450 GPLLYEGISLTMNSKLLNGSQRVVMDGVISDHECQELQRLTNVAATSGDGYRGQTSPHTP 509
           GPLLYE I+   NS+ LNG+QRV++D V+S+ +C+EL  + +     GDGYRG+TSPHTP
Sbjct: 443 GPLLYENITFVYNSEQLNGTQRVLLDNVLSEEQCRELHSVASGIMLVGDGYRGKTSPHTP 502

Query: 510 NEKFYGVTVFKALKLGQEGKVPLQSAHLYYNVTEKVRRIMESYFRLDTPLYFSYSHLVCR 569
           NEKF G TV KALK G EG+VPL+SA L+Y+++EK RRI+ESYF L++ LYFSY+H+VCR
Sbjct: 503 NEKFEGATVLKALKSGYEGRVPLKSARLFYDISEKARRIVESYFMLNSTLYFSYTHMVCR 562

Query: 570 TAIEEVQAERKDDSHPVHVDNCILNAETLVCVKEPPAYTFRDYSAILYLNGDFDGGNFYF 629
           TA+   Q  R D SHP+H DNC+L+ E   C KEPPAYTFRDYSA+LY+N DF+GG F F
Sbjct: 563 TALSGQQDRRNDLSHPIHADNCLLDPEANECWKEPPAYTFRDYSALLYMNDDFEGGEFIF 622

Query: 630 TELDAKTVTAEVQPQCGRAVGFSSGTENPHGVKAVTRGQRCAIALWFTLDP--RHSERVR 687
           TE+DAKTVTA ++P+CGR + FSSG ENPHGVKAVT+G+RCA+ALWFTLDP  R  ER++
Sbjct: 623 TEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAVTKGKRCAVALWFTLDPLYRELERIQ 682

Query: 688 A 688
           A
Sbjct: 683 A 683


>gi|28466983 leprecan-like 2 [Homo sapiens]
          Length = 736

 Score =  550 bits (1418), Expect = e-156
 Identities = 306/671 (45%), Positives = 401/671 (59%), Gaps = 45/671 (6%)

Query: 35  PDLLFAEGTAAYARGDWPGVVLSMERALRSRAALRALRLRCRTQCAAD----FPWEL--- 87
           PDLL+A+G  AYA G W   V  +  ALRS+AAL  +RL C   CAAD     P  L   
Sbjct: 37  PDLLYADGLRAYAAGAWAPAVALLREALRSQAALGRVRLDCGASCAADPGAALPAVLLGA 96

Query: 88  -DPDWSPSPAQASGAAALRDLSFFGGLLRRAACLRRC----LGPPAAHSLSEEMELE--F 140
            +PD  P P Q S    L         LRRA CL +C    LGP  A  L     L   F
Sbjct: 97  PEPDSGPGPTQGSWERQL-----LRAALRRADCLTQCAARRLGPGGAARLRVGSALRDAF 151

Query: 141 RKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDL 200
           R+R PYNYLQ AY+++ KL+ A AAAHTFFV NP H++M++++  Y+ MSGV+   F+DL
Sbjct: 152 RRREPYNYLQRAYYQLKKLDLAAAAAHTFFVANPMHLQMREDMAKYRRMSGVRPQSFRDL 211

Query: 201 ETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEY 260
           ET PH   +  G+ L   ++   A+P LE ALQ      E CRA CEGP +  G    E 
Sbjct: 212 ETPPHWAAYDTGLELLGRQEAGLALPRLEEALQGSLAQMESCRADCEGPEEQQGAEEEED 271

Query: 261 NA----DLFQAITDHYIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIGN 316
            A     L++AI  H+IQVL C+Q CV E A+ P R  P  DFLP+    L  A+  +GN
Sbjct: 272 GAASQGGLYEAIAGHWIQVLQCRQRCVGETATRPGRSFPVPDFLPNQLRRLHEAHAQVGN 331

Query: 317 YTQAVECAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTRSIGPRESAKEYRQRSLLEKELL 376
            +QA+E   + LLF+P DE   + L  Y A LGE     +GPRE  + +  RSL EK  L
Sbjct: 332 LSQAIENVLSVLLFYPEDEAAKRALNQYQAQLGEPRP-GLGPREDIQRFILRSLGEKRQL 390

