Search of human proteins with 217416409

Search of human proteins with 217416409

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|217416409 transmembrane protein 17 [Homo sapiens]
         (198 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|217416409 transmembrane protein 17 [Homo sapiens]                  393   e-110
gi|109689697 transmembrane protein 80 isoform 1 [Homo sapiens]         55   4e-08
gi|109689699 transmembrane protein 80 isoform 2 [Homo sapiens]         52   3e-07
gi|31881792 leukotriene B4 receptor [Homo sapiens]                     30   1.0  
gi|221218998 leukotriene B4 receptor [Homo sapiens]                    30   1.0  
gi|66348165 transmembrane protein 209 [Homo sapiens]                   30   1.3  
gi|4557865 somatostatin receptor 5 [Homo sapiens]                      30   1.8  
gi|33695104 G protein-coupled receptor 65 [Homo sapiens]               29   3.0  
gi|4885121 chemokine (C-C motif) receptor 8 [Homo sapiens]             29   3.0  
gi|31563531 stromal antigen 2 isoform b [Homo sapiens]                 28   3.9  
gi|112789530 stromal antigen 2 isoform b [Homo sapiens]                28   3.9  
gi|112789528 stromal antigen 2 isoform a [Homo sapiens]                28   3.9  
gi|112789526 stromal antigen 2 isoform a [Homo sapiens]                28   3.9  
gi|92859670 solute carrier family 6 (neurotransmitter transporte...    28   3.9  
gi|156104886 CC chemokine receptor 10 [Homo sapiens]                   28   3.9  
gi|188528618 solute carrier family 6 (neurotransmitter transport...    28   5.1  
gi|4885333 free fatty acid receptor 2 [Homo sapiens]                   28   6.7  
gi|196123589 NADH dehydrogenase subunit 5 [Homo sapiens neandert...    27   8.7  
gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens]               27   8.7  
gi|240255505 potassium channel, subfamily T, member 1 [Homo sapi...    27   8.7  
gi|111378393 sodium channel, voltage-gated, type VII, alpha [Hom...    27   8.7  

>gi|217416409 transmembrane protein 17 [Homo sapiens]
          Length = 198

 Score =  393 bits (1009), Expect = e-110
 Identities = 198/198 (100%), Positives = 198/198 (100%)

Query: 1   MELPDPVRQRLGNFSRAVFSDSNRTGPESNEGPENEMVSSLALQMSLYFNTYYFPLWWVS 60
           MELPDPVRQRLGNFSRAVFSDSNRTGPESNEGPENEMVSSLALQMSLYFNTYYFPLWWVS
Sbjct: 1   MELPDPVRQRLGNFSRAVFSDSNRTGPESNEGPENEMVSSLALQMSLYFNTYYFPLWWVS 60

Query: 61  SIMMLHMKYSILPDYYKFIVITVIILITLIEAIRLYLGYVGNLQEKVPELAGFWLLSLLL 120
           SIMMLHMKYSILPDYYKFIVITVIILITLIEAIRLYLGYVGNLQEKVPELAGFWLLSLLL
Sbjct: 61  SIMMLHMKYSILPDYYKFIVITVIILITLIEAIRLYLGYVGNLQEKVPELAGFWLLSLLL 120

Query: 121 QLPLILFLLFNEGLTNLPLEKAIHIIFTLFLAFQVVAAFLTLRKMVNQLAVRFHLQDFDR 180
           QLPLILFLLFNEGLTNLPLEKAIHIIFTLFLAFQVVAAFLTLRKMVNQLAVRFHLQDFDR
Sbjct: 121 QLPLILFLLFNEGLTNLPLEKAIHIIFTLFLAFQVVAAFLTLRKMVNQLAVRFHLQDFDR 180

Query: 181 LSANRGDMRRMRSCIEEI 198
           LSANRGDMRRMRSCIEEI
Sbjct: 181 LSANRGDMRRMRSCIEEI 198


>gi|109689697 transmembrane protein 80 isoform 1 [Homo sapiens]
          Length = 160

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 23  NRTGPESNEGPENEMV-SSLALQMSLYFNTYYFPLWWVSSIMMLHMKYSIL--PDYYKFI 79
           +R GP    G  +  V SS+ LQM  Y +  Y+ L+++++++M+  K  +   P  Y  +
Sbjct: 15  DRDGPAGGAGRGSSTVLSSVPLQMLFYLSGTYYALYFLATLLMITYKSQVFSYPHRYLVL 74

Query: 80  VITVIILITLIEAIRLYLGYVGNLQEKVPELAGFWLLSLLLQLPLILFLLF 130
            + ++ L+ ++EA+RLYLG  GNL E    LA    L+    L    FLL+
Sbjct: 75  DLALLFLMGILEAVRLYLGTRGNLTEAERPLAASLALTAGTALLSAHFLLW 125


>gi|109689699 transmembrane protein 80 isoform 2 [Homo sapiens]
          Length = 168

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 11/119 (9%)

