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Search of human proteins with 226054871
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226054871 myelin protein zero-like 1 isoform c [Homo
sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226054871 myelin protein zero-like 1 isoform c [Homo sapiens] 239 5e-64
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens] 171 9e-44
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens] 171 9e-44
gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens] 43 5e-05
gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens] 43 5e-05
gi|4505243 myelin protein zero [Homo sapiens] 39 0.001
gi|41152506 prostaglandin F2 receptor negative regulator [Homo s... 37 0.005
gi|21361429 V-set and immunoglobulin domain containing 2 [Homo s... 34 0.022
gi|38093645 myelin protein zero-like 3 [Homo sapiens] 34 0.029
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 29 0.72
gi|226437599 V-set and transmembrane domain containing 2B [Homo ... 28 1.2
gi|239757226 PREDICTED: V-set and transmembrane domain containin... 28 1.2
gi|239751732 PREDICTED: V-set and transmembrane domain containin... 28 1.2
gi|239746233 PREDICTED: V-set and transmembrane domain containin... 28 1.2
gi|239508712 PREDICTED: similar to rCG47812 [Homo sapiens] 27 2.7
gi|224586865 natural cytotoxicity triggering receptor 3 isoform ... 27 2.7
gi|24475832 natural cytotoxicity triggering receptor 3 isoform a... 27 2.7
gi|224586860 natural cytotoxicity triggering receptor 3 isoform ... 27 2.7
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 27 4.7
gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens] 27 4.7
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 27 4.7
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 27 4.7
gi|223029432 solute carrier family 2 (facilitated glucose transp... 27 4.7
gi|28372555 sodium channel, voltage-gated, type IV, beta isoform... 27 4.7
gi|46852164 mannosidase, alpha, class 2C, member 1 [Homo sapiens] 27 4.7
gi|54607053 GCN1 general control of amino-acid synthesis 1-like ... 27 4.7
gi|42560233 poliovirus receptor-related 1 isoform 3 [Homo sapiens] 26 6.1
gi|42560231 poliovirus receptor-related 1 isoform 2 [Homo sapiens] 26 6.1
gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens] 26 6.1
gi|167614500 lymphocyte-activation protein 3 precursor [Homo sap... 26 6.1
>gi|226054871 myelin protein zero-like 1 isoform c [Homo sapiens]
Length = 119
Score = 239 bits (609), Expect = 5e-64
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF 60
MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF
Sbjct: 1 MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF 60
Query: 61 KSTSTTGGLTSVSWSFQPEGADTTVSGPVIYAQLDHSGGHHSDKINKSESVVYADIRKN 119
KSTSTTGGLTSVSWSFQPEGADTTVSGPVIYAQLDHSGGHHSDKINKSESVVYADIRKN
Sbjct: 61 KSTSTTGGLTSVSWSFQPEGADTTVSGPVIYAQLDHSGGHHSDKINKSESVVYADIRKN 119
>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
Length = 209
Score = 171 bits (434), Expect = 9e-44
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF 60
MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF
Sbjct: 1 MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF 60
Query: 61 KSTSTTGGLTSVSWSFQPEGADTTVS 86
KSTSTTGGLTSVSWSFQPEGADTTVS
Sbjct: 61 KSTSTTGGLTSVSWSFQPEGADTTVS 86
>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
Length = 269
Score = 171 bits (434), Expect = 9e-44
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF 60
MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF
Sbjct: 1 MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF 60
Query: 61 KSTSTTGGLTSVSWSFQPEGADTTVS 86
KSTSTTGGLTSVSWSFQPEGADTTVS
Sbjct: 61 KSTSTTGGLTSVSWSFQPEGADTTVS 86
Score = 73.6 bits (179), Expect = 3e-14
Identities = 41/59 (69%), Positives = 42/59 (71%), Gaps = 7/59 (11%)
Query: 61 KSTSTTGGLTSVSWSFQPEGADTTVSGPVIYAQLDHSGGHHSDKINKSESVVYADIRKN 119
KS S T GL P G+ GPVIYAQLDHSGGHHSDKINKSESVVYADIRKN
Sbjct: 218 KSPSDTEGLVKSL----PSGSH---QGPVIYAQLDHSGGHHSDKINKSESVVYADIRKN 269
>gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 43.1 bits (100), Expect = 5e-05
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 35 VSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQP 78
++A+E+YT + + NGT +L C F S + G +V+W+F+P
Sbjct: 24 IAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVTWNFRP 67
>gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 43.1 bits (100), Expect = 5e-05
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 35 VSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQP 78
++A+E+YT + + NGT +L C F S + G +V+W+F+P
Sbjct: 24 IAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVTWNFRP 67
>gi|4505243 myelin protein zero [Homo sapiens]
Length = 258