Query: 377 FFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAVRISQEIGNLMKEIETLVEEKT 436
           ++A +  G  F DPD WTP  +IP+ L+EK + ++E                        
Sbjct: 391 YYAMEHLGTSFKDPDPWTPAALIPEALREKLREDQEK-------------------RPWD 431

Query: 437 KESLDVSRLTREGGPLLYEGISLTMNSKLLNGSQRVVMDGVISDHECQELQRLTNVAATS 496
            E +    LT     LL EG++LT +S+ LNGS+R V+DG+++  EC  L +L   AA +
Sbjct: 432 HEPVKPKPLTYWKDVLLLEGVTLTQDSRQLNGSERAVLDGLLTPAECGVLLQLAKDAAGA 491

Query: 497 G--DGYRGQTSPHTPNEKFYGVTVFKALKLGQEGKVPLQSAHLYYNVTEKVRRIMESYFR 554
           G   GYRG+ SPHTP+E+F G+TV KA +L + G V  Q A L   V+E+VR + ++YF 
Sbjct: 492 GARSGYRGRRSPHTPHERFEGLTVLKAAQLARAGTVGSQGAKLLLEVSERVRTLTQAYFS 551

Query: 555 LDTPLYFSYSHLVCRTAIEEVQAERKDDSHPVHVDNCILNAETLVCVKEPPAYTFRDYSA 614
            + PL+ S++HLVCR+AIE  Q +R D SHPVH DNC+L+ +T  C +EPPAYT+RDYS 
Sbjct: 552 PERPLHLSFTHLVCRSAIEGEQEQRMDLSHPVHADNCVLDPDTGECWREPPAYTYRDYSG 611

Query: 615 ILYLNGDFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHGVKAVTRGQRCAIAL 674
           +LYLN DF GG+ +FTE +A TVTA V+P+CGR V FSSG ENPHGV AVTRG+RCA+AL
Sbjct: 612 LLYLNDDFQGGDLFFTEPNALTVTARVRPRCGRLVAFSSGVENPHGVWAVTRGRRCALAL 671

Query: 675 WFTLDPRHSER 685
           W T  P H E+
Sbjct: 672 WHTWAPEHREQ 682


>gi|197313662 leprecan-like 1 isoform b [Homo sapiens]
          Length = 527

 Score =  531 bits (1368), Expect = e-151
 Identities = 263/515 (51%), Positives = 347/515 (67%), Gaps = 16/515 (3%)

Query: 177 MEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYF 236
           MEMQQN++ Y+  +GV+     D E +PHM+ +  GV+ Y  +  + A+ H E AL+EYF
Sbjct: 1   MEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYF 60

Query: 237 VAYEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSREKPF 296
           V   ECR LCEGP  ++ Y YL Y A L++AI DHY+QVL C+  CV ELA+ P R  P 
Sbjct: 61  VEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPI 120

Query: 297 EDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAMLGEE-HTRS 355
           E+FLP HY+YLQFAYY +G Y +A+ECAK YLL  P+DE +  N+ YY ++L +     S
Sbjct: 121 ENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPAS 180

Query: 356 IGPRESAKEYRQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAV 415
           I  RE    + +R  LE EL+  A +  G  + +P+ W             +   R+   
Sbjct: 181 IEAREDLTMFVKRHKLESELIKSAAEGLGFSYTEPNYWI------------RYGGRQDEN 228

Query: 416 RISQEIGNLMKEIETLVEEKTKESLDVSRLTREGGPLLYEGISLTMNSKLLNGSQRVVMD 475
           R+   +     E+      K K S  + R  REGGPLLYE I+   NS+ LNG+QRV++D
Sbjct: 229 RVPSGVNVEGAEVHGFSMGK-KLSPKIDRDLREGGPLLYENITFVYNSEQLNGTQRVLLD 287

Query: 476 GVISDHECQELQRLTNVAATSGDGYRGQTSPHTPNEKFYGVTVFKALKLGQEGKVPLQSA 535
            V+S+ +C+EL  + +     GDGYRG+TSPHTPNEKF G TV KALK G EG+VPL+SA
Sbjct: 288 NVLSEEQCRELHSVASGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKSGYEGRVPLKSA 347

Query: 536 HLYYNVTEKVRRIMESYFRLDTPLYFSYSHLVCRTAIEEVQAERKDDSHPVHVDNCILNA 595
            L+Y+++EK RRI+ESYF L++ LYFSY+H+VCRTA+   Q  R D SHP+H DNC+L+ 
Sbjct: 348 RLFYDISEKARRIVESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLSHPIHADNCLLDP 407

Query: 596 ETLVCVKEPPAYTFRDYSAILYLNGDFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGT 655
           E   C KEPPAYTFRDYSA+LY+N DF+GG F FTE+DAKTVTA ++P+CGR + FSSG 
Sbjct: 408 EANECWKEPPAYTFRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGG 467

Query: 656 ENPHGVKAVTRGQRCAIALWFTLDP--RHSERVRA 688
           ENPHGVKAVT+G+RCA+ALWFTLDP  R  ER++A
Sbjct: 468 ENPHGVKAVTKGKRCAVALWFTLDPLYRELERIQA 502



 Score = 40.4 bits (93), Expect = 0.006
 Identities = 14/44 (31%), Positives = 30/44 (68%)

Query: 146 YNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQQNLDYYQTM 189
           Y+YLQ AY+++ +  KA+  A  + + +P+  ++  N+DYY+++
Sbjct: 128 YDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESL 171


>gi|5453601 cartilage associated protein precursor [Homo sapiens]
          Length = 401

 Score =  214 bits (545), Expect = 2e-55
 Identities = 141/391 (36%), Positives = 203/391 (51%), Gaps = 36/391 (9%)

Query: 4   RALKLLTTLLAVVAA--ASQAEVESEAGWGMVTPDLL-----FAEGTAAYARGDWPGVVL 56
           R    L  LL V  A  A +A+ E  +       +L+     +      Y+   W   V 
Sbjct: 6   RGAAALLALLCVACALRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHWAESVG 65

Query: 57  SMERALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALRDLSFFGGLLRR 116
            +E +LR    LR     C   C+A          +P P  A+G A+  +L  FGGLLRR
Sbjct: 66  YLEISLRLHRLLRDSEAFCHRNCSA----------APQPEPAAGLASYPELRLFGGLLRR 115

Query: 117 AACLRRCL-GPPAAHSL--SEEMELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGN 173
           A CL+RC  G PA      S E+  +F++R PY +LQ AYFK N L KA+AAAHTF + +
Sbjct: 116 AHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKH 175

Query: 174 PEHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQ 233
           P+   M++N+ YY+++ G ++   KDLET+ +   F   VR Y+ E  + ++  +E AL 
Sbjct: 176 PDDEMMKRNMAYYKSLPGAEDY-IKDLETKSYESLFIRAVRAYNGENWRTSITDMELALP 234

Query: 234 EYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSRE 293
           ++F A+ EC A CEG  +   +       D + +I DHY++VL CK  C   L +     
Sbjct: 235 DFFKAFYECLAACEGSREIKDFK------DFYLSIADHYVEVLECKIQCEENL-TPVIGG 287

Query: 294 KPFEDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAM-----L 348
            P E F+ + Y+YLQFAYY + +   A  CA +YLLF  ND+VM QNL YY        L
Sbjct: 288 YPVEKFVATMYHYLQFAYYKLNDLKNAAPCAVSYLLFDQNDKVMQQNLVYYQYHRDTWGL 347

Query: 349 GEEHTRSIGPRESAKEYRQRSLLEKELLFFA 379
            +EH +   PR  A ++   + L+KEL  FA
Sbjct: 348 SDEHFQ---PRPEAVQFFNVTTLQKELYDFA 375


>gi|5454038 synaptonemal complex protein SC65 [Homo sapiens]
          Length = 437

 Score =  187 bits (476), Expect = 2e-47
 Identities = 131/382 (34%), Positives = 182/382 (47%), Gaps = 28/382 (7%)

Query: 12  LLAVVAAASQAEVESEAGWGMVTPDLL-----FAEGTAAYARGDWPGVVLSMERALRSRA 66
           LL ++  ++ A+ E  +  G    DL+     +      Y    W      +E ALR   
Sbjct: 8   LLWLLLGSAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHR 67

