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Search of human proteins with 115527088
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|115527088 transmembrane and ubiquitin-like domain containing
2 isoform a [Homo sapiens]
(301 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|115527090 transmembrane and ubiquitin-like domain containing ... 598 e-171
gi|115527092 transmembrane and ubiquitin-like domain containing ... 598 e-171
gi|115527088 transmembrane and ubiquitin-like domain containing ... 598 e-171
gi|13899257 transmembrane and ubiquitin-like domain containing 1... 172 2e-43
gi|209862889 transmembrane and ubiquitin-like domain containing ... 172 2e-43
gi|28269687 zygote arrest 1 [Homo sapiens] 42 7e-04
gi|16753207 ubiquilin 2 [Homo sapiens] 40 0.003
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 38 0.010
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 37 0.016
gi|8567418 ubiquilin 3 [Homo sapiens] 37 0.028
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 35 0.062
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 35 0.062
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 35 0.062
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 35 0.062
gi|190358526 hypothetical protein LOC54785 [Homo sapiens] 35 0.081
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 34 0.14
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 34 0.14
gi|30795231 brain abundant, membrane attached signal protein 1 [... 34 0.18
gi|153070260 myristoylated alanine-rich protein kinase C substra... 34 0.18
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 33 0.24
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 33 0.24
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 33 0.24
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 33 0.24
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 33 0.31
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens] 33 0.31
gi|87299628 biorientation of chromosomes in cell division 1-like... 33 0.31
gi|157743252 pecanex-like 3 [Homo sapiens] 33 0.31
gi|19924099 synapsin I isoform Ia [Homo sapiens] 33 0.40
gi|19924097 synapsin I isoform Ib [Homo sapiens] 33 0.40
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 32 0.53
>gi|115527090 transmembrane and ubiquitin-like domain containing 2
isoform b [Homo sapiens]
Length = 321
Score = 598 bits (1543), Expect = e-171
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MELSDVTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLH 60
MELSDVTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLH
Sbjct: 21 MELSDVTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLH 80
Query: 61 LGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDI 120
LGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDI
Sbjct: 81 LGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDI 140
Query: 121 QGLPKRQAGAGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDTVGALK 180
QGLPKRQAGAGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDTVGALK
Sbjct: 141 QGLPKRQAGAGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDTVGALK 200
Query: 181 SKYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSA 240
SKYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSA
Sbjct: 201 SKYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSA 260
Query: 241 TEPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMYG 300
TEPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMYG
Sbjct: 261 TEPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMYG 320
Query: 301 R 301
R
Sbjct: 321 R 321
>gi|115527092 transmembrane and ubiquitin-like domain containing 2
isoform a [Homo sapiens]
Length = 301
Score = 598 bits (1543), Expect = e-171
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MELSDVTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLH 60
MELSDVTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLH
