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Search of human proteins with 218505833
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|218505833 TRAF4 associated factor 1 isoform c [Homo sapiens]
(241 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|218505833 TRAF4 associated factor 1 isoform c [Homo sapiens] 479 e-136
gi|218505831 TRAF4 associated factor 1 isoform b [Homo sapiens] 455 e-128
gi|218505827 TRAF4 associated factor 1 isoform a [Homo sapiens] 455 e-128
gi|56790919 haspin [Homo sapiens] 42 4e-04
gi|33946313 ninein isoform 4 [Homo sapiens] 38 0.007
gi|33946321 ninein isoform 5 [Homo sapiens] 38 0.007
gi|148536871 ninein isoform 1 [Homo sapiens] 38 0.007
gi|148536869 ninein isoform 2 [Homo sapiens] 38 0.007
gi|110349797 homer 2 isoform 4 [Homo sapiens] 38 0.009
gi|110349794 homer 2 isoform 3 [Homo sapiens] 37 0.012
gi|116256481 TNFAIP3 interacting protein 1 [Homo sapiens] 37 0.015
gi|148612801 KIAA1009 protein [Homo sapiens] 36 0.026
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 35 0.045
gi|157671949 rearranged L-myc fusion [Homo sapiens] 35 0.045
gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo sap... 35 0.058
gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sap... 35 0.058
gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sap... 35 0.058
gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo sap... 35 0.058
gi|82880654 coiled-coil domain containing 46 isoform b [Homo sap... 35 0.058
gi|58535453 CDK5 regulatory subunit associated protein 2 isoform... 34 0.099
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform... 34 0.099
gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens] 34 0.099
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 34 0.13
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 34 0.13
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 34 0.13
gi|50980301 myosin phosphatase-Rho interacting protein isoform 2... 34 0.13
gi|50980307 myosin phosphatase-Rho interacting protein isoform 1... 34 0.13
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 33 0.17
gi|66773344 hypothetical protein LOC140710 [Homo sapiens] 33 0.17
gi|21735548 centrosomal protein 2 [Homo sapiens] 33 0.22
>gi|218505833 TRAF4 associated factor 1 isoform c [Homo sapiens]
Length = 241
Score = 479 bits (1233), Expect = e-136
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK 60
MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK
Sbjct: 1 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK 60
Query: 61 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV 120
DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV
Sbjct: 61 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV 120
Query: 121 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ 180
DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
Sbjct: 121 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ 180
Query: 181 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPVAVRNFARGAEA 240
LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPVAVRNFARGAEA
Sbjct: 181 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPVAVRNFARGAEA 240
Query: 241 F 241
F
Sbjct: 241 F 241
>gi|218505831 TRAF4 associated factor 1 isoform b [Homo sapiens]
Length = 286
Score = 455 bits (1170), Expect = e-128
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK 60
MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK
