Guide to the Human Genome
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Name: LOC100130522 Sequence: fasta or formatted (64aa) NCBI GI: 224593762
Description:

hypothetical protein LOC100130522 isoform 3

Not currently referenced in the text

Other entries for this name:
alt prot {100aa} hypothetical protein LOC100130522 isoform 1
alt prot {100aa} hypothetical protein LOC100130522 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.6          1           1
 C cysteine            4.7          3           1
 D aspartate           1.6          1           1
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine             3.1          2           1
 H histidine           6.2          4           1
 I isoleucine          3.1          2           1
 K lysine              1.6          1           1
 L leucine            17.2         11           3
 M methionine          1.6          1           1
 N asparagine          3.1          2           1
 P proline            15.6         10           2
 Q glutamine           4.7          3           1
 R arginine            9.4          6           1
 S serine             10.9          7           3
 T threonine           4.7          3           1
 V valine              7.8          5           2
 W tryptophan          1.6          1           1
 Y tyrosine            1.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC100130522 isoform 3 
LOC100130522          0.395   hypothetical protein LOC100130522 isoform 2 
LOC100130522          0.395   hypothetical protein LOC100130522 isoform 1 
CHL1                  0.044   cell adhesion molecule with homology to L1CAM precur...
GAL3ST3               0.018   galactose-3-O-sulfotransferase 3 
LOC284297             0.018   hypothetical protein LOC284297 
LOC100131102          0.009   PREDICTED: hypothetical protein 
LOC100131102          0.009   PREDICTED: hypothetical protein 
MYCN                  0.009   v-myc myelocytomatosis viral related oncogene, neuro...
LRRC47                0.009   leucine rich repeat containing 47 
DKFZp761E198          0.009   hypothetical protein LOC91056 
C3                    0.009   complement component 3 precursor 
LOC100133511          0.009   PREDICTED: similar to complement component C3, part...
LENG9                 0.009   leukocyte receptor cluster (LRC) member 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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