Sbjct: 1 MELSDVTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLH 60
Query: 61 LGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDI 120
LGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDI
Sbjct: 61 LGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDI 120
Query: 121 QGLPKRQAGAGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDTVGALK 180
QGLPKRQAGAGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDTVGALK
Sbjct: 121 QGLPKRQAGAGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDTVGALK 180
Query: 181 SKYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSA 240
SKYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSA
Sbjct: 181 SKYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSA 240
Query: 241 TEPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMYG 300
TEPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMYG
Sbjct: 241 TEPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMYG 300
Query: 301 R 301
R
Sbjct: 301 R 301
>gi|115527088 transmembrane and ubiquitin-like domain containing 2
isoform a [Homo sapiens]
Length = 301
Score = 598 bits (1543), Expect = e-171
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MELSDVTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLH 60
MELSDVTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLH
Sbjct: 1 MELSDVTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLH 60
Query: 61 LGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDI 120
LGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDI
Sbjct: 61 LGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDI 120
Query: 121 QGLPKRQAGAGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDTVGALK 180
QGLPKRQAGAGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDTVGALK
Sbjct: 121 QGLPKRQAGAGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDTVGALK 180
Query: 181 SKYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSA 240
SKYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSA
Sbjct: 181 SKYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSA 240
Query: 241 TEPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMYG 300
TEPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMYG
Sbjct: 241 TEPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMYG 300
Query: 301 R 301
R
Sbjct: 301 R 301
>gi|13899257 transmembrane and ubiquitin-like domain containing 1
isoform 1 [Homo sapiens]
Length = 246
Score = 172 bits (437), Expect = 2e-43
Identities = 111/298 (37%), Positives = 152/298 (51%), Gaps = 58/298 (19%)
Query: 6 VTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLHLGHVD 65
+TLIEGVG+EV V+ V+ +L L LAW+ST+ A+ G D
Sbjct: 1 MTLIEGVGDEVTVLFSVLACLLVLALAWVSTHTAEGG----------------------D 38
Query: 66 HLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPK 125
L G P P++ PS GE G T PSL H
Sbjct: 39 PLPQPSGTPTPSQ---PSAAMAATDSMRGEAPGAET----------PSLRH--------- 76
Query: 126 RQAGAGSSSPEAPLRSEDSTCLPPSPGL----ITVRLKFLNDTEELAVARPEDTVGALKS 181
G ++ P S T PP+P + +RLKFLND+E++A A P DT+G+LK
Sbjct: 77 ----RGQAAQPEP--STGFTATPPAPDSPQEPLVLRLKFLNDSEQVARAWPHDTIGSLKR 130
Query: 182 KYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSAT 241
FPG+E Q++LIYQG+LL D +TL SL++ NCV+HCH S GP P +
Sbjct: 131 TQFPGREQQVRLIYQGQLLGDDTQTLGSLHLPPNCVLHCH----VSTRVGPPNPPCPPGS 186
Query: 242 EPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMY 299
EP G+ +GSL++P+ ++LL ++WY +I YR FF AT+ L G T+ S L F MY
Sbjct: 187 EPGPSGLEIGSLLLPLLLLLLLLLWYCQIQYRPFFPLTATLGLAGFTLLLSLLAFAMY 244
>gi|209862889 transmembrane and ubiquitin-like domain containing 1
isoform 2 [Homo sapiens]
Length = 246
Score = 172 bits (437), Expect = 2e-43
Identities = 111/298 (37%), Positives = 152/298 (51%), Gaps = 58/298 (19%)
Query: 6 VTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLHLGHVD 65
+TLIEGVG+EV V+ V+ +L L LAW+ST+ A+ G D
