Search of human proteins with 221316744

Search of human proteins with 221316744

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens]
         (282 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens]                 543   e-155
gi|21686995 stomatin-like 3 isoform 1 [Homo sapiens]                  530   e-151
gi|38016911 stomatin isoform a [Homo sapiens]                         377   e-105
gi|7657615 podocin [Homo sapiens]                                     254   5e-68
gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]                    128   5e-30
gi|7305503 stomatin (EPB72)-like 2 [Homo sapiens]                     120   1e-27
gi|38016907 stomatin isoform b [Homo sapiens]                          97   1e-20
gi|5031699 flotillin 1 [Homo sapiens]                                  48   8e-06
gi|6005854 prohibitin 2 isoform 2 [Homo sapiens]                       40   0.002
gi|221307584 prohibitin 2 isoform 1 [Homo sapiens]                     40   0.002
gi|154800489 ER lipid raft associated 1 [Homo sapiens]                 37   0.025
gi|154800487 ER lipid raft associated 1 [Homo sapiens]                 37   0.025
gi|4505773 prohibitin [Homo sapiens]                                   33   0.28 
gi|30578410 source of immunodominant MHC-associated peptides [Ho...    31   1.4  
gi|156616275 DNA-directed DNA polymerase delta 1 [Homo sapiens]        29   4.1  
gi|84872173 zinc finger protein 131 [Homo sapiens]                     29   4.1  
gi|222831577 zinc finger protein 286B [Homo sapiens]                   29   5.3  
gi|47933339 RNA binding motif protein 15 [Homo sapiens]                29   5.3  
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]    29   5.3  
gi|221136814 coiled-coil domain containing 154 [Homo sapiens]          28   9.0  
gi|151301228 formin binding protein 3 [Homo sapiens]                   28   9.0  

>gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens]
          Length = 282

 Score =  543 bits (1400), Expect = e-155
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MNSRGELVGVNNKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQ 60
           MNSRGELVGVNNKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQ
Sbjct: 1   MNSRGELVGVNNKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQ 60

Query: 61  ADKAKGPGLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSA 120
           ADKAKGPGLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSA
Sbjct: 61  ADKAKGPGLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSA 120

Query: 121 VANVNDVHQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARV 180
           VANVNDVHQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARV
Sbjct: 121 VANVNDVHQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARV 180

Query: 181 EIKDVRIPVQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRY 240
           EIKDVRIPVQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRY
Sbjct: 181 EIKDVRIPVQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRY 240

Query: 241 LQTLSTVATEKNSTIVFPLPMNILEGIGGVSYDNHKKLPNKA 282
           LQTLSTVATEKNSTIVFPLPMNILEGIGGVSYDNHKKLPNKA
Sbjct: 241 LQTLSTVATEKNSTIVFPLPMNILEGIGGVSYDNHKKLPNKA 282


>gi|21686995 stomatin-like 3 isoform 1 [Homo sapiens]
          Length = 291

 Score =  530 bits (1365), Expect = e-151
 Identities = 275/275 (100%), Positives = 275/275 (100%)

Query: 8   VGVNNKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGP 67
           VGVNNKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGP
Sbjct: 17  VGVNNKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGP 76

Query: 68  GLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDV 127
           GLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDV
Sbjct: 77  GLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDV 136

Query: 128 HQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRI 187
           HQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRI
Sbjct: 137 HQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRI 196

Query: 188 PVQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTV 247
           PVQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTV
Sbjct: 197 PVQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTV 256

Query: 248 ATEKNSTIVFPLPMNILEGIGGVSYDNHKKLPNKA 282
           ATEKNSTIVFPLPMNILEGIGGVSYDNHKKLPNKA
Sbjct: 257 ATEKNSTIVFPLPMNILEGIGGVSYDNHKKLPNKA 291


>gi|38016911 stomatin isoform a [Homo sapiens]
          Length = 288

 Score =  377 bits (968), Expect = e-105
 Identities = 185/263 (70%), Positives = 225/263 (85%)

Query: 12  NKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLIL 71
           +K LG CGWIL + SFL  +ITFPISIWMC+KIIKEYERA++FRLGRI    AKGPGL  
Sbjct: 24  SKGLGPCGWILVAFSFLFTVITFPISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFF 83