Query: 23  NRTGPESNEGP---------ENEMVSSLALQMSLYFNTYYFPLWWVSSIMMLHMKYSIL- 72
           +R GP    G           + ++SS+ LQM  Y +  Y+ L+++++++M+  K  +  
Sbjct: 15  DRDGPAGGAGKMAAPRRGRGSSTVLSSVPLQMLFYLSGTYYALYFLATLLMITYKSQVFS 74

Query: 73  -PDYYKFIVITVIILITLIEAIRLYLGYVGNLQEKVPELAGFWLLSLLLQLPLILFLLF 130
            P  Y  + + ++ L+ ++EA+RLYLG  GNL E    LA    L+    L    FLL+
Sbjct: 75  YPHRYLVLDLALLFLMGILEAVRLYLGTRGNLTEAERPLAASLALTAGTALLSAHFLLW 133


>gi|31881792 leukotriene B4 receptor [Homo sapiens]
          Length = 352

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 110 LAGFWLLSLLLQLPLILFLLFNEGLTNLPL---------EKAIHIIFTLFLAFQVVAAFL 160
           LAG W+LS LL  P++ +       TN+ L          +A H+IF     F  +  FL
Sbjct: 138 LAGIWVLSFLLATPVLAYRTVVPWKTNMSLCFPRYPSEGHRAFHLIFEAVTGF--LLPFL 195

Query: 161 TLRKMVNQLAVRFHLQDFDR 180
            +    + +  R   + F R
Sbjct: 196 AVVASYSDIGRRLQARRFRR 215


>gi|221218998 leukotriene B4 receptor [Homo sapiens]
          Length = 352

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 110 LAGFWLLSLLLQLPLILFLLFNEGLTNLPL---------EKAIHIIFTLFLAFQVVAAFL 160
           LAG W+LS LL  P++ +       TN+ L          +A H+IF     F  +  FL
Sbjct: 138 LAGIWVLSFLLATPVLAYRTVVPWKTNMSLCFPRYPSEGHRAFHLIFEAVTGF--LLPFL 195

Query: 161 TLRKMVNQLAVRFHLQDFDR 180
            +    + +  R   + F R
Sbjct: 196 AVVASYSDIGRRLQARRFRR 215


>gi|66348165 transmembrane protein 209 [Homo sapiens]
          Length = 561

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 45 MSLYFNTYYFPLWWVSSIMMLHMKYSILPDYYKFIVITV 83
          +S Y+N  Y+PLW++   +      + L D++++   TV
Sbjct: 52 ISSYYNVTYWPLWYIELALASLFSLNALFDFWRYFKYTV 90


>gi|4557865 somatostatin receptor 5 [Homo sapiens]
          Length = 364

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 111 AGFWLLSLLLQLPLILFLLFNEGLT-------NLPLEKAIHIIFTLFLAF 153
           A  W+LSL + LPL++F    EG T        + L  A+ II+T  L F
Sbjct: 161 AAAWVLSLCMSLPLLVFADVQEGGTCNASWPEPVGLWGAVFIIYTAVLGF 210


>gi|33695104 G protein-coupled receptor 65 [Homo sapiens]
          Length = 337

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 74  DYYKFIVITVIILITLIEAIRLYLGYVGNLQEKVPELAGFWLLSLLLQ-------LPLIL 126
           D+Y F ++ + ++I  I A  +    V  LQ K     G +L SL L        LPL +
Sbjct: 13  DHYLFPIVYIFVIIVSIPA-NIGSLCVSFLQAKKESELGIYLFSLSLSDLLYALTLPLWI 71

Query: 127 FLLFNEGLTNLPLEKAIHIIFTLFLAFQVVAAFLTLRKMVNQLAVRFHLQDF 178
              +N+              F +++ F    AFLT   +   LAV + L+ F
Sbjct: 72  DYTWNKDNWTFSPALCKGSAFLMYMNFYSSTAFLTCIAVDRYLAVVYPLKFF 123


>gi|4885121 chemokine (C-C motif) receptor 8 [Homo sapiens]
          Length = 355

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 35  NEMVSSLALQMSLYFNTYYFPLWWVSSIMMLHMKYSILPDYYKFIVITVIILITLIEAIR 94
           N  +S L    S  F TYY    WV   +M      ++  +Y     + +  ITL+   R
Sbjct: 76  NLALSDLLFVFSFPFQTYYLLDQWVFGTVMC----KVVSGFYYIGFYSSMFFITLMSVDR 131

Query: 95  -------LYLGYVGNLQEKVPELAGFWLLSLLLQLPLILF 127
                  +Y   V  ++         WL +++  +PL++F
Sbjct: 132 YLAVVHAVYALKVRTIRMGTTLCLAVWLTAIMATIPLLVF 171


>gi|31563531 stromal antigen 2 isoform b [Homo sapiens]
          Length = 1231

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 60  SSIMMLHMKYSILPDYYKFIVITVIILITLIEAIRLYLGYVGNLQEKVPE 109
           S I  LH + ++L  + K IV TV+ + T  +  + Y+ Y  +  + + E
Sbjct: 853 SKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKE 902