Sbjct: 1 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK 60
Query: 61 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV 120
DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV
Sbjct: 61 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV 120
Query: 121 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ 180
DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
Sbjct: 121 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ 180
Query: 181 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDP 228
LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDP
Sbjct: 181 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDP 228
>gi|218505827 TRAF4 associated factor 1 isoform a [Homo sapiens]
Length = 316
Score = 455 bits (1170), Expect = e-128
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK 60
MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK
Sbjct: 1 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK 60
Query: 61 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV 120
DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV
Sbjct: 61 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV 120
Query: 121 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ 180
DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
Sbjct: 121 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ 180
Query: 181 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDP 228
LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDP
Sbjct: 181 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDP 228
>gi|56790919 haspin [Homo sapiens]
Length = 798
Score = 42.4 bits (98), Expect = 4e-04
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 20/188 (10%)
Query: 18 LSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEKD-----CGQDRRAPGVQ 72
L++ C P P + +A L + V +G L E D C Q+ G +
Sbjct: 172 LASPCPGSPTPRD--SVISIGTSACLVAASAVPSGLHLPEVSLDRASLPCSQEEATGGAK 229
Query: 73 PCRLV--TMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEVDVSKQLHSGG 130
R+V T S+ ++ L ++ G P D++ RA K++ K K + G
Sbjct: 230 DTRMVHQTRASLRSVLFGL-----MNSGTPEDSEFRADGKNMRESCCKR----KLVVGNG 280
Query: 131 PENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELK--DKNQLLEAVNKQ 188
PE T RR GQ + + VR+ ++ S K + D+ + + K
Sbjct: 281 PEGPGLSSTGKRRATGQDSCQERGLQEAVRREHQEASVPKGRIVPRGIDRLERTRSSRKS 340
Query: 189 LHQKLTET 196
HQ+ TET
Sbjct: 341 KHQEATET 348
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 38.1 bits (87), Expect = 0.007
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 132 ENDVTKITKLRRENGQMKA----TDTATRRN--VRKGYKPLSKQKSEEELKDKNQLLEAV 185
E D KL NG + T+T + N V+K + L KQ SE LK KNQ L+
Sbjct: 1541 EEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISE--LKIKNQQLDLE 1598
Query: 186 NKQLHQKLTETQGELKDLTQKV 207
N +L QK ++ Q +L++L Q++
Sbjct: 1599 NTELSQKNSQNQEKLQELNQRL 1620
Score = 30.8 bits (68), Expect = 1.1
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 110 KSLLPVRSKEVDVSKQLHSGGPENDVTKITK-LRRENGQMKATDTATRRN-VRKGYKPLS 167
KS L V +E + KQ +V + K L+ G+ A + AT + + K LS
Sbjct: 1792 KSDLRVTQQEKEALKQ--------EVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLS 1843
Query: 168 KQKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLE 211
K + + ++ QLL N++L + T+ EL +KV LE
Sbjct: 1844 WDKLDHLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLE 1887
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 38.1 bits (87), Expect = 0.007