Query: 72  VLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQAT 131
           +LPC D F+KVD+RT++ +IPPQEILT+DSVT  VDGVVYYR+ +A  AVAN+ +   AT
Sbjct: 84  ILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSAT 143

Query: 132 FLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQL 191
            LLAQTTLRNVLGT+ LSQIL+ REEIAH++Q+ LDDAT+ WGI+V RVEIKDV++PVQL
Sbjct: 144 RLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQL 203

Query: 192 QRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVATEK 251
           QR+MAAEAEA+REARAKV+AAEGEMNAS++LK ASMV+ ESP ALQLRYLQTL+T+A EK
Sbjct: 204 QRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEK 263

Query: 252 NSTIVFPLPMNILEGIGGVSYDN 274
           NSTIVFPLP+++L+GI G  + +
Sbjct: 264 NSTIVFPLPIDMLQGIIGAKHSH 286


>gi|7657615 podocin [Homo sapiens]
          Length = 383

 Score =  254 bits (650), Expect = 5e-68
 Identities = 122/271 (45%), Positives = 182/271 (67%)

Query: 9   GVNNKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPG 68
           G  +  LG C W+L  +S L +I+TFP SIW C+K+++EYER ++FRLG +   +AKGPG
Sbjct: 92  GTKSSGLGACEWLLVLISLLFIIMTFPFSIWFCVKVVQEYERVIIFRLGHLLPGRAKGPG 151

Query: 69  LILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVH 128
           L   LPC+D + KVDLR  T  IP  EI+T+D    ++D + YYR+ +A   ++++  V 
Sbjct: 152 LFFFLPCLDTYHKVDLRLQTLEIPFHEIVTKDMFIMEIDAICYYRMENASLLLSSLAHVS 211

Query: 129 QATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIP 188
           +A   L QTT++ +L  ++L++IL  R+ IA   +  LD  T +WGI+V R+EIKDVR+P
Sbjct: 212 KAVQFLVQTTMKRLLAHRSLTEILLERKSIAQDAKVALDSVTCIWGIKVERIEIKDVRLP 271

Query: 189 VQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVA 248
             LQ S+A EAEA R+A+ +++AAE E  AS+SL+ A+ +L+ +P A+QLRYL TL +++
Sbjct: 272 AGLQHSLAVEAEAQRQAKVRMIAAEAEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLS 331

Query: 249 TEKNSTIVFPLPMNILEGIGGVSYDNHKKLP 279
           TEK ST+V PLP ++L  +   S      LP
Sbjct: 332 TEKPSTVVLPLPFDLLNCLSSPSNRTQGSLP 362


>gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]
          Length = 398

 Score =  128 bits (322), Expect = 5e-30
 Identities = 66/166 (39%), Positives = 102/166 (61%), Gaps = 2/166 (1%)

Query: 17  VCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILVLPCI 76
           +C  ++  L FLL+++TFPIS W  LKI+  YER +VFRLGRI+  +  GPG++L+LP I
Sbjct: 54  LCHGLISFLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRTPQ--GPGMVLLLPFI 111

Query: 77  DVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQ 136
           D F +VDLRT   N+PP ++ ++D     V   V +RI+  V +V  V D++ AT + AQ
Sbjct: 112 DSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQ 171

Query: 137 TTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEI 182
             +   L  + L +I   + +I+  +   ++D T  WG+ V RVE+
Sbjct: 172 NAMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVEL 217


>gi|7305503 stomatin (EPB72)-like 2 [Homo sapiens]
          Length = 356

 Score =  120 bits (301), Expect = 1e-27
 Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 7/199 (3%)

Query: 45  IKEYERAVVFRLGRIQADKAKGPGLILVLPCIDVFVKVD-LRTVTCNIPPQEILTRDSVT 103
           + + E  VV R+GR    +   PGL +++P +D    V  L+ +  N+P Q  +T D+VT
Sbjct: 41  VPQQEAWVVERMGRFH--RILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVT 98

Query: 104 TQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQ 163
            Q+DGV+Y RI     A   V D   A   LAQTT+R+ LG  +L ++   RE +  SI 
Sbjct: 99  LQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIV 158

Query: 164 TLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARAKVLAAEG----EMNAS 219
             ++ A + WGIR  R EIKD+ +P +++ SM  + EA R  RA VL +EG     +N +
Sbjct: 159 DAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVA 218

