Guide to the Human Genome
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Name: TKT Sequence: fasta or formatted (623aa) NCBI GI: 205277463
Description:

transketolase isoform 1

Referenced in:

Pentose Phosphate Pathway

Other entries for this name:
alt prot [540aa] transketolase isoform 2
alt mRNA [623aa] transketolase isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         73           3
 C cysteine            1.9         12           2
 D aspartate           5.6         35           2
 E glutamate           5.6         35           2
 F phenylalanine       3.9         24           2
 G glycine             7.2         45           2
 H histidine           2.7         17           1
 I isoleucine          7.5         47           2
 K lysine              6.7         42           3
 L leucine             7.4         46           2
 M methionine          2.1         13           1
 N asparagine          3.2         20           3
 P proline             4.5         28           2
 Q glutamine           4.2         26           2
 R arginine            4.7         29           1
 S serine              6.7         42           2
 T threonine           5.1         32           2
 V valine              5.8         36           2
 W tryptophan          0.6          4           1
 Y tyrosine            2.7         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transketolase isoform 1 
TKT                   1.000   transketolase isoform 1 
TKT                   0.775   transketolase isoform 2 
TKTL2                 0.680   transketolase-like 2 
TKTL1                 0.585   transketolase-like 1 isoform a 
TKTL1                 0.570   transketolase-like 1 isoform b 
TKTL1                 0.544   transketolase-like 1 isoform c 
PDHB                  0.021   pyruvate dehydrogenase (lipoamide) beta 
BCKDHA                0.010   branched chain keto acid dehydrogenase E1, alpha pol...
PDHA1                 0.008   pyruvate dehydrogenase E1 alpha 1 precursor 
NSUN6                 0.007   NOL1/NOP2/Sun domain family, member 6 
PDHA2                 0.006   pyruvate dehydrogenase E1 alpha 2 
UBR4                  0.005   retinoblastoma-associated factor 600 
SPHKAP                0.005   sphingosine kinase type 1-interacting protein isofo...
SPHKAP                0.005   sphingosine kinase type 1-interacting protein isofo...
MYH10                 0.004   myosin, heavy polypeptide 10, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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