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Search of human proteins with 22507403
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22507403 preproneuropeptide B [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22507403 preproneuropeptide B [Homo sapiens] 254 2e-68
gi|153281202 neuropeptide W preproprotein [Homo sapiens] 54 2e-08
gi|31982899 seven in absentia homolog 2 [Homo sapiens] 33 0.073
gi|239758001 PREDICTED: similar to facioscapulohumeral muscular ... 32 0.12
gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens] 30 0.36
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens] 30 0.36
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens] 30 0.36
gi|226371735 iroquois homeobox 3 [Homo sapiens] 29 0.81
gi|169214011 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1
gi|113428768 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ... 29 1.1
gi|113428351 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ... 29 1.1
gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo sap... 29 1.1
gi|115334682 SNAP25-interacting protein [Homo sapiens] 29 1.1
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ... 28 1.4
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 28 1.4
gi|13325057 solute carrier family 27 (fatty acid transporter), m... 28 1.4
gi|122937424 one cut homeobox 3 [Homo sapiens] 28 1.4
gi|32698676 lipoma HMGIC fusion partner-like 2 [Homo sapiens] 28 1.4
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 28 1.8
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens] 28 1.8
gi|239753576 PREDICTED: hypothetical protein [Homo sapiens] 28 2.3
gi|239748084 PREDICTED: hypothetical protein [Homo sapiens] 28 2.3
gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo sapi... 28 2.3
gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo sapi... 28 2.3
gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo ... 28 2.3
gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo sapi... 28 2.3
gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo sapi... 28 2.3
>gi|22507403 preproneuropeptide B [Homo sapiens]
Length = 125
Score = 254 bits (648), Expect = 2e-68
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MARSATLAAAALALCLLLAPPGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYR 60
MARSATLAAAALALCLLLAPPGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYR
Sbjct: 1 MARSATLAAAALALCLLLAPPGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYR 60
Query: 61 GAEPPGGAGASPELQLHPRLRSLAVCVQDVAPNLQRCERLPDGRGTYQCKANVFLSLRAA 120
GAEPPGGAGASPELQLHPRLRSLAVCVQDVAPNLQRCERLPDGRGTYQCKANVFLSLRAA
Sbjct: 61 GAEPPGGAGASPELQLHPRLRSLAVCVQDVAPNLQRCERLPDGRGTYQCKANVFLSLRAA 120
Query: 121 DCLAA 125
DCLAA
Sbjct: 121 DCLAA 125
>gi|153281202 neuropeptide W preproprotein [Homo sapiens]
Length = 165
Score = 54.3 bits (129), Expect = 2e-08
Identities = 33/64 (51%), Positives = 35/64 (54%)
Query: 10 AALALCLLLAPPGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAG 69
A L L LLL P AWYK A ++VGRAAGLL GLRRSPY R A P
Sbjct: 18 ALLLLLLLLPLPSGAWYKHVASPRYHTVGRAAGLLMGLRRSPYLWRRALRAAAGPLARDT 77
Query: 70 ASPE 73
SPE
Sbjct: 78 LSPE 81
>gi|31982899 seven in absentia homolog 2 [Homo sapiens]
Length = 324
Score = 32.7 bits (73), Expect = 0.073
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 21/83 (25%)
Query: 19 APPGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAGASPELQLHP 78
APP A AAG S +V AA ++SG P GG GA P H
