Guide to the Human Genome
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Name: CCDC154 Sequence: fasta or formatted (667aa) NCBI GI: 221136814
Description:

coiled-coil domain containing 154

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         67           2
 C cysteine            1.2          8           1
 D aspartate           2.5         17           1
 E glutamate          12.0         80           2
 F phenylalanine       1.5         10           1
 G glycine             5.7         38           2
 H histidine           1.5         10           1
 I isoleucine          1.2          8           1
 K lysine              5.8         39           1
 L leucine            15.6        104           3
 M methionine          1.8         12           1
 N asparagine          1.9         13           1
 P proline             3.1         21           1
 Q glutamine           8.8         59           2
 R arginine            9.3         62           3
 S serine              7.2         48           2
 T threonine           2.8         19           1
 V valine              5.5         37           2
 W tryptophan          1.8         12           1
 Y tyrosine            0.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 154 
CROCC                 0.048   ciliary rootlet coiled-coil 
PLEC1                 0.048   plectin 1 isoform 11 
PLEC1                 0.048   plectin 1 isoform 10 
PLEC1                 0.048   plectin 1 isoform 8 
PLEC1                 0.048   plectin 1 isoform 7 
PLEC1                 0.048   plectin 1 isoform 6 
PLEC1                 0.048   plectin 1 isoform 3 
PLEC1                 0.048   plectin 1 isoform 2 
PLEC1                 0.048   plectin 1 isoform 1 
CCDC88B               0.047   coiled-coil domain containing 88 
MYH11                 0.044   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.044   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.044   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.044   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH14                 0.041   myosin, heavy chain 14 isoform 1 
MYH14                 0.041   myosin, heavy chain 14 isoform 2 
MYH14                 0.041   myosin, heavy chain 14 isoform 3 
MYH10                 0.041   myosin, heavy polypeptide 10, non-muscle 
MYH7                  0.040   myosin, heavy chain 7, cardiac muscle, beta 
CLIP1                 0.040   restin isoform b 
CLIP1                 0.040   restin isoform a 
GOLGA3                0.040   Golgi autoantigen, golgin subfamily a, 3 
CEP164                0.037   centrosomal protein 164kDa 
NUMA1                 0.037   nuclear mitotic apparatus protein 1 
MYH6                  0.035   myosin heavy chain 6 
RRBP1                 0.035   ribosome binding protein 1 
RRBP1                 0.035   ribosome binding protein 1 
CEP250                0.035   centrosomal protein 2 
FYCO1                 0.035   FYVE and coiled-coil domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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