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 132 ENDVTKITKLRRENGQMKA----TDTATRRN--VRKGYKPLSKQKSEEELKDKNQLLEAV 185
E D KL NG + T+T + N V+K + L KQ SE LK KNQ L+
Sbjct: 1535 EEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISE--LKIKNQQLDLE 1592
Query: 186 NKQLHQKLTETQGELKDLTQKV 207
N +L QK ++ Q +L++L Q++
Sbjct: 1593 NTELSQKNSQNQEKLQELNQRL 1614
Score = 30.8 bits (68), Expect = 1.1
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 110 KSLLPVRSKEVDVSKQLHSGGPENDVTKITK-LRRENGQMKATDTATRRN-VRKGYKPLS 167
KS L V +E + KQ +V + K L+ G+ A + AT + + K LS
Sbjct: 1786 KSDLRVTQQEKEALKQ--------EVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLS 1837
Query: 168 KQKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLE 211
K + + ++ QLL N++L + T+ EL +KV LE
Sbjct: 1838 WDKLDHLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLE 1881
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 38.1 bits (87), Expect = 0.007
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 132 ENDVTKITKLRRENGQMKA----TDTATRRN--VRKGYKPLSKQKSEEELKDKNQLLEAV 185
E D KL NG + T+T + N V+K + L KQ SE LK KNQ L+
Sbjct: 1535 EEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISE--LKIKNQQLDLE 1592
Query: 186 NKQLHQKLTETQGELKDLTQKV 207
N +L QK ++ Q +L++L Q++
Sbjct: 1593 NTELSQKNSQNQEKLQELNQRL 1614
Score = 30.8 bits (68), Expect = 1.1
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 110 KSLLPVRSKEVDVSKQLHSGGPENDVTKITK-LRRENGQMKATDTATRRN-VRKGYKPLS 167
KS L V +E + KQ +V + K L+ G+ A + AT + + K LS
Sbjct: 1786 KSDLRVTQQEKEALKQ--------EVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLS 1837
Query: 168 KQKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLE 211
K + + ++ QLL N++L + T+ EL +KV LE
Sbjct: 1838 WDKLDHLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLE 1881
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 38.1 bits (87), Expect = 0.007
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 132 ENDVTKITKLRRENGQMKA----TDTATRRN--VRKGYKPLSKQKSEEELKDKNQLLEAV 185
E D KL NG + T+T + N V+K + L KQ SE LK KNQ L+
Sbjct: 1535 EEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISE--LKIKNQQLDLE 1592
Query: 186 NKQLHQKLTETQGELKDLTQKV 207
N +L QK ++ Q +L++L Q++
Sbjct: 1593 NTELSQKNSQNQEKLQELNQRL 1614
Score = 30.8 bits (68), Expect = 1.1
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 110 KSLLPVRSKEVDVSKQLHSGGPENDVTKITK-LRRENGQMKATDTATRRN-VRKGYKPLS 167
KS L V +E + KQ +V + K L+ G+ A + AT + + K LS
Sbjct: 1786 KSDLRVTQQEKEALKQ--------EVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLS 1837
Query: 168 KQKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLE 211
K + + ++ QLL N++L + T+ EL +KV LE
Sbjct: 1838 WDKLDHLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLE 1881
>gi|110349797 homer 2 isoform 4 [Homo sapiens]
Length = 299
Score = 37.7 bits (86), Expect = 0.009
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 106 RATSKSLLPVRSKEVDVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKP 165
R T S D K H+G P N T L+ EN ++K T + NV
Sbjct: 133 RETPSSTQASSVNGTDDEKASHAG-PAN-----THLKSENDKLKIALTQSAANV------ 180
Query: 166 LSKQKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILE 222
K + E K+KN L+ ++L +L E + ELKDL ++ E++ + C + E
Sbjct: 181 --KNEINRE-KEKNTQLKRRIEELEAELREKETELKDLRKQSEIIPQLMSECEYVSE 234
>gi|110349794 homer 2 isoform 3 [Homo sapiens]
Length = 288
Score = 37.4 bits (85), Expect = 0.012