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 23 VLAAAL--GLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEG 80
+LA L L+ + A+ VYT +E+ A G++ L C F S+ S +W +QPEG
Sbjct: 23 ILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTWRYQPEG 82
Query: 81 ADTTVS 86
+S
Sbjct: 83 GRDAIS 88
>gi|41152506 prostaglandin F2 receptor negative regulator [Homo
sapiens]
Length = 879
Score = 36.6 bits (83), Expect = 0.005
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 36 SALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEGADTTVSGPVIYAQLD 95
S L PK + VA G + LTC + V+WSF D+T+ G + A+LD
Sbjct: 277 SVLRAAVPKNVSVAEGKELDLTCNITTDRADDVRPEVTWSFS-RMPDSTLPGSRVLARLD 335
Query: 96 HSGGHHS 102
HS
Sbjct: 336 RDSLVHS 342
>gi|21361429 V-set and immunoglobulin domain containing 2 [Homo
sapiens]
Length = 327
Score = 34.3 bits (77), Expect = 0.022
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 26 AALGLLTAGVSALEVYTPKE-IFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEGADTT 84
A LG L A+EV P E + G +LTC + +++ G ++ WSF G +
Sbjct: 12 ALLGFLCLSGLAVEVKVPTEPLSTPLGKTAELTCTY--STSVGDSFALEWSFVQPGKPIS 69
Query: 85 VSGPVIYAQLDHSGGHHSDKINKSESV 111
S P++Y + GH +KS+ V
Sbjct: 70 ESHPILY----FTNGHLYPTGSKSKRV 92
>gi|38093645 myelin protein zero-like 3 [Homo sapiens]
Length = 235
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 35 VSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEGADTTVS 86
V +LE+ + G + KL C FKSTS ++ W+++P + TVS
Sbjct: 29 VFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVS 80
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 29.3 bits (64), Expect = 0.72
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 37 ALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLT-SVSWSFQ 77
++EV P + V NG+ +L C F S T S++W++Q
Sbjct: 29 SMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQ 70
>gi|226437599 V-set and transmembrane domain containing 2B [Homo
sapiens]
Length = 285
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 19 WLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQP 78
+L +L AL L A + EV PK++ V G ++ C F+++ T + W +
Sbjct: 12 YLPPLLLHALLLFVADAAFTEV--PKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLK 69
Query: 79 E 79
E
Sbjct: 70 E 70
>gi|239757226 PREDICTED: V-set and transmembrane domain containing
2B [Homo sapiens]
Length = 285
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 19 WLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQP 78
+L +L AL L A + EV PK++ V G ++ C F+++ T + W +
Sbjct: 12 YLPPLLLHALLLFVADAAFTEV--PKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLK 69
Query: 79 E 79
E
Sbjct: 70 E 70
>gi|239751732 PREDICTED: V-set and transmembrane domain containing
2B [Homo sapiens]
Length = 285
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 19 WLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQP 78
+L +L AL L A + EV PK++ V G ++ C F+++ T + W +
Sbjct: 12 YLPPLLLHALLLFVADAAFTEV--PKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLK 69
Query: 79 E 79
E
Sbjct: 70 E 70
>gi|239746233 PREDICTED: V-set and transmembrane domain containing
2B [Homo sapiens]
Length = 285
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 19 WLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQP 78
+L +L AL L A + EV PK++ V G ++ C F+++ T + W +
Sbjct: 12 YLPPLLLHALLLFVADAAFTEV--PKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLK 69
Query: 79 E 79
E
Sbjct: 70 E 70
>gi|239508712 PREDICTED: similar to rCG47812 [Homo sapiens]
Length = 812
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 13 APDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQG 54
AP RW +VL L LL V +++ +E+FV G+ G
Sbjct: 39 APGPPRWSQAVLLGVLSLLFTLVVGIDLRQLEELFVLLGSGG 80
>gi|224586865 natural cytotoxicity triggering receptor 3 isoform c
[Homo sapiens]
Length = 190
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 23 VLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSW 74
+L L ++ G AL V P EI G+ L C F ++ + SV+W
Sbjct: 4 MLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTW 55
>gi|24475832 natural cytotoxicity triggering receptor 3 isoform a
[Homo sapiens]
Length = 201
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 23 VLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSW 74
+L L ++ G AL V P EI G+ L C F ++ + SV+W
Sbjct: 4 MLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTW 55
>gi|224586860 natural cytotoxicity triggering receptor 3 isoform b
[Homo sapiens]
Length = 177
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 23 VLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSW 74
+L L ++ G AL V P EI G+ L C F ++ + SV+W
Sbjct: 4 MLLLILIMVHPGSCALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTW 55
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 26.6 bits (57), Expect = 4.7