Query: 67  ALRALRLRCRTQCAADFPW-ELDPDWSPSPAQASGAAALRDLSFFGGLLRRAACLRRCLG 125
            LR     C   C+   P  + DPD   +   A       +L  FG +L RAACLRRC  
Sbjct: 68  LLRDSEAFCHANCSGPAPAAKPDPDGGRADEWAC------ELRLFGRVLERAACLRRCKR 121

Query: 126 PPAAHSLS---EEMELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQQN 182
              A  +     ++  +F+ R PY YL  A FK N+LEKAVAAA+TF   NP+H    + 
Sbjct: 122 TLPAFQVPYPPRQLLRDFQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKY 181

Query: 183 LDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEEC 242
           L+YYQ M  V +    DLE QP+   F   V+LY+    + +   +E AL EY   +  C
Sbjct: 182 LNYYQGMLDVADESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFARC 241

Query: 243 RALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFED-FLP 301
            A CEG ++   +       D + AI D + + L CK +C   L   P+    F D F+ 
Sbjct: 242 LAGCEGAHEQVDFK------DFYPAIADLFAESLQCKVDCEANLT--PNVGGYFVDKFVA 293

Query: 302 SHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYY---AAMLGEEHTRSIGP 358
           + Y+YLQFAYY + +  QA   A +Y+LF P D VM QNL YY    A  G E      P
Sbjct: 294 TMYHYLQFAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLVYYRFHRARWGLEE-EDFQP 352

Query: 359 RESAKEYRQRSLLEKELLFFAY 380
           RE A  Y  ++   +ELL F +
Sbjct: 353 REEAMLYHNQTAELRELLEFTH 374


>gi|239753578 PREDICTED: similar to cartilage associated protein
           [Homo sapiens]
          Length = 241

 Score = 74.7 bits (182), Expect = 3e-13
 Identities = 57/168 (33%), Positives = 77/168 (45%), Gaps = 20/168 (11%)

Query: 4   RALKLLTTLLAVVAA--ASQAEVESEAGWGMVTPDLL-----FAEGTAAYARGDWPGVVL 56
           R    L  LL V  A  A +A+ E  +       +L+     +      Y+   W   V 
Sbjct: 6   RGAAALLALLCVACALRAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHWAESVG 65

Query: 57  SMERALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALRDLSFFGGLLRR 116
            +E +LR    LR     C   C+A          +P P  A+G A+  +L  FGGLLRR
Sbjct: 66  YLEISLRLHRLLRDSEAFCHRNCSA----------APQPEPAAGLASYPELRLFGGLLRR 115

Query: 117 AACLRRC-LGPPAAHSL--SEEMELEFRKRSPYNYLQVAYFKINKLEK 161
           A CL+RC  G PA      S E+  +F++R PY +LQ AYFK N L K
Sbjct: 116 AHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPK 163



 Score = 33.1 bits (74), Expect = 0.89
 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 201 ETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEE---CRALCEG-PYDYDGYN 256
           E  P    +R  +  YS E   E+V +LE +L+ + +  +    C   C   P       
Sbjct: 40  ELMPLESAYRHALDKYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPAAG 99

Query: 257 YLEY-NADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIG 315
              Y    LF  +      +  CKQ       S PSRE   +      Y +LQFAY+   
Sbjct: 100 LASYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKAN 159

Query: 316 N 316
           N
Sbjct: 160 N 160


>gi|13375891 hypothetical protein LOC79701 isoform 1 [Homo sapiens]
          Length = 319

 Score = 57.0 bits (136), Expect = 6e-08
 Identities = 47/153 (30%), Positives = 66/153 (43%), Gaps = 28/153 (18%)

Query: 537 LYYNVTEKVRRIMESYFRLDTPLYFSYSHLVCRTAIEEVQAERKDDSHP----VHVDNCI 592
           LY  V +KV+  +   F +      S  HL   T    + +     +H      HVD   
Sbjct: 180 LYREVRQKVQLTIAEAFGISA----SSLHLTKPTFFSRINSTEARTAHDEYWHAHVDKV- 234

Query: 593 LNAETLVCVKEPPAYTFRDYSAILYLNG---DFDGGNFYFTELDAKTVTAEVQPQCGRAV 649
                         Y   DY+++LYL+    DF GG F F E  A      V+P+ GR  
Sbjct: 235 -------------TYGSFDYTSLLYLSNYLEDFGGGRFMFMEEGANKT---VEPRAGRVS 278