Query: 220 KSLKSASMVLAESPIALQL 238
           +  K A ++ +E+  A Q+
Sbjct: 219 EGKKQAQILASEAEKAEQI 237


>gi|38016907 stomatin isoform b [Homo sapiens]
          Length = 123

 Score = 97.4 bits (241), Expect = 1e-20
 Identities = 47/67 (70%), Positives = 59/67 (88%)

Query: 208 KVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVATEKNSTIVFPLPMNILEGI 267
           KV+AAEGEMNAS++LK ASMV+ ESP ALQLRYLQTL+T+A EKNSTIVFPLP+++L+GI
Sbjct: 55  KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI 114

Query: 268 GGVSYDN 274
            G  + +
Sbjct: 115 IGAKHSH 121



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 23/34 (67%), Positives = 28/34 (82%)

Query: 12 NKRLGVCGWILFSLSFLLVIITFPISIWMCLKII 45
          +K LG CGWIL + SFL  +ITFPISIWMC+K+I
Sbjct: 24 SKGLGPCGWILVAFSFLFTVITFPISIWMCIKVI 57


>gi|5031699 flotillin 1 [Homo sapiens]
          Length = 427

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 23/193 (11%)

Query: 68  GLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYS------AVSAV 121
           G + VLPCI    ++ L T+T N+  +++ TR  V   V G+   +I        A +  
Sbjct: 27  GRVFVLPCIQQIQRISLNTLTLNVKSEKVYTRHGVPISVTGIAQVKIQGQNKEMLAAACQ 86

Query: 122 ANVNDVHQATFLLAQTTL----RNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRV 177
             +         +A  TL    R ++   T+ +I   R++ +  +  +        GI V
Sbjct: 87  MFLGKTEAEIAHIALETLEGHQRAIMAHMTVEEIYKDRQKFSEQVFKVASSDLVNMGISV 146

Query: 178 ARVEIKDVR------------IPVQLQR-SMAAEAEATREARAKVLAAEGEMNASKSLKS 224
               +KD+                Q+Q+ +   EAEA R+A  +   A+ E  +++ L  
Sbjct: 147 VSYTLKDIHDDQDYLHSLGKARTAQVQKDARIGEAEAKRDAGIREAKAKQEKVSAQYLSE 206

Query: 225 ASMVLAESPIALQ 237
             M  A+    L+
Sbjct: 207 IEMAKAQRDYELK 219


>gi|6005854 prohibitin 2 isoform 2 [Homo sapiens]
          Length = 299

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 39/232 (16%)

Query: 50  RAVVF-RLGRIQADKAKGPGLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDG 108
           RA+ F R+G +Q D     GL   +P     +  D+R       P++I +          
Sbjct: 48  RAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRA-----RPRKISSPTGSKDLQMV 102

Query: 109 VVYYRIYSAVSAVANVNDVHQATFL---------LAQTTLRNVLGTQTLSQILAGREEI- 158
            +  R+ S  +A   +  ++Q   L         +    L++V+     SQ++  R ++ 
Sbjct: 103 NISLRVLSRPNA-QELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVS 161

Query: 159 ----------AHSIQTLLDDA--TELWGIR--VARVEIKDVRIPVQLQRSMAAEAEATRE 204
                     A     +LDD   TEL   R   A VE K V    + QR+     +A +E
Sbjct: 162 LLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVA-QQEAQRAQFLVEKAKQE 220

Query: 205 ARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTL----STVATEKN 252
            R K++ AEGE  A+K L  A   L+++P  ++LR ++       T+AT +N
Sbjct: 221 QRQKIVQAEGEAEAAKMLGEA---LSKNPGYIKLRKIRAAQNISKTIATSQN 269


>gi|221307584 prohibitin 2 isoform 1 [Homo sapiens]
          Length = 299

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 39/232 (16%)

Query: 50  RAVVF-RLGRIQADKAKGPGLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDG 108
           RA+ F R+G +Q D     GL   +P     +  D+R       P++I +          
Sbjct: 48  RAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRA-----RPRKISSPTGSKDLQMV 102

Query: 109 VVYYRIYSAVSAVANVNDVHQATFL---------LAQTTLRNVLGTQTLSQILAGREEI- 158
            +  R+ S  +A   +  ++Q   L         +    L++V+     SQ++  R ++ 
Sbjct: 103 NISLRVLSRPNA-QELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVS 161