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 121 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ 180
D K H+G P N T L+ EN ++K T + NV K + E K+KN
Sbjct: 137 DDEKASHAG-PAN-----THLKSENDKLKIALTQSAANV--------KNEINRE-KEKNT 181
Query: 181 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILE 222
L+ ++L +L E + ELKDL ++ E++ + C + E
Sbjct: 182 QLKRRIEELEAELREKETELKDLRKQSEIIPQLMSECEYVSE 223
>gi|116256481 TNFAIP3 interacting protein 1 [Homo sapiens]
Length = 636
Score = 37.0 bits (84), Expect = 0.015
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 84 KTVYSLQPPSALSGGQPADTQTRATSKSLLPV---RSKEVDVSKQLHS---GGPENDVTK 137
K V Q S +G P A K + + RS+ ++V+KQ + K
Sbjct: 275 KAVAGQQQASVTAGKVPEVVALGAAEKKVKMLEQQRSELLEVNKQWDQHFRSMKQQYEQK 334
Query: 138 ITKLRRENG--QMKATDT-ATRRNVRKGYKP---LSKQKSEEELKDKNQLLEAVNKQLHQ 191
IT+LR++ Q + TD A R ++ + L+K K E E DK QL A K+L Q
Sbjct: 335 ITELRQKLADLQKQVTDLEAEREQKQRDFDRKLLLAKSKIEMEETDKEQLT-AEAKELRQ 393
Query: 192 KLTETQGELKDLTQKVELLEK 212
K+ Q +L LT++ E EK
Sbjct: 394 KVKYLQDQLSPLTRQREYQEK 414
>gi|148612801 KIAA1009 protein [Homo sapiens]
Length = 1403
Score = 36.2 bits (82), Expect = 0.026
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 132 ENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELK--DKN----QLLEAV 185
++D +I L +E +K T RN+ L Q +E ++K DK+ Q +E
Sbjct: 1018 QHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQ 1077
Query: 186 NKQLHQK---------LTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPVAVR 232
+Q H K L + E++DL++ VE L+K R L+ SKG + ++ +
Sbjct: 1078 VEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNSKGREEMSAK 1133
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo
sapiens]
Length = 2603
Score = 35.4 bits (80), Expect = 0.045
Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 67 RAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEVDVSKQL 126
RAP V P + + M VV +PP+ ++ P + + KS + + DV +
Sbjct: 743 RAPRV-PVQALPM--VVPPQEPDKPPANVATTLPIRNKAASKQKSSSHLPANSQDVQGYI 799
Query: 127 HSGGPENDVT----KITKLRR-------ENGQMKATDTATRRNVRKGYKPLSKQKSEEEL 175
+ PE+ V K+T+L + +N Q+++ + A + K + EE++
Sbjct: 800 TNQSPESIVEEAQGKLTELEQRIKEAIEKNAQLQSLELAHADQLTKEKIEELNKTREEQI 859
Query: 176 KDKNQLLEAVNKQLHQKLTETQGELKD-----LTQKVELLEKFRDNC 217
+ K ++LE + K + +TQ +LK Q+++L ++ + +C
Sbjct: 860 QKKQKILEELQKVERELQLKTQQQLKKQYLEVKAQRIQLQQQQQQSC 906
>gi|157671949 rearranged L-myc fusion [Homo sapiens]
Length = 1914
Score = 35.4 bits (80), Expect = 0.045
Identities = 40/161 (24%), Positives = 60/161 (37%), Gaps = 15/161 (9%)
Query: 51 AGNLLNESEKDCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSK 110
A LL C + ++ C +V K S+ P+ G T TS
Sbjct: 1663 ADTLLYRGTLKCNHSSKTTSLEQCNIVQPPPPCKIENSIPNPNGTESG------TYFTSF 1716
Query: 111 SLLPVRSKEVDVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQK 170
L R KE + + HS G EN V T + +EN + + R K YKP+ +
Sbjct: 1717 QLPLPRIKESETRQ--HSSGQENTVKNPTHVPKENFR---KHSQPRSFDLKTYKPMGFES 1771
Query: 171 S----EEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKV 207
S +E ++K + H L+ + DLT V
Sbjct: 1772 SFLKFIQESEEKEDDFDDWEPSEHLTLSNSSQSSNDLTGNV 1812
>gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo
sapiens]
Length = 436
Score = 35.0 bits (79), Expect = 0.058
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 118 KEVDVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKD 177
K+ + KQ++ END KL+ E + +A + A +N + Y E+EL+
Sbjct: 257 KQESLEKQINDLKSENDALN-EKLKSEEQKRRAREKANLKNPQIMYL-------EQELES 308