Sbjct: 31 APPAAATIS-AAGPGSSAVPAAAAVISG-----------------PGGGGGAGPVSPQHH 72
Query: 79 RLRSL---AVCVQDVAPNLQRCE 98
L SL VC V P + +C+
Sbjct: 73 ELTSLFECPVCFDYVLPPILQCQ 95
>gi|239758001 PREDICTED: similar to facioscapulohumeral muscular
dystrophy [Homo sapiens]
Length = 300
Score = 32.0 bits (71), Expect = 0.12
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 27 KPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAGAS----PELQLHPRLRS 82
+P+ +S+G +GLL G+ R P+A +R AE GG +S P ++ P L +
Sbjct: 37 RPSCRGGIFSLGSRSGLLRGIEREPHA--CVLHRQAEVHGGPRSSLCPCPSMKFQPGLPA 94
Query: 83 LAV 85
+A+
Sbjct: 95 MAL 97
>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 30.4 bits (67), Expect = 0.36
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 22 GLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPP--------GGAGASPE 73
G A +P AG + G G G R S AR ++ RGA+P GGAG PE
Sbjct: 113 GTACQRPRAG----TEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPE 168
Query: 74 LQL 76
L
Sbjct: 169 TPL 171
>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 30.4 bits (67), Expect = 0.36
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 22 GLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPP--------GGAGASPE 73
G A +P AG + G G G R S AR ++ RGA+P GGAG PE
Sbjct: 113 GTACQRPRAG----TEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPE 168
Query: 74 LQL 76
L
Sbjct: 169 TPL 171
>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 30.4 bits (67), Expect = 0.36
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 22 GLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPP--------GGAGASPE 73
G A +P AG + G G G R S AR ++ RGA+P GGAG PE
Sbjct: 113 GTACQRPRAG----TEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPE 168
Query: 74 LQL 76
L
Sbjct: 169 TPL 171
>gi|226371735 iroquois homeobox 3 [Homo sapiens]
Length = 501
Score = 29.3 bits (64), Expect = 0.81
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 54 RRSQPYRGAEPPGGAGASPELQLHPRLRSLA 84
RRS P G PPG A A LQL P + A
Sbjct: 363 RRSPPGAGGSPPGAAVAPSALQLSPAAAAAA 393
>gi|169214011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 28.9 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 27 KPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAGASP 72
+P G + V G GL R R QP RG GG GA P
Sbjct: 101 RPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGR--AGGPGAGP 144
>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 22 GLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAGASPELQLHPRLR 81
G W AA H G A L+ + R R GA P G A A L
Sbjct: 150 GQGW---AAQHVGLGRGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSA 206
Query: 82 SLAVCVQDVAPNLQRCERLPDGRG 105
LA V D A L + P G G
Sbjct: 207 GLAAVVGDEAQALAAGSQRPQGLG 230
>gi|113428768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 28.9 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 27 KPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAGASP 72
+P G + V G GL R R QP RG GG GA P
Sbjct: 101 RPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGR--AGGPGAGP 144
>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
sapiens]
Length = 513
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 22 GLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAGASPELQLHPRLR 81
G W AA H G A L+ + R R GA P G A A L
Sbjct: 150 GQGW---AAQHVGLGRGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSA 206
Query: 82 SLAVCVQDVAPNLQRCERLPDGRG 105
LA V D A L + P G G
Sbjct: 207 GLAAVVGDEAQALAAGSQRPQGLG 230