Query: 159 ----------AHSIQTLLDDA--TELWGIR--VARVEIKDVRIPVQLQRSMAAEAEATRE 204
                     A     +LDD   TEL   R   A VE K V    + QR+     +A +E
Sbjct: 162 LLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVA-QQEAQRAQFLVEKAKQE 220

Query: 205 ARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTL----STVATEKN 252
            R K++ AEGE  A+K L  A   L+++P  ++LR ++       T+AT +N
Sbjct: 221 QRQKIVQAEGEAEAAKMLGEA---LSKNPGYIKLRKIRAAQNISKTIATSQN 269


>gi|154800489 ER lipid raft associated 1 [Homo sapiens]
          Length = 348

 Score = 36.6 bits (83), Expect = 0.025
 Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 14/220 (6%)

Query: 36  ISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILVLPCIDVFVKVDLRTVTCNIPPQE 95
           + ++  +  I+E   AV +R G +    + GPG  ++LP I  F  V     T  +    
Sbjct: 19  VLLYASIHKIEEGHLAVYYRGGALLTSPS-GPGYHIMLPFITTFRSVQTTLQTDEVKNVP 77

Query: 96  ILTRDSVTTQVDGVVYYRI---YSAVSAVANVNDVHQATFLLAQT--TLRNVLGTQTLSQ 150
             T   V   +D +    +   Y+    V N    +  T +  +    L       TL +
Sbjct: 78  CGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQE 137

Query: 151 I-LAGREEIAHSIQTLLDDATELW--GIRVARVEIKDVRIPVQLQRSM-AAEAEATR--- 203
           + +   ++I  +++  L     L   G+ +  V +   +IP  ++R+    EAE T+   
Sbjct: 138 VYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLI 197

Query: 204 -EARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQ 242
              + KV+  E E    K++  A  +   + I  Q + ++
Sbjct: 198 AAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVME 237


>gi|154800487 ER lipid raft associated 1 [Homo sapiens]
          Length = 348

 Score = 36.6 bits (83), Expect = 0.025
 Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 14/220 (6%)

Query: 36  ISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILVLPCIDVFVKVDLRTVTCNIPPQE 95
           + ++  +  I+E   AV +R G +    + GPG  ++LP I  F  V     T  +    
Sbjct: 19  VLLYASIHKIEEGHLAVYYRGGALLTSPS-GPGYHIMLPFITTFRSVQTTLQTDEVKNVP 77

Query: 96  ILTRDSVTTQVDGVVYYRI---YSAVSAVANVNDVHQATFLLAQT--TLRNVLGTQTLSQ 150
             T   V   +D +    +   Y+    V N    +  T +  +    L       TL +
Sbjct: 78  CGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQE 137

Query: 151 I-LAGREEIAHSIQTLLDDATELW--GIRVARVEIKDVRIPVQLQRSM-AAEAEATR--- 203
           + +   ++I  +++  L     L   G+ +  V +   +IP  ++R+    EAE T+   
Sbjct: 138 VYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLI 197

Query: 204 -EARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQ 242
              + KV+  E E    K++  A  +   + I  Q + ++
Sbjct: 198 AAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVME 237


>gi|4505773 prohibitin [Homo sapiens]
          Length = 272

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 41/219 (18%), Positives = 97/219 (44%), Gaps = 25/219 (11%)

Query: 50  RAVVFRLGRIQADKAKGPGLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVD-- 107
           RAV+F   R   D   G G   ++P +   +  D R+   N+P   ++T       V+  
Sbjct: 35  RAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVP---VITGSKDLQNVNIT 91

Query: 108 -GVVYYRIYSAVSAV-ANVNDVHQATFLLAQTT--LRNVLGTQTLSQILAGREEIAHSIQ 163
             +++  + S +  +  ++ + +    L + TT  L++V+      +++  RE ++  + 
Sbjct: 92  LRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVS 151

Query: 164 TLLDDATELWGIRVARVEI------KDVRIPVQLQRSMAAEAE--------ATREARAKV 209
             L +    +G+ +  V +      K+    V+ ++    EAE        A ++ +A +
Sbjct: 152 DDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAI 211