Query: 178 KNQLLEAVNKQLHQ---KLTETQGELKDLTQKVELLEKFR 214
+LE N++LHQ KL + + + + T V+ L++F+
Sbjct: 309 LKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQ 348
>gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sapiens]
Length = 1270
Score = 35.0 bits (79), Expect = 0.058
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 118 KEVDVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKD 177
K+ + KQ++ END KL+ E + +A + A +N + Y E+EL+
Sbjct: 1091 KQESLEKQINDLKSENDALN-EKLKSEEQKRRAREKANLKNPQIMYL-------EQELES 1142
Query: 178 KNQLLEAVNKQLHQ---KLTETQGELKDLTQKVELLEKFR 214
+LE N++LHQ KL + + + + T V+ L++F+
Sbjct: 1143 LKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQ 1182
>gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sapiens]
Length = 1216
Score = 35.0 bits (79), Expect = 0.058
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 118 KEVDVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKD 177
K+ + KQ++ END KL+ E + +A + A +N + Y E+EL+
Sbjct: 1037 KQESLEKQINDLKSENDALN-EKLKSEEQKRRAREKANLKNPQIMYL-------EQELES 1088
Query: 178 KNQLLEAVNKQLHQ---KLTETQGELKDLTQKVELLEKFR 214
+LE N++LHQ KL + + + + T V+ L++F+
Sbjct: 1089 LKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQ 1128
>gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo
sapiens]
Length = 517
Score = 35.0 bits (79), Expect = 0.058
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 118 KEVDVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKD 177
K+ + KQ++ END KL+ E + +A + A +N + Y E+EL+
Sbjct: 338 KQESLEKQINDLKSENDALN-EKLKSEEQKRRAREKANLKNPQIMYL-------EQELES 389
Query: 178 KNQLLEAVNKQLHQ---KLTETQGELKDLTQKVELLEKFR 214
+LE N++LHQ KL + + + + T V+ L++F+
Sbjct: 390 LKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQ 429
>gi|82880654 coiled-coil domain containing 46 isoform b [Homo
sapiens]
Length = 211
Score = 35.0 bits (79), Expect = 0.058
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 127 HSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDK--NQLLEA 184
H EN ++ ++R ENG + T+ A KPL + + LK+K N L+
Sbjct: 9 HPSAKENQALRLIEMREENGNVPKTEQA------GSLKPL-RDTGKSNLKEKKANSKLKQ 61
Query: 185 VNKQLHQKLTETQGELKDLTQKVELLEK 212
+ K+ QKL ++ + +L + L++
Sbjct: 62 IEKEYTQKLAKSSQIIAELQTTISSLKE 89
Score = 30.8 bits (68), Expect = 1.1
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 22/107 (20%)
Query: 136 TKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKS----------EEELKDKNQLLEAV 185
T I+ L+ EN Q + ++VR+ ++ KQ ++EL++++ +
Sbjct: 82 TTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCA 141
Query: 186 NKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPVAVR 232
K+L K E+Q ++ + Q+ E + KGL P ++R
Sbjct: 142 EKKLQHKELESQEQITYIRQEYE------------TKLKGLMPASLR 176
>gi|58535453 CDK5 regulatory subunit associated protein 2 isoform b
[Homo sapiens]
Length = 1814
Score = 34.3 bits (77), Expect = 0.099
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 102 DTQTRATSKSLLPVRSKEVDVSKQLHSGGPENDVTKITK----LRRENGQM--------- 148
D +T + K L + +++K + + KIT+ L++E ++
Sbjct: 368 DYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEKDLEEAHR 427
Query: 149 -KATDTATRRNVRKGYKPLSKQKSEEELKDKNQ---LLEAVNKQLHQKLTETQGELKDLT 204
K+ T R++R + L + +E E +N+ LL NK+LH + + +
Sbjct: 428 EKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIKHLTESTN 487
Query: 205 QKVELLEKFRDNCLAILE 222
QK LL+KF + L +++
Sbjct: 488 QKDVLLQKFNEKDLEVIQ 505
