Guide to the Human Genome
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Name: GNAT1 Sequence: fasta or formatted (350aa) NCBI GI: 22027520
Description:

rod-type transducin alpha subunit

Referenced in:

G Proteins
Photoreceptors and Related Functions

Other entries for this name:
alt mRNA [350aa] rod-type transducin alpha subunit
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         23           2
 C cysteine            2.3          8           1
 D aspartate           7.4         26           2
 E glutamate           8.0         28           2
 F phenylalanine       5.1         18           2
 G glycine             5.4         19           2
 H histidine           2.6          9           1
 I isoleucine          8.0         28           3
 K lysine              7.4         26           2
 L leucine             8.6         30           4
 M methionine          3.4         12           1
 N asparagine          3.7         13           1
 P proline             1.4          5           1
 Q glutamine           3.7         13           1
 R arginine            4.9         17           2
 S serine              6.0         21           1
 T threonine           5.7         20           2
 V valine              5.4         19           1
 W tryptophan          0.6          2           1
 Y tyrosine            3.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   rod-type transducin alpha subunit 
GNAT1                 1.000   rod-type transducin alpha subunit 
GNAT2                 0.836   guanine nucleotide binding protein, alpha transducin...
GNAT3                 0.802   guanine nucleotide binding protein, alpha transduci...
GNAI1                 0.703   guanine nucleotide binding protein (G protein), alph...
GNAI3                 0.684   guanine nucleotide binding protein (G protein), alpha...
GNAI2                 0.681   guanine nucleotide binding protein (G protein), alpha...
GNAO1                 0.609   guanine nucleotide binding protein, alpha activating...
GNAO1                 0.594   guanine nucleotide binding protein, alpha activatin...
GNAZ                  0.544   guanine nucleotide binding protein, alpha z polypepti...
GNA14                 0.451   G alpha 14 
GNAQ                  0.446   guanine nucleotide binding protein (G protein), q po...
GNA11                 0.445   guanine nucleotide binding protein (G protein), alp...
GNA15                 0.372   guanine nucleotide binding protein (G protein), alp...
GNAL                  0.355   guanine nucleotide binding protein (G protein), alpha...
GNAL                  0.355   guanine nucleotide binding protein (G protein), alp...
GNA12                 0.353   guanine nucleotide binding protein (G protein) alpha...
GNAL                  0.349   guanine nucleotide binding protein (G protein), alph...
GNAS                  0.349   GNAS complex locus isoform g 
GNA13                 0.346   guanine nucleotide binding protein (G protein), alph...
GNAS                  0.341   GNAS complex locus GNASS 
GNAS                  0.335   GNAS complex locus GNASL 
GNAS                  0.334   GNAS complex locus isoform f 
GNAS                  0.331   GNAS complex locus XLas 
ARF6                  0.031   ADP-ribosylation factor 6 
TRIM23                0.025   ADP-ribosylation factor domain protein 1 isoform gam...
TRIM23                0.025   ADP-ribosylation factor domain protein 1 isoform bet...
TRIM23                0.025   ADP-ribosylation factor domain protein 1 isoform alph...
ARF5                  0.024   ADP-ribosylation factor 5 
ARF1                  0.022   ADP-ribosylation factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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