Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TMEM106A Sequence: fasta or formatted (262aa) NCBI GI: 21450796
Description:

transmembrane protein 106A

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         13           1
 C cysteine            3.4          9           1
 D aspartate           2.7          7           1
 E glutamate           4.6         12           1
 F phenylalanine       4.6         12           2
 G glycine             5.3         14           1
 H histidine           3.4          9           2
 I isoleucine          6.5         17           1
 K lysine              5.0         13           1
 L leucine            11.5         30           3
 M methionine          1.1          3           1
 N asparagine          4.6         12           2
 P proline             5.3         14           2
 Q glutamine           5.0         13           1
 R arginine            1.9          5           1
 S serine             10.7         28           2
 T threonine           6.5         17           1
 V valine              8.4         22           2
 W tryptophan          0.8          2           1
 Y tyrosine            3.8         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 106A 
TMEM106B              0.338   transmembrane protein 106B 
TMEM106B              0.338   transmembrane protein 106B 
TMEM106C              0.223   transmembrane protein 106C isoform a 
TMEM106C              0.223   transmembrane protein 106C isoform a 
TMEM106C              0.211   transmembrane protein 106C isoform b 
TMEM106C              0.211   transmembrane protein 106C isoform b 
KIR2DS5               0.010   killer cell immunoglobulin-like receptor, two domai...
CHST15                0.008   B cell RAG associated protein 
FER1L5                0.008   fer-1-like 5 isoform 2 
MARCH8                0.006   cellular modulator of immune recognition isoform 7 [...
MARCH8                0.006   cellular modulator of immune recognition isoform 6 [...
MARCH8                0.006   cellular modulator of immune recognition isoform 8 [...
RNASE11               0.006   ribonuclease, RNase A family, 11 (non-active) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press