Guide to the Human Genome
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Name: TMEM106C Sequence: fasta or formatted (231aa) NCBI GI: 219802857
Description:

transmembrane protein 106C isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {250aa} transmembrane protein 106C isoform a
alt mRNA {231aa} transmembrane protein 106C isoform b
alt prot {250aa} transmembrane protein 106C isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         12           3
 C cysteine            2.6          6           1
 D aspartate           4.3         10           3
 E glutamate           4.8         11           2
 F phenylalanine       5.2         12           2
 G glycine             5.6         13           2
 H histidine           2.6          6           2
 I isoleucine          6.9         16           1
 K lysine              3.5          8           1
 L leucine             9.5         22           2
 M methionine          2.6          6           1
 N asparagine          3.5          8           1
 P proline             3.5          8           1
 Q glutamine           5.6         13           1
 R arginine            4.8         11           2
 S serine              8.7         20           2
 T threonine           7.8         18           1
 V valine              9.5         22           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 106C isoform b 
TMEM106C              1.000   transmembrane protein 106C isoform b 
TMEM106C              0.975   transmembrane protein 106C isoform a 
TMEM106C              0.975   transmembrane protein 106C isoform a 
TMEM106B              0.403   transmembrane protein 106B 
TMEM106B              0.403   transmembrane protein 106B 
TMEM106A              0.247   transmembrane protein 106A 
ND2                   0.018   NADH dehydrogenase subunit 2 
ND2                   0.016   NADH dehydrogenase subunit 2 
CACNB4                0.012   calcium channel, voltage-dependent, beta 4 subunit ...
CACNB4                0.012   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.012   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.012   calcium channel, voltage-dependent, beta 4 subunit i...
RPE65                 0.012   retinal pigment epithelium-specific protein 65kDa [Ho...
INTS1                 0.012   integrator complex subunit 1 
FAM179A               0.009   hypothetical protein LOC165186 
CDH7                  0.007   cadherin 7, type 2 preproprotein 
CDH7                  0.007   cadherin 7, type 2 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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