Search of human proteins with 224593762

Search of human proteins with 224593762

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224593762 hypothetical protein LOC100130522 isoform 3 [Homo
sapiens]
         (64 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|224593762 hypothetical protein LOC100130522 isoform 3 [Homo s...   139   4e-34
gi|224593760 hypothetical protein LOC100130522 isoform 2 [Homo s...    70   5e-13
gi|224593758 hypothetical protein LOC100130522 isoform 1 [Homo s...    70   5e-13
gi|27894376 cell adhesion molecule with homology to L1CAM precur...    30   0.54 
gi|14719426 galactose-3-O-sulfotransferase 3 [Homo sapiens]            27   2.7  
gi|222352122 hypothetical protein LOC284297 [Homo sapiens]             27   4.6  
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]            26   6.0  
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]            26   6.0  
gi|19923312 v-myc myelocytomatosis viral related oncogene, neuro...    26   6.0  
gi|24308207 leucine rich repeat containing 47 [Homo sapiens]           26   6.0  
gi|149999371 hypothetical protein LOC91056 [Homo sapiens]              26   6.0  
gi|115298678 complement component 3 precursor [Homo sapiens]           26   7.8  
gi|169218213 PREDICTED: similar to complement component C3, part...    26   7.8  
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap...    26   7.8  

>gi|224593762 hypothetical protein LOC100130522 isoform 3 [Homo
          sapiens]
          Length = 64

 Score =  139 bits (351), Expect = 4e-34
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRVVPLNPKTPNVHQLQSHWRYSCGLLLRP 60
          MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRVVPLNPKTPNVHQLQSHWRYSCGLLLRP
Sbjct: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRVVPLNPKTPNVHQLQSHWRYSCGLLLRP 60

Query: 61 TQHT 64
          TQHT
Sbjct: 61 TQHT 64


>gi|224593760 hypothetical protein LOC100130522 isoform 2 [Homo
          sapiens]
          Length = 100

 Score = 69.7 bits (169), Expect = 5e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLR 32
          MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLR
Sbjct: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLR 32


>gi|224593758 hypothetical protein LOC100130522 isoform 1 [Homo
          sapiens]
          Length = 100

 Score = 69.7 bits (169), Expect = 5e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLR 32
          MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLR
Sbjct: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLR 32


>gi|27894376 cell adhesion molecule with homology to L1CAM precursor
           [Homo sapiens]
          Length = 1224

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 23  LDCIRPRLLRVVPLNPKTPNVHQLQSHWRYSC 54
           LD      LRV P NP+ P +H L+ H    C
Sbjct: 525 LDIRNATKLRVSPKNPRIPKLHMLELHCESKC 556


>gi|14719426 galactose-3-O-sulfotransferase 3 [Homo sapiens]
          Length = 431

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 19  PSPVLDCIRPRLLRVVPLNPKTP 41
           P PVLD   PR +RV+P  P+ P
Sbjct: 409 PEPVLDNPPPRPIRVLPRGPQGP 431


>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
          Length = 1573

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 4    PRLSSSLGAHLPCIVPSP---VLDCIRPRLLRVV 34
            P    S G H PC+ P+P   V+ C  P L+ +V
Sbjct: 1461 PTPGQSPGPHGPCVAPTPPVRVMACEPPALVELV 1494


>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 3   PPRLSSSLGAHLPCIVPSPVLDCIRPRLLRVVPLNPKTPNVHQLQSHWRYSCG 55
           PPR S   G H P + PS  L   RP L R +P    T    + +   R   G
Sbjct: 125 PPRPSLPSGPHRPVLPPS-ALAAPRPPLARPLPQGSVTAREQEQRPRSRRRAG 176


>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 285

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 3   PPRLSSSLGAHLPCIVPSPVLDCIRPRLLRVVPLNPKTPNVHQLQSHWRYSCG 55
           PPR S   G H P + PS  L   RP L R +P    T    + +   R   G
Sbjct: 125 PPRPSLPSGPHRPVLPPS-ALAAPRPPLARPLPQGSVTAREQEQRPRSRRRAG 176


>gi|19923312 v-myc myelocytomatosis viral related oncogene,
           neuroblastoma derived [Homo sapiens]
          Length = 464

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 11  GAHLPCIVPSPVLDCIRPRLLRVVPLNPKTP 41
           GA LP  +  P  +C+ P ++   P+N + P
Sbjct: 172 GAALPAELAHPAAECVDPAVVFPFPVNKREP 202


>gi|24308207 leucine rich repeat containing 47 [Homo sapiens]
          Length = 583

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 5   RLSSSLGAHLPCIVPSPVLDCIR-PRLLRVVPLNPKTPNVHQL 46
           R +++L  H    V  P+L C R P+ L++VPL  K     +L
Sbjct: 370 RTAATLATHELRAVKGPLLYCARPPQDLKIVPLGRKEAKAKEL 412


>gi|149999371 hypothetical protein LOC91056 [Homo sapiens]
          Length = 821

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 13  HLPCIVPSPVLDCIRPRLLRVVPLNPKTPNVHQLQSHWRYS 53
           H+PC+ P       RP    ++PL P+ P   +L  H  Y+
Sbjct: 654 HVPCLCPG------RPARPLLLPLQPRCPAPARLDVHALYT 688


>gi|115298678 complement component 3 precursor [Homo sapiens]
          Length = 1663

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 15/46 (32%), Positives = 19/46 (41%)

Query: 2  SPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRVVPLNPKTPNVHQLQ 47
          S P L   L  HLP  + SP+   I P +LR+          H  Q
Sbjct: 5  SGPSLLLLLLTHLPLALGSPMYSIITPNILRLESEETMVLEAHDAQ 50


>gi|169218213 PREDICTED: similar to complement component C3,
          partial [Homo sapiens]
          Length = 1295

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 15/46 (32%), Positives = 19/46 (41%)

Query: 2  SPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRVVPLNPKTPNVHQLQ 47
          S P L   L  HLP  + SP+   I P +LR+          H  Q
Sbjct: 5  SGPSLLLLLLTHLPLALGSPMYSIITPNILRLESEETMVLEAHDAQ 50


>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
           sapiens]
          Length = 501

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)

Query: 2   SPPRLSSS----LGAHLPCIVPSPVLD 24
           +PPRLS      LG H+ C  PSP L+
Sbjct: 394 APPRLSFRKLVLLGPHVLCAPPSPTLE 420


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.139    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,340,501
Number of Sequences: 37866
Number of extensions: 138513
Number of successful extensions: 302
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 15
length of query: 64
length of database: 18,247,518
effective HSP length: 37
effective length of query: 27
effective length of database: 16,846,476
effective search space: 454854852
effective search space used: 454854852
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.