>gi|113428351 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 28.9 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 27 KPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAGASP 72
+P G + V G GL R R QP RG GG GA P
Sbjct: 101 RPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGR--AGGPGAGP 144
>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
sapiens]
Length = 513
Score = 28.9 bits (63), Expect = 1.1
Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 22 GLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAGASPELQLHPRLR 81
G W AA H G A L+ + R R GA P G A A L
Sbjct: 150 GQGW---AAQHVGLGRGGAGQALAQVERGAVGRAEDLQAGAGPRGAAEAQAPQLLGVGSA 206
Query: 82 SLAVCVQDVAPNLQRCERLPDGRG 105
LA V D A L + P G G
Sbjct: 207 GLAAVVGDEAQALAAGSQRPQGLG 230
>gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo
sapiens]
Length = 633
Score = 28.9 bits (63), Expect = 1.1
Identities = 35/91 (38%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 3 RSATLAAAALALCLLLAPPGLAWYKPAAGHSSYS--VGRAAGLLSGLRRSPYARRSQP-- 58
R + LAAA C+ LA PG PAAG ++ S L L +A S P
Sbjct: 107 RFSLLAAAERGGCIALAAPG----TPAAGLAAGSGPCLPQPSSLPPLIPGGHATVSGPGV 162
Query: 59 YRGAEPPGGAG-ASPELQLHPRLRSLAVCVQ 88
RG P GAG AS E PR LA C Q
Sbjct: 163 ARGFASPLGAGRASGEQWQPPRPAPLAACAQ 193
>gi|115334682 SNAP25-interacting protein [Homo sapiens]
Length = 1183
Score = 28.9 bits (63), Expect = 1.1
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 28 PAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAGASPELQLHPRLRSLAVCV 87
P S G +GL SGL+ +R Y G PP AG SP RL A
Sbjct: 301 PHLASGSPPPGLPSGLPSGLQSGSPSRSRLSYAGGRPPSYAG-SPVHHAAERLGG-APAA 358
Query: 88 QDVAPN----LQRCERLPD 102
Q V+P+ L+R + PD
Sbjct: 359 QGVSPSPSAILERRDVKPD 377
>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
dystrophy [Homo sapiens]
Length = 468
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 27 KPAAGHSSYSVGRAAGLLSGLRRSPYA---RRSQPYRGAEPPGGAGASPELQLHPRLRSL 83
+P+ +S+G GLL G R P+A R G+ PP P ++ P L ++
Sbjct: 37 RPSRRGGIFSLGSRFGLLRGNEREPHACVLHRQAEVHGS-PPASLCPCPSVKFQPGLPAM 95
Query: 84 AV 85
A+
Sbjct: 96 AL 97
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 32 HSSYSVGRAAGLL--SGLRRSPYARRSQPYRGAEPPGGAGASPELQLHP 78
HS S+ R A L+ GLR P R + P G EP P + HP
Sbjct: 18 HSQVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEPGNRHPPPPAARTHP 66
>gi|13325057 solute carrier family 27 (fatty acid transporter),
member 5 [Homo sapiens]
Length = 690
Score = 28.5 bits (62), Expect = 1.4
Identities = 16/22 (72%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 6 TLAAAALALCLLLA--PPGLAW 25
+LAAAALAL LL A PPGL W
Sbjct: 65 SLAAAALALTLLPARLPPGLRW 86
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 28.5 bits (62), Expect = 1.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 31 GHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAGASP 72
G G AAGLL+ L A P+ G PGG+G P
Sbjct: 271 GSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGP 312
>gi|32698676 lipoma HMGIC fusion partner-like 2 [Homo sapiens]
Length = 228
Score = 28.5 bits (62), Expect = 1.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 61 GAEPPGGAGASPELQLHPRLRSLAVCVQDVAPNLQRCER 99
G EP G G SPE HP L A C+++ P +Q +R
Sbjct: 43 GVEPAGPGGGSPE-PYHPTLGIYARCIRN--PGVQHFQR 78
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 28.1 bits (61), Expect = 1.8
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 25 WYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGGAGASP 72
W KPAA S S A G + R+ P RR++ G +P