>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
[Homo sapiens]
Length = 1893
Score = 34.3 bits (77), Expect = 0.099
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 102 DTQTRATSKSLLPVRSKEVDVSKQLHSGGPENDVTKITK----LRRENGQM--------- 148
D +T + K L + +++K + + KIT+ L++E ++
Sbjct: 368 DYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEKDLEEAHR 427
Query: 149 -KATDTATRRNVRKGYKPLSKQKSEEELKDKNQ---LLEAVNKQLHQKLTETQGELKDLT 204
K+ T R++R + L + +E E +N+ LL NK+LH + + +
Sbjct: 428 EKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIKHLTESTN 487
Query: 205 QKVELLEKFRDNCLAILE 222
QK LL+KF + L +++
Sbjct: 488 QKDVLLQKFNEKDLEVIQ 505
>gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens]
Length = 269
Score = 34.3 bits (77), Expect = 0.099
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 26/163 (15%)
Query: 46 GTTVAAGNLLNESEKDCGQDRRAPG-VQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQ 104
G AA LL E D G D APG + P ++ V ++ + P+ + +P +
Sbjct: 110 GPGPAAPRLLKR-EPDWG-DGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSS 167
Query: 105 TRATSKSLLPVRSKEVDVSKQLHSGGPENDVTKITKLRRENG--QMKATDTATRRNVRKG 162
R T P ++E K+ GP+ + + R N K+ D A RRN
Sbjct: 168 PRQTPA---PGPAREKSAGKR----GPDRGSPEYRQRRERNNIAVRKSRDKAKRRN---- 216
Query: 163 YKPLSKQKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQ 205
+E++ K L A N++LHQ++ + +L L Q
Sbjct: 217 ----------QEMQQKLVELSAENEKLHQRVEQLTRDLAGLRQ 249
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 33.9 bits (76), Expect = 0.13
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 116 RSKEVDVSKQLHSGGPENDVT--KITKLRRENGQMKATDTATRRNVRK----GYKPLSKQ 169
R+ E+ + Q G N++T ++ KL EN + T R V K L +
Sbjct: 438 RTSELSEAPQKSLGHEVNELTSSRLLKLEMENQSLTKTVEELRTTVDSVEGNASKILKME 497
Query: 170 KSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLEK 212
K + L K ++LE Q Q L Q KDL ++ LEK
Sbjct: 498 KENQRLSKKVEILENEIVQEKQSLQNCQNLSKDLMKEKAQLEK 540
Score = 29.6 bits (65), Expect = 2.5
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 113 LPVRSKEVDVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVR------------ 160
L V + +D+ Q EN KI +L E ++ + ++N+
Sbjct: 754 LEVSYQGLDIENQRLQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQL 813
Query: 161 -KGYKPLSKQKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLT 204
K K L ++ S+ E KDK QL E NK+L Q Q E+KD T
Sbjct: 814 EKENKSLEQETSQLE-KDKKQL-EKENKRLRQ-----QAEIKDTT 851
Score = 28.5 bits (62), Expect = 5.5
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 132 ENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQLLEAVNKQLHQ 191
EN +I L +EN + T ++ R+ S+ +E +KD +E NK LH+
Sbjct: 547 ENSERQIKILEQENEHLNQTVSSLRQR--------SQISAEARVKD----IEKENKILHE 594
Query: 192 KLTETQGELKDLTQKVELLEK 212
+ ET +L + + ++K
Sbjct: 595 SIKETSSKLSKIEFEKRQIKK 615
Score = 28.1 bits (61), Expect = 7.1
Identities = 17/80 (21%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 137 KITKLRRENGQMKATDTATRRNV---RKGYKPLSK-QKSEEELKDKNQLLEAVNKQLHQK 192
K+ +L+ EN ++++ ++ + + +K + + S + L +NQ L+ + ++K
Sbjct: 719 KMAQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKK 778
Query: 193 LTETQGELKDLTQKVELLEK 212
+ + + EL+DL + + L+K
Sbjct: 779 IQQLESELQDLEMENQTLQK 798
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 33.9 bits (76), Expect = 0.13
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 116 RSKEVDVSKQLHSGGPENDVT--KITKLRRENGQMKATDTATRRNVRK----GYKPLSKQ 169
R+ E+ + Q G N++T ++ KL EN + T R V K L +