Query: 650 GFSSGTENPHGVKAVTRGQRCAIALWFTLDPRH 682
            F+SG+EN H V+ V  G R AI + F+ +P H
Sbjct: 279 FFTSGSENLHRVEKVHWGTRYAITIAFSCNPDH 311


>gi|33589818 prolyl 4-hydroxylase, alpha III subunit precursor [Homo
           sapiens]
          Length = 544

 Score = 37.0 bits (84), Expect = 0.062
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 297 EDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAMLGE 350
           E  L    ++L FAY+  GN + A+  ++ +LL+ P+++ M +N+  Y  +L E
Sbjct: 223 EASLEDALDHLAFAYFRAGNVSCALSLSREFLLYSPDNKRMARNVLKYERLLAE 276


>gi|55769587 probable nucleolar complex protein 14 [Homo sapiens]
          Length = 857

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 18/46 (39%), Positives = 32/46 (69%), Gaps = 2/46 (4%)

Query: 396 EEVIPKRLQEKQK--SERETAVRISQEIGNLMKEIETLVEEKTKES 439
           EE+I K  QEK++  ++RE A+ +++++    KEI+TL+  KT +S
Sbjct: 194 EELIAKSKQEKRERQAQREDALELTEKLDQDWKEIQTLLSHKTPKS 239


>gi|13489073 egl nine homolog 1 [Homo sapiens]
          Length = 426

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 610 RDYSAILYLNGDFDG---GNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHGVKAVTR 666
           R  + I YLN D+D    G       + K   A+++P+  R + F S   NPH V+    
Sbjct: 322 RCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRNPHEVQP-AY 380

Query: 667 GQRCAIALW-FTLDPRHSERVRAARAGQG 694
             R AI +W F  D R   +V+     +G
Sbjct: 381 ATRYAITVWYFDADERARAKVKYLTGEKG 409


>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
          Length = 1758

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 409  SERETAVRISQEIGNLMKEIETLVEEKTKESLDVSRLTREG 449
            SE   +V+  +  GN+ K+++  + EK KESLD + + + G
Sbjct: 1612 SESNVSVKEEESSGNISKDLKDKIVEKAKESLDTAAVVQVG 1652


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
          Length = 1792

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 409  SERETAVRISQEIGNLMKEIETLVEEKTKESLDVSRLTREG 449
            SE   +V+  +  GN+ K+++  + EK KESLD + + + G
Sbjct: 1646 SESNVSVKEEESSGNISKDLKDKIVEKAKESLDTAAVVQVG 1686


>gi|47519562 reticulon 4 isoform E [Homo sapiens]
          Length = 986

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 18/129 (13%)

Query: 338 NQNLAYYAAMLGEEHTRSIGPRESAKEYRQRS---LLEKELLFFA---YDVFGIPF-VDP 390
           ++ L   + +L  E T      E++KE  +++   L++++L  F+   Y   G  F V P
Sbjct: 43  HEYLGNLSTVLPTEGTLQENVSEASKEVSEKAKTLLIDRDLTEFSELEYSEMGSSFSVSP 102

Query: 391 DSWTP-------EEVIPKRLQEKQKSERETAVRISQEIGN----LMKEIETLVEEKTKES 439
            + +        EE+I K   E++K      +   QE+      L+KE E +  EK K+S
Sbjct: 103 KAESAVIVANPREEIIVKNKDEEEKLVSNNILHNQQELPTALTKLVKEDEVVSSEKAKDS 162

Query: 440 LDVSRLTRE 448
            +  R+  E
Sbjct: 163 FNEKRVAVE 171


>gi|24431935 reticulon 4 isoform A [Homo sapiens]
          Length = 1192

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 18/129 (13%)

Query: 338 NQNLAYYAAMLGEEHTRSIGPRESAKEYRQRS---LLEKELLFFA---YDVFGIPF-VDP 390
           ++ L   + +L  E T      E++KE  +++   L++++L  F+   Y   G  F V P
Sbjct: 249 HEYLGNLSTVLPTEGTLQENVSEASKEVSEKAKTLLIDRDLTEFSELEYSEMGSSFSVSP 308