Query: 210 LAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVA 248
           ++AEG+  A++ + ++     +    ++LR L+    +A
Sbjct: 212 ISAEGDSKAAELIANSLATAGDG--LIELRKLEAAEDIA 248


>gi|30578410 source of immunodominant MHC-associated peptides [Homo
           sapiens]
          Length = 826

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 20  WILFSLSFLLVIITFPISIWMCLKIIKEYERAVV 53
           W+ F     +++ TFP  +W C+K I + ER  V
Sbjct: 411 WVSFFFDLHILVCTFPAGLWFCIKNIND-ERVFV 443


>gi|156616275 DNA-directed DNA polymerase delta 1 [Homo sapiens]
          Length = 1107

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 18/78 (23%), Positives = 37/78 (47%)

Query: 155 REEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARAKVLAAEG 214
           +E++ HSI T L +  +    R+A   +KD  +P++L   +     A   AR   +    
Sbjct: 486 KEDVQHSIITDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSY 545

Query: 215 EMNASKSLKSASMVLAES 232
            ++  + +K  S +L ++
Sbjct: 546 LLSRGQQVKVVSQLLRQA 563


>gi|84872173 zinc finger protein 131 [Homo sapiens]
          Length = 589

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 145 TQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATRE 204
           T T   ++ G EE A+ +    +    L  I+   V  K+   P++   +   EA+  + 
Sbjct: 89  TYTAKLMIQGEEE-ANDVWKAAEFLQMLEAIKALEVRNKENSAPLEENTTGKNEAKKRKI 147

Query: 205 ARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVATEKNS 253
           A    +  E   +A        + +AE  I ++   ++TL  VA+ K S
Sbjct: 148 AETSNVITESLPSAESEPVEIEVEIAEGTIEVEDEGIETLEEVASAKQS 196


>gi|222831577 zinc finger protein 286B [Homo sapiens]
          Length = 522

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 181 EIKDVRIPVQLQRSMAAEAEATREARA-KVLAAEGEMNASKSLKSASMVLAESPIALQLR 239
           E+  +R+  + Q + AA A  +R  R   V        A + +KS   + A   ++L L 
Sbjct: 31  EVAALRLTARSQAAAAAAAPGSRSLRGVHVPPPLHPAPAREEIKSTCSLKACFSLSLTLT 90

Query: 240 YLQTLSTVATEKNSTIVFPLPMNI 263
           Y +T   ++TE    + F  P ++
Sbjct: 91  YYRTAFLLSTENEGNLHFQCPSDV 114


>gi|47933339 RNA binding motif protein 15 [Homo sapiens]
          Length = 977

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 186 RIPVQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSAS 226
           R PV+ +RS   E   +R  R+K L   G  N S S K+ S
Sbjct: 50  RSPVKAKRSRGGEDSTSRGERSKKLGGSGGSNGSSSGKTDS 90


>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
          Length = 1498

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 190  QLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAES--PIALQLRYLQTLSTV 247
            +LQ  +A  ++   E+R KVL  E E+  S+  +     L ES   +AL+L + +   T 
Sbjct: 1064 ELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTG 1123

Query: 248  ATEKNSTI 255
              + N+ +
Sbjct: 1124 LGQSNAAL 1131


>gi|221136814 coiled-coil domain containing 154 [Homo sapiens]
          Length = 667

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 145 TQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQ-RSMAAEAEATR 203
           T  L Q   GRE    ++Q   +D++    + VAR++ +  ++  ++  R +  EA+   
Sbjct: 189 TDLLQQEEQGREVACGALQKNQEDSSRRVDLEVARMQAQVTKLGEEVSLRFLKREAKLCG 248

Query: 204 EARAKVLAAEGEMNASKS 221
             +   LA E  M AS+S
Sbjct: 249 FLQKSFLALEKRMKASES 266


>gi|151301228 formin binding protein 3 [Homo sapiens]
          Length = 930

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 182 IKDVRIPVQLQRSMAAE-AEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRY 240
           +    IP  +    AAE A A   A A   AA    NA+ S  +++ V    P+  +   
Sbjct: 232 VPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSGTVPVVPEPEV 291

Query: 241 LQTLSTVATEKNSTIV 256
              ++TV   +N+  +
Sbjct: 292 TSIVATVVDNENTVTI 307


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,343,224
Number of Sequences: 37866
Number of extensions: 283066
Number of successful extensions: 769
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 22
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.