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 57 TCKFKSTSTTGGLTSVSWSFQPEGADTTVSGPVIYAQLDHSGGHHSDKINKSESVVYAD 115
T F +STT G + S +F T S P A L H+ H S + +E+ + D
Sbjct: 434 TMHFPESSTTSGHSEESATFHGSTTHTKSSTPSTTAALAHTSYHSS--LGSTETTHFRD 490
>gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]
Length = 861
Score = 26.6 bits (57), Expect = 4.7
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 57 TCKFKSTSTTGGLTSVSWSFQPEGADTTVSGPVIYAQLDHSGGHHSDKINKSESVVYAD 115
T F +STT G + S +F T S P A L H+ H S + +E+ + D
Sbjct: 369 TMHFPESSTTSGHSEESATFHGSTTHTKSSTPSTTAALAHTSYHSS--LGSTETTHFRD 425
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 26.6 bits (57), Expect = 4.7
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 57 TCKFKSTSTTGGLTSVSWSFQPEGADTTVSGPVIYAQLDHSGGHHSDKINKSESVVYAD 115
T F +STT G + S +F T S P A L H+ H S + +E+ + D
Sbjct: 513 TMHFPESSTTSGHSEESATFHGSTTHTKSSTPSTTAALAHTSYHSS--LGSTETTHFRD 569
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 26.6 bits (57), Expect = 4.7
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 50 NGTQGKL--TCKFKSTSTTGGLTSVSWSFQPEGADTTVSGP-----VIYAQLDHSGGHHS 102
+GT G L TC+ S G VS+S QP+ T ++GP + + L +SG +
Sbjct: 417 HGTWGSLQETCE----SEVSGTQKVSFSGQPQNITTEMTGPNNTTNFMTSSLPNSGSVQN 472
Query: 103 DKINKSES 110
+++ S +
Sbjct: 473 NELPSSNT 480
>gi|223029432 solute carrier family 2 (facilitated glucose
transporter), member 6 isoform 1 [Homo sapiens]
Length = 507
Score = 26.6 bits (57), Expect = 4.7
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 20 LWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF----KSTSTTGGLTSVSW 74
L SVL AAL + AG L + +F AN T G L F S ++T GL S SW
Sbjct: 323 LLSVLIAALTMDLAGRKVLLFVSAAIMFAANLTLG-LYIHFGPRPLSPNSTAGLESESW 380
>gi|28372555 sodium channel, voltage-gated, type IV, beta isoform
1 precursor [Homo sapiens]
Length = 228
Score = 26.6 bits (57), Expect = 4.7
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 6 GAGAVIAAPDSRRWLWSVLAAALGLLTAGVS-ALEVYTPK--EIFVANGTQGKLTCKFKS 62
GAG AP RWL + L LGL V+ +LEV K +I+ NGT+ L C F S
Sbjct: 3 GAGDGGKAP--ARWLGTGL---LGLFLLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSS 57
>gi|46852164 mannosidase, alpha, class 2C, member 1 [Homo sapiens]
Length = 1040
Score = 26.6 bits (57), Expect = 4.7
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 5 AGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTS 64
AG G++IAAPD + ++ + A L + V L V + +A G F++
Sbjct: 156 AGKGSMIAAPDPEK-MFQLSRAELAVFHRDVHMLLVDLELLLGIAKGLGKDNQRSFQALY 214
Query: 65 TTGGLTSVSWSFQPEGADTTVSGPVIYAQLDHSGGHHSDKINKSESVVYA 114
T + +V QPE + PV A G H +S+ ++A
Sbjct: 215 TANQMVNVCDPAQPE------TFPVAQALASRFFGQHG---GESQHTIHA 255
>gi|54607053 GCN1 general control of amino-acid synthesis 1-like 1
[Homo sapiens]
Length = 2671
Score = 26.6 bits (57), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 36 SALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVS 73
SA+E T + G++GKLT + S G+ SVS
Sbjct: 333 SAMESLTKHLFAILGGSEGKLTVVAQKMSVLSGIGSVS 370
>gi|42560233 poliovirus receptor-related 1 isoform 3 [Homo
sapiens]
Length = 352
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 18 RWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQ 77
RW W + GV + V ++ GT L C F + + +T V+W
Sbjct: 12 RW-WGLALGLTAFFLPGVHSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKS 70
Query: 78 PEGADTTVS 86
G+ V+
Sbjct: 71 TNGSKQNVA 79
>gi|42560231 poliovirus receptor-related 1 isoform 2 [Homo
sapiens]
Length = 458
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 18 RWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQ 77
RW W + GV + V ++ GT L C F + + +T V+W
Sbjct: 12 RW-WGLALGLTAFFLPGVHSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKS 70
Query: 78 PEGADTTVS 86
G+ V+
Sbjct: 71 TNGSKQNVA 79
>gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo
sapiens]
Length = 517
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 18 RWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQ 77
RW W + GV + V ++ GT L C F + + +T V+W
Sbjct: 12 RW-WGLALGLTAFFLPGVHSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKS 70
Query: 78 PEGADTTVS 86
G+ V+
Sbjct: 71 TNGSKQNVA 79
>gi|167614500 lymphocyte-activation protein 3 precursor [Homo
sapiens]
Length = 525
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 35 VSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEGADTTVSG 87
V LE TP ++ G++ L C+ + T + W+ G D V+G
Sbjct: 259 VLGLEPPTPLTVYAGAGSRVGLPCRLPAGVGTRSFLTAKWTPPGGGPDLLVTG 311
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.127 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,331,242
Number of Sequences: 37866
Number of extensions: 163947
Number of successful extensions: 367
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 42
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.