Sbjct: 438 RTSELSEAPQKSLGHEVNELTSSRLLKLEMENQSLTKTVEELRTTVDSVEGNASKILKME 497
Query: 170 KSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLEK 212
K + L K ++LE Q Q L Q KDL ++ LEK
Sbjct: 498 KENQRLSKKVEILENEIVQEKQSLQNCQNLSKDLMKEKAQLEK 540
Score = 29.6 bits (65), Expect = 2.5
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 113 LPVRSKEVDVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVR------------ 160
L V + +D+ Q EN KI +L E ++ + ++N+
Sbjct: 754 LEVSYQGLDIENQRLQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQL 813
Query: 161 -KGYKPLSKQKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLT 204
K K L ++ S+ E KDK QL E NK+L Q Q E+KD T
Sbjct: 814 EKENKSLEQETSQLE-KDKKQL-EKENKRLRQ-----QAEIKDTT 851
Score = 28.5 bits (62), Expect = 5.5
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 132 ENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQLLEAVNKQLHQ 191
EN +I L +EN + T ++ R+ S+ +E +KD +E NK LH+
Sbjct: 547 ENSERQIKILEQENEHLNQTVSSLRQR--------SQISAEARVKD----IEKENKILHE 594
Query: 192 KLTETQGELKDLTQKVELLEK 212
+ ET +L + + ++K
Sbjct: 595 SIKETSSKLSKIEFEKRQIKK 615
Score = 28.1 bits (61), Expect = 7.1
Identities = 17/80 (21%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 137 KITKLRRENGQMKATDTATRRNV---RKGYKPLSK-QKSEEELKDKNQLLEAVNKQLHQK 192
K+ +L+ EN ++++ ++ + + +K + + S + L +NQ L+ + ++K
Sbjct: 719 KMAQLQLENKELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIENQRLQKTLENSNKK 778
Query: 193 LTETQGELKDLTQKVELLEK 212
+ + + EL+DL + + L+K
Sbjct: 779 IQQLESELQDLEMENQTLQK 798
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 33.9 bits (76), Expect = 0.13
Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 19/176 (10%)
Query: 47 TTVAAGNLLNESEKDCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTR 106
+ +A + NE + D + +R + + + K S + P + G+ + R
Sbjct: 497 SNASASSSSNEGDSDRDEKKR-------KQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKR 549
Query: 107 ATSKSLLPVRSKEVDVSKQLHSGGPENDVTK--------ITKLRRENGQMKATDTATRRN 158
S +L + + + K H G D++K ++K ++E KA D RR+
Sbjct: 550 PMSAYMLWLNASREKI-KSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA--RRD 606
Query: 159 VRKGYKPLSKQKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLEKFR 214
K K + E +DK++ + V ++ +K T ++G + + +L E F+
Sbjct: 607 YEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSR-QLSESFK 661
>gi|50980301 myosin phosphatase-Rho interacting protein isoform 2
[Homo sapiens]
Length = 1025
Score = 33.9 bits (76), Expect = 0.13
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 137 KITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEEL-KDKNQLLEAVNKQLHQKLTE 195
++ KLR E ++ A +TA + + K +++ E EL K + + +VN + +
Sbjct: 749 ELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQRSQISSVNSDVEALRRQ 808
Query: 196 TQGELKDLTQKVELL-EKFRDNCL 218
EL+ + +++E+L E++ CL
Sbjct: 809 YLEELQSVQRELEVLSEQYSQKCL 832
>gi|50980307 myosin phosphatase-Rho interacting protein isoform 1
[Homo sapiens]
Length = 1038
Score = 33.9 bits (76), Expect = 0.13
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 137 KITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEEL-KDKNQLLEAVNKQLHQKLTE 195
++ KLR E ++ A +TA + + K +++ E EL K + + +VN + +
Sbjct: 749 ELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQRSQISSVNSDVEALRRQ 808
Query: 196 TQGELKDLTQKVELL-EKFRDNCL 218
EL+ + +++E+L E++ CL
Sbjct: 809 YLEELQSVQRELEVLSEQYSQKCL 832