Sbjct: 1 MTLIEGVGDEVTVLFSVLACLLVLALAWVSTHTAEGG----------------------D 38
Query: 66 HLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPK 125
L G P P++ PS GE G T PSL H
Sbjct: 39 PLPQPSGTPTPSQ---PSAAMAATDSMRGEAPGAET----------PSLRH--------- 76
Query: 126 RQAGAGSSSPEAPLRSEDSTCLPPSPGL----ITVRLKFLNDTEELAVARPEDTVGALKS 181
G ++ P S T PP+P + +RLKFLND+E++A A P DT+G+LK
Sbjct: 77 ----RGQAAQPEP--STGFTATPPAPDSPQEPLVLRLKFLNDSEQVARAWPHDTIGSLKR 130
Query: 182 KYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSAT 241
FPG+E Q++LIYQG+LL D +TL SL++ NCV+HCH S GP P +
Sbjct: 131 TQFPGREQQVRLIYQGQLLGDDTQTLGSLHLPPNCVLHCH----VSTRVGPPNPPCPPGS 186
Query: 242 EPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMY 299
EP G+ +GSL++P+ ++LL ++WY +I YR FF AT+ L G T+ S L F MY
Sbjct: 187 EPGPSGLEIGSLLLPLLLLLLLLLWYCQIQYRPFFPLTATLGLAGFTLLLSLLAFAMY 244
>gi|28269687 zygote arrest 1 [Homo sapiens]
Length = 424
Score = 42.0 bits (97), Expect = 7e-04
Identities = 35/101 (34%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 70 GQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQAG 129
G+ P P L P EG + + D GEA A V S E D LP R+A
Sbjct: 211 GERGPPPARLQGPEEGEVWTKKAPRRPQSDDDGEAQAA--VRASWEQPADGPELPPREAQ 268
Query: 130 AGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELAVA 170
G ++P + LRS PPS G R + D E AVA
Sbjct: 269 EGEAAPRSALRSPGQ---PPSAG----RARDGGDGREAAVA 302
>gi|16753207 ubiquilin 2 [Homo sapiens]
Length = 624
Score = 39.7 bits (91), Expect = 0.003
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 132 SSSPEAPLR----SEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDT-VGALK---SKY 183
SS P P R ++ S P P +I V +K + EE AV PE++ V K SK
Sbjct: 7 SSGPPRPSRGPAAAQGSAAAPAEPKIIKVTVKTPKEKEEFAV--PENSSVQQFKEAISKR 64
Query: 184 FPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIH 219
F Q Q+ LI+ G++L+D TL I D +H
Sbjct: 65 FKSQTDQLVLIFAGKILKD-QDTLIQHGIHDGLTVH 99
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 38.1 bits (87), Expect = 0.010
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 70 GQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVE 111
G+G E E EG E EE GEG+G+ GE G G G E
Sbjct: 893 GEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEE 934
Score = 31.6 bits (70), Expect = 0.90
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 70 GQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEA------GAGGGVEPSLE 115
G+G E E EG E EE GEG G+ GE G G G E E
Sbjct: 876 GEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEE 927
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 70 GQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVE 111
G+G E E EG +E+ E GE G+ GE G G G E
Sbjct: 946 GEGEEEEGEW----EGEEEEGEGEGEEEGEGEGEEGEGEGEE 983
Score = 30.4 bits (67), Expect = 2.0
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 70 GQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVE 111
G+G E E EG + EE EG G+ GE G G G E
Sbjct: 840 GEGEEEEGE-GEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEE 880
Score = 30.0 bits (66), Expect = 2.6
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 70 GQGNPEPTELP-HPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQA 128
G+G E E EG E EE GE G+ GE G E E +++G + +
Sbjct: 970 GEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEE 1029
Query: 129 GAGSSSPE 136
G G E
Sbjct: 1030 GEGEGEEE 1037
Score = 29.3 bits (64), Expect = 4.4
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 70 GQGNPEPTELPHPSEGND-EKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQA 128
G+G E E EG + E EE EG G+ E G G G E +G + +
Sbjct: 847 GEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEG-------EGEGEEEE 899
Query: 129 GAGSSSPEAPLRSED 143
G G E E+
Sbjct: 900 GEGEGEEEGEGEGEE 914
Score = 29.3 bits (64), Expect = 4.4
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 71 QGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQA-G 129
+G E E EG +E E EG G+ E G G G E E + +G + + G