Sbjct: 663 WQKPAAAGSESSAAAAVGQEAEARKKPRRRRAKSRGDGGQNAAVGINP 710
>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
Length = 271
Score = 28.1 bits (61), Expect = 1.8
Identities = 33/122 (27%), Positives = 44/122 (36%), Gaps = 9/122 (7%)
Query: 7 LAAAALALCLLLAPPGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPG 66
L A+ L PP + ++ S+ S A LL P A R +P AEPPG
Sbjct: 28 LGASLYELVGYRQPPSSSSSSTSSTSSTSSSSTTAPLL------PKAAREKPEAPAEPPG 81
Query: 67 ---GAGASPELQLHPRLRSLAVCVQDVAPNLQRCERLPDGRGTYQCKANVFLSLRAADCL 123
G+GA P P + N + +R+ D V L AA C
Sbjct: 82 PGPGSGAHPGGSARPDAKEEQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQ 141
Query: 124 AA 125
A
Sbjct: 142 GA 143
>gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 27.7 bits (60), Expect = 2.3
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 35/105 (33%)
Query: 2 ARSATLAAAALALCLLLAP--PGLAWYKPAAGHSSYSV-----------GRAAGLLSGLR 48
A +A + AL+ L LA PG WY+ H + ++ G A L+G+R
Sbjct: 190 AHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVR 249
Query: 49 RSP----------------------YARRSQPYRGAEPPGGAGAS 71
P +AR QP RG + G AG S
Sbjct: 250 LPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRS 294
>gi|239748084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 27.7 bits (60), Expect = 2.3
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 35/105 (33%)
Query: 2 ARSATLAAAALALCLLLAP--PGLAWYKPAAGHSSYSV-----------GRAAGLLSGLR 48
A +A + AL+ L LA PG WY+ H + ++ G A L+G+R
Sbjct: 190 AHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVR 249
Query: 49 RSP----------------------YARRSQPYRGAEPPGGAGAS 71
P +AR QP RG + G AG S
Sbjct: 250 LPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRS 294
>gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 25 WYKPAAGHSSYSVGRAAGLLS---GLRRSPYARRSQPYRGAEPPGGAGASPELQLHPRLR 81
W PA G GR AG L+ GL +P A S PP P ++L P L
Sbjct: 4 WSLPARGPLQ---GRLAGWLAVRAGLLAAPAAVHSPAEVHGSPPASLCPRPSVKLRPGLT 60
Query: 82 SLAV 85
++A+
Sbjct: 61 AMAL 64
>gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 25 WYKPAAGHSSYSVGRAAGLLS---GLRRSPYARRSQPYRGAEPPGGAGASPELQLHPRLR 81
W PA G GR AG L+ GL +P A S PP P ++L P L
Sbjct: 4 WSLPARGPLQ---GRLAGWLAVRAGLLAAPAAVHSPAEVHGSPPASLCPRPSVKLRPGLT 60
Query: 82 SLAV 85
++A+
Sbjct: 61 AMAL 64
>gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo
sapiens]
Length = 483
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 25 WYKPAAGHSSYSVGRAAGLLS---GLRRSPYARRSQPYRGAEPPGGAGASPELQLHPRLR 81
W PA G GR AG L+ GL +P A S PP P ++L P L
Sbjct: 4 WSLPARGPLQ---GRLAGWLAVRAGLLAAPAAVHSPAEVHGSPPASLCPRPSVKLRPGLT 60
Query: 82 SLAV 85
++A+
Sbjct: 61 AMAL 64
>gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 25 WYKPAAGHSSYSVGRAAGLLS---GLRRSPYARRSQPYRGAEPPGGAGASPELQLHPRLR 81
W PA G GR AG L+ GL +P A S PP P ++L P L
Sbjct: 4 WSLPARGPLQ---GRLAGWLAVRAGLLAAPAAVHSPAEVHGSPPASLCPRPSVKLRPGLT 60
Query: 82 SLAV 85
++A+
Sbjct: 61 AMAL 64
>gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 25 WYKPAAGHSSYSVGRAAGLLS---GLRRSPYARRSQPYRGAEPPGGAGASPELQLHPRLR 81
W PA G GR AG L+ GL +P A S PP P ++L P L
Sbjct: 4 WSLPARGPLQ---GRLAGWLAVRAGLLAAPAAVHSPAEVHGSPPASLCPRPSVKLRPGLT 60
Query: 82 SLAV 85
++A+
Sbjct: 61 AMAL 64
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,870,204
Number of Sequences: 37866
Number of extensions: 300743
Number of successful extensions: 1055
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1003
Number of HSP's gapped (non-prelim): 112
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.