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 33.5 bits (75), Expect = 0.17
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 110 KSLLPVRSKEVDVSKQLHSGGPENDVTKITKL------RRENGQMKATDTATRRNVRKGY 163
+ L V+ + VDV K+ E + K+ KL R+E K T R +
Sbjct: 457 QELSRVKQEVVDVMKK----SSEEQIAKLQKLHEKELARKEQELTKKLQTREREFQEQMK 512
Query: 164 KPLSKQKSE------EELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVE 208
L K +SE E+ + ++ LE + Q LTE++ +L+DL Q+ E
Sbjct: 513 VALEKSQSEYLKISQEKEQQESLALEELELQKKAILTESENKLRDLQQEAE 563
Score = 28.5 bits (62), Expect = 5.5
Identities = 25/147 (17%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 98 GQPADTQTRATSKSLLPVRSKEVDVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRR 157
G+ D + + + +L + ++ + +L + E + ++ +E ++KA +
Sbjct: 1573 GEEKDNRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEE-ELKALEDRLES 1631
Query: 158 NVRKGYKPLSKQKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLEK---FR 214
L ++ ++ K QLL + ++ Q T+ L +L K++ E+
Sbjct: 1632 ESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEEQYKKGTESHLSELNTKLQEREREVHIL 1691
Query: 215 DNCLAILESKGLDPVAVRNFARGAEAF 241
+ L +ES + + V A+ A+
Sbjct: 1692 EEKLKSVESSQSETLIVPRSAKNVAAY 1718
Score = 28.1 bits (61), Expect = 7.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 170 KSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCL 218
K +E+ Q ++++ K+ + T+ LKD ++ELL K RD L
Sbjct: 724 KMDEQKNHHQQQVDSIIKEHEVSIQRTEKALKDQINQLELLLKERDKHL 772
Score = 27.7 bits (60), Expect = 9.3
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 12/126 (9%)
Query: 101 ADTQTRATSKSLLPVRSKEVDVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVR 160
AD ++ T K L ++ ++Q + E+ +T++ K EN + +
Sbjct: 1311 ADIESLVTEKEAL----QKEGGNQQQAASEKESCITQLKKELSENINAVTLMKEELKEKK 1366
Query: 161 KGYKPLSKQ--------KSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLEK 212
LSKQ ++ L +K + ++ KQ ++ E +++DL+ KV+ L K
Sbjct: 1367 VEISSLSKQLTDLNVQLQNSISLSEKEAAISSLRKQYDEEKCELLDQVQDLSFKVDTLSK 1426
Query: 213 FRDNCL 218
+ + L
Sbjct: 1427 EKISAL 1432
>gi|66773344 hypothetical protein LOC140710 [Homo sapiens]
Length = 1016
Score = 33.5 bits (75), Expect = 0.17
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 106 RATSKSLLPVRSKEVDVSKQLHSGGPENDVT--KITKLRRENGQMKATDTATRRNVRKGY 163
+A K+L V+ D+ QLH E+ + K+TKL +EN MK R Y
Sbjct: 132 KADKKTL--VQEDSADLKCQLHFAKEESALMCKKLTKLAKENDSMK----EELLKYRSLY 185
Query: 164 KPLSKQKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLE 211
L S EEL D E K +H KL E + L L++++ LE
Sbjct: 186 GDLDSALSAEELADAPHSRETELK-VHLKLVEEEANL--LSRRIVELE 230
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 33.1 bits (74), Expect = 0.22
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 169 QKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLEK 212
Q EE +K+K L+ +Q H L E GEL+D ++ LE+
Sbjct: 1830 QGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEE 1873
Score = 28.5 bits (62), Expect = 5.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 169 QKSEEELKDKNQLLEAVNKQLHQKLTETQGELKDLTQKVELLEK 212
+K E L +KN LEA ++ + E Q +L+D+ ++ E ++K
Sbjct: 651 EKRREALWEKNTHLEAQLQKAEEAGAELQADLRDIQEEKEEIQK 694
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,326,277
Number of Sequences: 37866
Number of extensions: 394963
Number of successful extensions: 2433
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 2081
Number of HSP's gapped (non-prelim): 530
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.