Sbjct: 952 EGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEG 1011
Query: 130 AGSSSPEAPLRSE 142
G E + E
Sbjct: 1012 EGEEEEEGEVEGE 1024
Score = 28.9 bits (63), Expect = 5.8
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 84 EGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQAGAGSSSPE 136
EG E EE GEG G+ GE G G E E + +G + + G G E
Sbjct: 873 EGEGEGEEEEGEGEGEEEGE-GEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEE 924
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 37.4 bits (85), Expect = 0.016
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 154 ITVRLKFLNDTEELAVARPEDTVGALK---SKYFPGQESQMKLIYQGRLLQDPARTLRSL 210
I V +K D EE+ + +V K S+ F Q+ Q+ LI+ G++L+D TL
Sbjct: 13 IRVTVKTPKDKEEIVIC-DRASVKEFKEEISRRFKAQQDQLVLIFAGKILKD-GDTLNQH 70
Query: 211 NITDNCVIH-CHRSPPGSAVPGPSASLAPSATEPPS 245
I D +H ++P + P + + +PS +P S
Sbjct: 71 GIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPAS 106
>gi|8567418 ubiquilin 3 [Homo sapiens]
Length = 655
Score = 36.6 bits (83), Expect = 0.028
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 24/123 (19%)
Query: 151 PGLITVRLKFLNDTEELAVARPEDTVGALK---SKYFPGQESQMKLIYQGRLLQDPARTL 207
P LI V +K D E+ +V T+ LK S+ F Q+ LI+ G++L+DP +L
Sbjct: 19 PHLIKVTVKTPKDKEDFSVT-DTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSL 76
Query: 208 RSLNITDNCVIHC-----HRSP----PGSAVP--GPSASLAPS------ATEPP--SLGV 248
+ D +H HR+ P ++VP GPS P A PP SLG+
Sbjct: 77 AQCGVRDGLTVHLVIKRQHRAMGNECPAASVPTQGPSPGSLPQPSSIYPADGPPAFSLGL 136
Query: 249 NVG 251
G
Sbjct: 137 LTG 139
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 35.4 bits (80), Expect = 0.062
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 71 QGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQAGA 130
+GNP P+E+ H +K E +G + GE G G P + L ++GLP
Sbjct: 939 KGNPGPSEISHVI---GDKGEPGLKGFAGNPGEKGNRG--VPGMPGLKGLKGLP------ 987
Query: 131 GSSSPEAPLRSEDSTCLPPSPGL 153
G + P P ST P PGL
Sbjct: 988 GPAGPPGPRGDLGSTGNPGEPGL 1010
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 35.4 bits (80), Expect = 0.062
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 71 QGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQAGA 130
+GNP P+E+ H +K E +G + GE G G P + L ++GLP
Sbjct: 939 KGNPGPSEISHVI---GDKGEPGLKGFAGNPGEKGNRG--VPGMPGLKGLKGLP------ 987
Query: 131 GSSSPEAPLRSEDSTCLPPSPGL 153
G + P P ST P PGL
Sbjct: 988 GPAGPPGPRGDLGSTGNPGEPGL 1010
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 35.4 bits (80), Expect = 0.062
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 71 QGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQAGA 130
+GNP P+E+ H +K E +G + GE G G P + L ++GLP
Sbjct: 939 KGNPGPSEISHVI---GDKGEPGLKGFAGNPGEKGNRG--VPGMPGLKGLKGLP------ 987
Query: 131 GSSSPEAPLRSEDSTCLPPSPGL 153
G + P P ST P PGL
Sbjct: 988 GPAGPPGPRGDLGSTGNPGEPGL 1010
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 35.4 bits (80), Expect = 0.062
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 71 QGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQAGA 130
+GNP P+E+ H +K E +G + GE G G P + L ++GLP
Sbjct: 939 KGNPGPSEISHVI---GDKGEPGLKGFAGNPGEKGNRG--VPGMPGLKGLKGLP------ 987
Query: 131 GSSSPEAPLRSEDSTCLPPSPGL 153
G + P P ST P PGL
Sbjct: 988 GPAGPPGPRGDLGSTGNPGEPGL 1010
>gi|190358526 hypothetical protein LOC54785 [Homo sapiens]
Length = 357
Score = 35.0 bits (79), Expect = 0.081
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 17/103 (16%)
Query: 83 SEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQG-----------------LPK 125
S D +E G + E+GAGGG ++ L+++G L
Sbjct: 166 SRSLDGLSEACGGAGSSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKI 225
Query: 126 RQAGAGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELA 168
R +GA P AP R + P+P + + + L D E L+
Sbjct: 226 RLSGAPPPPPSAPARPCPAPAPTPTPAIPPIDPEVLRDLERLS 268
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 34.3 bits (77), Expect = 0.14
Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 66 HLVAGQGN-------PEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLL 118
H +A +G+ +P P P+ E+A GRG + A G +P L LL
Sbjct: 204 HFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLL 263
Query: 119 DIQGL----------PKRQAGAGSSSP---EAPLRSEDSTCLPPSPGLITVRLKFLNDTE 165
+ P Q GS+SP APL + L P P R +
Sbjct: 264 LASAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGH 323
Query: 166 EL----AVARPEDTVGALKSKYFPGQESQMKLIYQGRLLQDP 203
L +++R + VGA + + G+E +++ QG L P
Sbjct: 324 GLPLPRSLSRGGEVVGARRRR--GGEERRVRGRRQGCALGSP 363
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 34.3 bits (77), Expect = 0.14
Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 66 HLVAGQGN-------PEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLL 118
H +A +G+ +P P P+ E+A GRG + A G +P L LL
Sbjct: 204 HFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLL 263
Query: 119 DIQGL----------PKRQAGAGSSSP---EAPLRSEDSTCLPPSPGLITVRLKFLNDTE 165
+ P Q GS+SP APL + L P P R +
Sbjct: 264 LASAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGH 323
Query: 166 EL----AVARPEDTVGALKSKYFPGQESQMKLIYQGRLLQDP 203
L +++R + VGA + + G+E +++ QG L P
Sbjct: 324 GLPLPRSLSRGGEVVGARRRR--GGEERRVRGRRQGCALGSP 363
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 33.9 bits (76), Expect = 0.18
Identities = 47/184 (25%), Positives = 68/184 (36%), Gaps = 32/184 (17%)
Query: 71 QGNP---EPTELPHPSEGND--EKAEEAGEGRGDST-GEAGAGGGVE--PSLEHLLDIQG 122
+G P EP P+E + EK ++ EG+ + GE A E P E
Sbjct: 34 EGTPKESEPQAAAEPAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKEEAPKAE------- 86
Query: 123 LPKRQAGAGSSSPEAPLRSEDSTCLP-PSPGLITVRLKFLNDTEELAVARPEDTVGALKS 181
P++ GA + E P E P P+ G + E A A E A
Sbjct: 87 -PEKTEGAAEAKAEPPKAPEQEQAAPGPAAGGEAPK------AAEAAAAPAESAAPAAGE 139
Query: 182 KYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSAT 241
+ P +E +G + A + T + S PGS+ PS+ P+AT
Sbjct: 140 E--PSKE-------EGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSEAAPSSKETPAAT 190
Query: 242 EPPS 245
E PS
Sbjct: 191 EAPS 194
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 82 PSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQAGAGSSSPEAPLRS 141
PS+ ++KAEEAG + AG G P E + A A SS+ AP +
Sbjct: 261 PSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQE----AAPAEEPAAAAASSACAAPSQE 316
Query: 142 EDSTCLPPSP 151
C P +P
Sbjct: 317 AQPECSPEAP 326
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 33.5 bits (75), Expect = 0.24
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 190 QMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSAT 241
+ +LIYQGR+LQD + L+ N+ + R+PP + +P ++S SA+
Sbjct: 56 KQRLIYQGRVLQDD-KKLQEYNVGGKVIHLVERAPPQTHLPSGASSGTGSAS 106
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 33.5 bits (75), Expect = 0.24
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 190 QMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSAT 241
+ +LIYQGR+LQD + L+ N+ + R+PP + +P ++S SA+
Sbjct: 56 KQRLIYQGRVLQDD-KKLQEYNVGGKVIHLVERAPPQTHLPSGASSGTGSAS 106
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 33.5 bits (75), Expect = 0.24
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 190 QMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSAT 241
+ +LIYQGR+LQD + L+ N+ + R+PP + +P ++S SA+
Sbjct: 56 KQRLIYQGRVLQDD-KKLQEYNVGGKVIHLVERAPPQTHLPSGASSGTGSAS 106
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 33.5 bits (75), Expect = 0.24
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 190 QMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSAT 241
+ +LIYQGR+LQD + L+ N+ + R+PP + +P ++S SA+
Sbjct: 56 KQRLIYQGRVLQDD-KKLQEYNVGGKVIHLVERAPPQTHLPSGASSGTGSAS 106
>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
Length = 498
Score = 33.1 bits (74), Expect = 0.31
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 30/118 (25%)
