Guide to the Human Genome
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Name: TMEM106B Sequence: fasta or formatted (274aa) NCBI GI: 197116389
Description:

transmembrane protein 106B

Not currently referenced in the text

Other entries for this name:
alt mRNA {274aa} transmembrane protein 106B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9          8           1
 C cysteine            1.8          5           1
 D aspartate           4.4         12           1
 E glutamate           4.7         13           2
 F phenylalanine       3.3          9           2
 G glycine             5.8         16           1
 H histidine           1.8          5           1
 I isoleucine          6.6         18           2
 K lysine              3.6         10           1
 L leucine             8.0         22           3
 M methionine          2.9          8           2
 N asparagine          6.6         18           3
 P proline             3.6         10           1
 Q glutamine           6.6         18           2
 R arginine            5.1         14           2
 S serine              7.7         21           2
 T threonine           8.0         22           3
 V valine              9.9         27           1
 W tryptophan          0.0          0           0
 Y tyrosine            6.6         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 106B 
TMEM106B              1.000   transmembrane protein 106B 
TMEM106C              0.363   transmembrane protein 106C isoform a 
TMEM106C              0.363   transmembrane protein 106C isoform a 
TMEM106C              0.333   transmembrane protein 106C isoform b 
TMEM106C              0.333   transmembrane protein 106C isoform b 
TMEM106A              0.325   transmembrane protein 106A 
PTPRC                 0.019   protein tyrosine phosphatase, receptor type, C isofo...
ZNF512                0.013   zinc finger protein 512 
FN3KRP                0.011   fructosamine 3 kinase related protein 
EFEMP1                0.010   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.010   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.010   EGF-containing fibulin-like extracellular matrix prot...
NAP5                  0.008   Nck-associated protein 5 isoform 1 
LIMK2                 0.008   LIM domain kinase 2 isoform 1 
LIMK2                 0.008   LIM domain kinase 2 isoform 2b 
LIMK2                 0.008   LIM domain kinase 2 isoform 2a 
LOC100287699          0.008   PREDICTED: hypothetical protein XP_002342252 
PGR                   0.006   progesterone receptor 
SPINT2                0.006   serine protease inhibitor, Kunitz type, 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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