>gi|112789530 stromal antigen 2 isoform b [Homo sapiens]
          Length = 1231

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 60  SSIMMLHMKYSILPDYYKFIVITVIILITLIEAIRLYLGYVGNLQEKVPE 109
           S I  LH + ++L  + K IV TV+ + T  +  + Y+ Y  +  + + E
Sbjct: 853 SKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKE 902


>gi|112789528 stromal antigen 2 isoform a [Homo sapiens]
          Length = 1268

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 60  SSIMMLHMKYSILPDYYKFIVITVIILITLIEAIRLYLGYVGNLQEKVPE 109
           S I  LH + ++L  + K IV TV+ + T  +  + Y+ Y  +  + + E
Sbjct: 853 SKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKE 902


>gi|112789526 stromal antigen 2 isoform a [Homo sapiens]
          Length = 1268

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 60  SSIMMLHMKYSILPDYYKFIVITVIILITLIEAIRLYLGYVGNLQEKVPE 109
           S I  LH + ++L  + K IV TV+ + T  +  + Y+ Y  +  + + E
Sbjct: 853 SKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKE 902


>gi|92859670 solute carrier family 6 (neurotransmitter transporter,
           glycine), member 5 [Homo sapiens]
          Length = 797

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 121 QLPLILFLLFNEGLTNLPLEKAIHIIFTL-FLAFQVVAAFLTLRKMVNQLAVRF 173
           Q P I F+++ E LT LPL     IIF L  L   +   F T+  +V  ++  F
Sbjct: 541 QGPGIAFVVYPEALTRLPLSPFWAIIFFLMLLTLGLDTMFATIETIVTSISDEF 594


>gi|156104886 CC chemokine receptor 10 [Homo sapiens]
          Length = 362

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 13/35 (37%)

Query: 114 WLLSLLLQLPLILF-------------LLFNEGLT 135
           WLLSLLL LP +LF             L+F EGLT
Sbjct: 166 WLLSLLLALPALLFSQDGQREGQRRCRLIFPEGLT 200


>gi|188528618 solute carrier family 6 (neurotransmitter transporter,
           GABA), member 1 [Homo sapiens]
          Length = 599

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 123 PLILFLLFNEGLTNLPLEKAIHII-FTLFLAFQVVAAFLTLRKMVNQLAVRFHLQDFDRL 181
           P + FL + E +T LP+     I+ F++ L   + + F T+   +  L     + ++ RL
Sbjct: 361 PGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITAL-----VDEYPRL 415

Query: 182 SANRGDMRRMRSCI 195
             NR ++     CI
Sbjct: 416 LRNRRELFIAAVCI 429


>gi|4885333 free fatty acid receptor 2 [Homo sapiens]
          Length = 330

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 71  ILPDYYKFIVIT--VIILITLIEAIRLYL-GYVGNLQEKVPELAGFWLLSLLLQLPLILF 127
           +LPD+   +++   +II +T + A  L L  +VG +++  P      LLSL L   L+L 
Sbjct: 1   MLPDWKSSLILMAYIIIFLTGLPANLLALRAFVGRIRQPQPAPVHILLLSLTLADLLLLL 60

Query: 128 LL 129
           LL
Sbjct: 61  LL 62


>gi|196123589 NADH dehydrogenase subunit 5 [Homo sapiens
           neanderthalensis]
          Length = 603

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 54  FPLWWVSSIMMLHMKYSILPDYYKFIVITVIILITLIEAIRLYLGYVG 101
           F LW+++S   ++  +     Y    +IT++IL+T     +L++G+ G
Sbjct: 103 FSLWYMNSDPNINQFFK----YLLIFLITMLILVTANNLFQLFIGWEG 146


>gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens]
          Length = 603

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 54  FPLWWVSSIMMLHMKYSILPDYYKFIVITVIILITLIEAIRLYLGYVG 101
           F LW+++S   ++  +     Y    +IT++IL+T     +L++G+ G
Sbjct: 103 FSLWYMNSDPNINQFFK----YLLIFLITMLILVTANNLFQLFIGWEG 146


>gi|240255505 potassium channel, subfamily T, member 1 [Homo
           sapiens]
          Length = 1235

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 15/77 (19%)

Query: 55  PLWWVSSIMMLHMKYSILPDYYKFIVITVIILITLIEAIRL-YLGYVGNLQEKVPELAGF 113
           P+ WV   M L            + +  ++ +I+ +E + L YL Y GN+ E++  ++  
Sbjct: 166 PILWVERKMTL------------WAIQVIVAIISFLETMLLIYLSYKGNIWEQIFRVS-- 211

Query: 114 WLLSLLLQLPLILFLLF 130
           ++L ++  LP I+ + +
Sbjct: 212 FVLEMINTLPFIITIFW 228


>gi|111378393 sodium channel, voltage-gated, type VII, alpha [Homo
           sapiens]
          Length = 1682

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 8   RQRLGNFSRAVFSDSNRTGPESNEGPENEMVSSLALQM 45
           +QR+G  S+ +     +TG E  EG E +   ++ ++M
Sbjct: 401 KQRVGEISKKIEPKFQQTGKELQEGNETDEAKTIQIEM 438


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.143    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,702,565
Number of Sequences: 37866
Number of extensions: 252822
Number of successful extensions: 747
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 21
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.