Query: 45 QLLGAIVSAGDTSVLHLGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEA 104
+L+ GDTS L D V G+G+P E P + KA G GRG
Sbjct: 149 ELIAYFEKVGDTS-LDPNDFDFTVTGRGSPSRREQKPPKKPKSPKAPGTGRGRG------ 201
Query: 105 GAGGGVEPSLEHLLDIQGLPKRQAGAGSSSPEAPLRS--EDSTCLPPSPGLITVRLKF 160
R G+G++ P+A + L SPG + V++ F
Sbjct: 202 ---------------------RPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPF 238
>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
Length = 486
Score = 33.1 bits (74), Expect = 0.31
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 30/118 (25%)
Query: 45 QLLGAIVSAGDTSVLHLGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEA 104
+L+ GDTS L D V G+G+P E P + KA G GRG
Sbjct: 137 ELIAYFEKVGDTS-LDPNDFDFTVTGRGSPSRREQKPPKKPKSPKAPGTGRGRG------ 189
Query: 105 GAGGGVEPSLEHLLDIQGLPKRQAGAGSSSPEAPLRS--EDSTCLPPSPGLITVRLKF 160
R G+G++ P+A + L SPG + V++ F
Sbjct: 190 ---------------------RPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPF 226
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 33.1 bits (74), Expect = 0.31
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 23/140 (16%)
Query: 69 AGQGNPEPT-ELPHPSEGN--------DEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLD 119
AG+G E T L + E N ++K+ E G G ST AG G+E +
Sbjct: 2445 AGRGQKESTLHLINAEEKNVLLNSLQKEDKSPETGTAGGSSTASYSAGRGLEGNANSPAH 2504
Query: 120 IQGLPKRQAGAGSSSPEAPLR--------SEDSTCLPPSPGLITVRLKFLNDTEELAVAR 171
++G P++ +G + P +R + + +PP G + FL ++
Sbjct: 2505 LRG-PEQTSGQTAKDPSVSIRYLAAVNTGAIKADDMPPVQGTVAEH-SFLPAEQQ----G 2558
Query: 172 PEDTVGALKSKYFPGQESQM 191
ED + +K GQES++
Sbjct: 2559 SEDNLKTSTTKCITGQESKI 2578
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 33.1 bits (74), Expect = 0.31
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 80 PHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQAGAGSSSPEAPL 139
P + GN ++ G G G + +G+G G P L +Q P R G P +P+
Sbjct: 1860 PENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPL-----LQWPPPRLPG---PPPASPI 1911
Query: 140 RSE-DSTCLPPSPGLIT 155
+E T PP PGL++
Sbjct: 1912 PTEGPRTSRPPGPGLLS 1928
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 32.7 bits (73), Expect = 0.40
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 63 HVDHLVAGQGNPEPTELPHPSEGNDEKAEEAG---EGRGDSTGEAGAGGGVEPSLEHLLD 119
H+ L G+P P LP P+ + A +A +G+G + G G P+
Sbjct: 492 HLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARP--P 549
Query: 120 IQGLPKRQAGAGSSSPEAPLRSEDSTCLPP 149
P+RQAG P+A ++ S PP
Sbjct: 550 ASPSPQRQAG----PPQATRQTSVSGPAPP 575
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 32.7 bits (73), Expect = 0.40
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 63 HVDHLVAGQGNPEPTELPHPSEGNDEKAEEAG---EGRGDSTGEAGAGGGVEPSLEHLLD 119
H+ L G+P P LP P+ + A +A +G+G + G G P+
Sbjct: 492 HLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARP--P 549
Query: 120 IQGLPKRQAGAGSSSPEAPLRSEDSTCLPP 149
P+RQAG P+A ++ S PP
Sbjct: 550 ASPSPQRQAG----PPQATRQTSVSGPAPP 575
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 32.3 bits (72), Expect = 0.53
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 74 PEPTELPHPSEGNDEKAEEA----GEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQAG 129
P+ + P S G ++A A GRG + G GGVEP G + +AG
Sbjct: 230 PDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEP--------PGWSRERAG 281
Query: 130 AGSS--SPEAP 138
AG S SP+ P
Sbjct: 282 AGLSRDSPQVP 292
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,388,401
Number of Sequences: 37866
Number of extensions: 753985
Number of successful extensions: 5101
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 4818
Number of HSP's gapped (non-prelim): 430
length of query: 301
length of database: 18,247,518
effective HSP length: 102
effective length of query: 199
effective length of database: 14,385,186
effective search space: 2862652014
effective search space used: 2862652014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.