Query: 391 DSWTP-------EEVIPKRLQEKQKSERETAVRISQEIGN----LMKEIETLVEEKTKES 439
            + +        EE+I K   E++K      +   QE+      L+KE E +  EK K+S
Sbjct: 309 KAESAVIVANPREEIIVKNKDEEEKLVSNNILHNQQELPTALTKLVKEDEVVSSEKAKDS 368

Query: 440 LDVSRLTRE 448
            +  R+  E
Sbjct: 369 FNEKRVAVE 377


>gi|56549696 E1A binding protein p400 [Homo sapiens]
          Length = 3122

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 404 QEKQKSERETAVRISQEIGNLMKEIETLVE--------EKTKESLDVSRLTREGGPLLYE 455
           +E+Q   R  A   ++EI      IE +VE        EK K++L++ +++R G  L  +
Sbjct: 823 KEEQSRLRRIAASTAREIECFWSNIEQVVEIKLRVELEEKRKKALNLQKVSRRGKELRPK 882

Query: 456 GISLTMNSKL---LNGSQRVVMDGVISDHECQELQRLTNVAATSG 497
           G      S L   ++G +R     +  D    E + +    A  G
Sbjct: 883 GFDALQESSLDSGMSGRKRKASISLTDDEVDDEEETIEEEEANEG 927


>gi|83921609 hypothetical protein LOC127254 [Homo sapiens]
          Length = 1530

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 396 EEVIPKRLQEKQKSERETAVRISQEIGNLMKEIETLVEEKTKE 438
           E VIPKR + K+     +A   +QEI   +KE+ T VEE T +
Sbjct: 436 EYVIPKRNEIKENKTSVSAKFSAQEIKTGLKEVVTAVEEMTSK 478


>gi|145701012 EGL nine (C.elegans) homolog 2 [Homo sapiens]
          Length = 407

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 610 RDYSAILYLNGDFD---GGNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHGVKAVTR 666
           R  + I YLN ++D    G       + + V A ++P   R + F S   NPH VK    
Sbjct: 306 RCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIFWSDRRNPHEVKP-AY 364

Query: 667 GQRCAIALWF 676
             R AI +W+
Sbjct: 365 ATRYAITVWY 374


>gi|16604260 EGL nine (C.elegans) homolog 2 [Homo sapiens]
          Length = 407

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 610 RDYSAILYLNGDFD---GGNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHGVKAVTR 666
           R  + I YLN ++D    G       + + V A ++P   R + F S   NPH VK    
Sbjct: 306 RCITCIYYLNQNWDVKVHGGLLQIFPEGRPVVANIEPLFDRLLIFWSDRRNPHEVKP-AY 364

Query: 667 GQRCAIALWF 676
             R AI +W+
Sbjct: 365 ATRYAITVWY 374


>gi|63252886 prolyl 4-hydroxylase, alpha I subunit isoform 1
           precursor [Homo sapiens]
          Length = 534

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 142 KRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLE 201
           K S  +YL  A ++   L+KA+         +PEH     NL Y++ +   KE D     
Sbjct: 204 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM-AKEKDVNKSA 262

Query: 202 TQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEG 248
           +               ++  Q+  P  +    +Y    ++   LC G
Sbjct: 263 S--------------DDQSDQKTTPKKKGVAVDYLPERQKYEMLCRG 295


>gi|217272851 prolyl 4-hydroxylase, alpha I subunit isoform 3
           precursor [Homo sapiens]
          Length = 516

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 142 KRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLE 201
           K S  +YL  A ++   L+KA+         +PEH     NL Y++ +   KE D     
Sbjct: 204 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM-AKEKDVNKSA 262

Query: 202 TQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEG 248
           +               ++  Q+  P  +    +Y    ++   LC G
Sbjct: 263 S--------------DDQSDQKTTPKKKGVAVDYLPERQKYEMLCRG 295


>gi|217272849 prolyl 4-hydroxylase, alpha I subunit isoform 2
           precursor [Homo sapiens]
          Length = 534

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 142 KRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLE 201
           K S  +YL  A ++   L+KA+         +PEH     NL Y++ +   KE D     
Sbjct: 204 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM-AKEKDVNKSA 262

Query: 202 TQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEG 248
           +               ++  Q+  P  +    +Y    ++   LC G
Sbjct: 263 S--------------DDQSDQKTTPKKKGVAVDYLPERQKYEMLCRG 295


>gi|63252888 prolyl 4-hydroxylase, alpha I subunit isoform 2
           precursor [Homo sapiens]
          Length = 534

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 142 KRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLE 201
           K S  +YL  A ++   L+KA+         +PEH     NL Y++ +   KE D     
Sbjct: 204 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM-AKEKDVNKSA 262

Query: 202 TQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEECRALCEG 248
           +               ++  Q+  P  +    +Y    ++   LC G
Sbjct: 263 S--------------DDQSDQKTTPKKKGVAVDYLPERQKYEMLCRG 295


>gi|11545787 egl nine homolog 3 [Homo sapiens]
          Length = 239

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 610 RDYSAILYLNGDFDG---GNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHGVKAVTR 666
           R  + I YLN ++D    G       + K+  A+V+P   R + F S   NPH V+  + 
Sbjct: 144 RCITCIYYLNKNWDAKLHGGILRIFPEGKSFIADVEPIFDRLLFFWSDRRNPHEVQP-SY 202

Query: 667 GQRCAIALWF 676
             R A+ +W+
Sbjct: 203 ATRYAMTVWY 212


>gi|9789865 eukaryotic translation initiation factor 4E nuclear
           import factor 1 [Homo sapiens]
          Length = 985

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 392 SWTPEEVIPKRLQEKQKSERETAVRISQEIGNLMKEIETLVEEKTKESLDVSRLTREGGP 451
           S+TP  VI K  + K+KS+ E A      +G+  ++ +   EE    S  V    R+  P
Sbjct: 695 SFTPTSVIRKMYESKEKSKEEPASG-KAALGDSKEDTQKASEENLLSSSSVPSADRDSSP 753

Query: 452 LLYEGISLTMNSKL 465
                   T NSKL
Sbjct: 754 --------TTNSKL 759


>gi|157671947 hypothetical protein LOC79974 isoform 2 [Homo sapiens]
          Length = 783

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 171 VGNPEHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQ-------- 222
           VGNP  +  Q    Y+  ++  ++  F + +TQPH  E+       + E+PQ        
Sbjct: 492 VGNPGSVLTQ----YWSLLNVFEQFQFMNKKTQPHPLEWNSFTEDKNIEKPQVPFDAIEN 547

Query: 223 --EAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQV 275
              AVP ++   +E   + +E    C     +  + +LE N D    I D+Y +V
Sbjct: 548 KKAAVPQIKNENKEIHCSDDE-NTPCHIKQIFT-HPHLELNPDFHPKIKDYYCEV 600


>gi|157671945 hypothetical protein LOC79974 isoform 1 [Homo sapiens]
          Length = 1026

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 171 VGNPEHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQ-------- 222
           VGNP  +  Q    Y+  ++  ++  F + +TQPH  E+       + E+PQ        
Sbjct: 492 VGNPGSVLTQ----YWSLLNVFEQFQFMNKKTQPHPLEWNSFTEDKNIEKPQVPFDAIEN 547

Query: 223 --EAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQV 275
              AVP ++   +E   + +E    C     +  + +LE N D    I D+Y +V
Sbjct: 548 KKAAVPQIKNENKEIHCSDDE-NTPCHIKQIFT-HPHLELNPDFHPKIKDYYCEV 600


>gi|5729734 activator of S phase kinase [Homo sapiens]
          Length = 674

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 175 EHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQE 234
           EH+ +Q    ++       E DFK++++ P  +  R    +    + +   P+ E   + 
Sbjct: 541 EHLTVQAKAPFHTPPEEPNECDFKNMDSLPSGKIHRKVKIILGRNRKENLEPNAEFDKRT 600

Query: 235 YFVAYEECRALCEGP 249
            F+  EE R +C  P
Sbjct: 601 EFITQEENR-ICSSP 614


>gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens]
          Length = 356

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 480 DHECQELQRLTNVAATSGDGYRG 502
           +H+ Q ++RLT  AATSG G RG
Sbjct: 233 EHKNQTIERLTKTAATSGRGGRG 255


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,384,987
Number of Sequences: 37866
Number of extensions: 1187149
Number of successful extensions: 3533
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3478
Number of HSP's gapped (non-prelim): 43
length of query: 697
length of database: 18,247,518
effective HSP length: 109
effective length of query: 588
effective length of database: 14,120,124
effective search space: 8302632912
effective search space used: 8302632912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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