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Search of human proteins with 217330586
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|217330586 stimulated by retinoic acid gene 6 homolog isoform
c [Homo sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|217330586 stimulated by retinoic acid gene 6 homolog isoform ... 327 3e-90
gi|217330582 stimulated by retinoic acid gene 6 homolog isoform ... 297 3e-81
gi|217330580 stimulated by retinoic acid gene 6 homolog isoform ... 297 3e-81
gi|217330578 stimulated by retinoic acid gene 6 homolog isoform ... 297 3e-81
gi|217330584 stimulated by retinoic acid gene 6 homolog isoform ... 271 2e-73
gi|83776598 virus-induced signaling adapter [Homo sapiens] 28 3.3
gi|4759328 class I cytokine receptor [Homo sapiens] 28 3.3
gi|16753221 cadherin 22 precursor [Homo sapiens] 28 4.3
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 27 5.6
gi|119964718 desmoglein 3 preproprotein [Homo sapiens] 27 7.4
gi|223972645 zinc finger protein 509 [Homo sapiens] 27 7.4
gi|24308211 integrator complex subunit 2 [Homo sapiens] 27 9.6
gi|4503327 cytochrome b5 reductase 3 isoform m [Homo sapiens] 27 9.6
gi|193794826 cytochrome b5 reductase 3 isoform s [Homo sapiens] 27 9.6
gi|6552328 cytochrome b5 reductase 3 isoform s [Homo sapiens] 27 9.6
gi|150378528 G protein-coupled receptor associated sorting prote... 27 9.6
gi|150378489 G protein-coupled receptor associated sorting prote... 27 9.6
gi|103472136 G protein-coupled receptor associated sorting prote... 27 9.6
gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a ... 27 9.6
gi|11056048 doublesex and mab-3 related transcription factor 3 [... 27 9.6
gi|71040096 Rho GTPase activating protein 30 isoform 2 [Homo sap... 27 9.6
>gi|217330586 stimulated by retinoic acid gene 6 homolog isoform c
[Homo sapiens]
Length = 159
Score = 327 bits (837), Expect = 3e-90
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS 60
MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS
Sbjct: 1 MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS 60
Query: 61 ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD 120
ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD
Sbjct: 61 ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD 120
Query: 121 EDALPFLTLASAPSQDGKTEAPRGNLPKITELRLVRAWI 159
EDALPFLTLASAPSQDGKTEAPRGNLPKITELRLVRAWI
Sbjct: 121 EDALPFLTLASAPSQDGKTEAPRGNLPKITELRLVRAWI 159
>gi|217330582 stimulated by retinoic acid gene 6 homolog isoform a
[Homo sapiens]
Length = 667
Score = 297 bits (760), Expect = 3e-81
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS 60
MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS
Sbjct: 1 MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS 60
Query: 61 ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD 120
ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD
Sbjct: 61 ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD 120
Query: 121 EDALPFLTLASAPSQDGKTEAPRG 144
EDALPFLTLASAPSQDGKTEAPRG
Sbjct: 121 EDALPFLTLASAPSQDGKTEAPRG 144
>gi|217330580 stimulated by retinoic acid gene 6 homolog isoform a
[Homo sapiens]
Length = 667
Score = 297 bits (760), Expect = 3e-81
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS 60
MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS
Sbjct: 1 MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS 60
Query: 61 ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD 120
ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD
Sbjct: 61 ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD 120
Query: 121 EDALPFLTLASAPSQDGKTEAPRG 144
EDALPFLTLASAPSQDGKTEAPRG
Sbjct: 121 EDALPFLTLASAPSQDGKTEAPRG 144
>gi|217330578 stimulated by retinoic acid gene 6 homolog isoform a
[Homo sapiens]
Length = 667
Score = 297 bits (760), Expect = 3e-81
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS 60
MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS
Sbjct: 1 MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS 60
Query: 61 ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD 120
ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD
Sbjct: 61 ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD 120
Query: 121 EDALPFLTLASAPSQDGKTEAPRG 144
EDALPFLTLASAPSQDGKTEAPRG
Sbjct: 121 EDALPFLTLASAPSQDGKTEAPRG 144
>gi|217330584 stimulated by retinoic acid gene 6 homolog isoform b
[Homo sapiens]
Length = 658
Score = 271 bits (693), Expect = 2e-73
Identities = 135/144 (93%), Positives = 135/144 (93%), Gaps = 9/144 (6%)
Query: 1 MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS 60
MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS
Sbjct: 1 MSSQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS 60
Query: 61 ILVLLLLAMLVRRRQLWPDCVRGRPGLPSPVDFLAGDRPRAVPAAVFMVLLSSLCLLLPD 120
ILVLLLLAMLVRRRQLWPDCVRGRPGLP RPRAVPAAVFMVLLSSLCLLLPD
Sbjct: 61 ILVLLLLAMLVRRRQLWPDCVRGRPGLP---------RPRAVPAAVFMVLLSSLCLLLPD 111
Query: 121 EDALPFLTLASAPSQDGKTEAPRG 144
EDALPFLTLASAPSQDGKTEAPRG
Sbjct: 112 EDALPFLTLASAPSQDGKTEAPRG 135
>gi|83776598 virus-induced signaling adapter [Homo sapiens]
Length = 540
Score = 28.1 bits (61), Expect = 3.3
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 11 SPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLSILVLLLLAML 70
+PG D G PQ + Q E EVP CH P L+ +A +LV+ LL +L
Sbjct: 482 NPGPPADPDGGP----RPQADRKFQ-EREVP-CHRPSPGALWLQ-VAVTGVLVVTLLVVL 534
Query: 71 VRRR 74
RRR
Sbjct: 535 YRRR 538
>gi|4759328 class I cytokine receptor [Homo sapiens]
Length = 636
Score = 28.1 bits (61), Expect = 3.3
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 11 SPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLS 60
+PG SY W+ GG EL PEG + C + IP G A +++++
Sbjct: 257 APGPCVQVSYKVWFW---VGGRELSPEG-ITCCCSLIPSGAEWARVSAVN 302
>gi|16753221 cadherin 22 precursor [Homo sapiens]
Length = 828
Score = 27.7 bits (60), Expect = 4.3
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 38 GEVPSCHT-------SIPPGLYHACLASLSILVLLLLAMLVRRR 74
G + SC+T S+ PG A L + ILV+L+L +L RR
Sbjct: 606 GTIQSCNTTAFVMAASLSPGALIALLVCVLILVVLVLLILTLRR 649
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 27.3 bits (59), Expect = 5.6
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 29 QGGEELQPEGEVPSCHTSIPPGLYHACLASLSILVLLLLAMLVRRRQ---LWPDCVRGRP 85
QG + +P G + +C S P G+ A L + L+ Q L P+ G P
Sbjct: 151 QGINKDRPTGRLSTCLLSAPSGIQRLPWAELICPRFVHKEGLMVGHQPSTLPPELPSGPP 210
Query: 86 GLPSP 90
GLPSP
Sbjct: 211 GLPSP 215
>gi|119964718 desmoglein 3 preproprotein [Homo sapiens]
Length = 999
Score = 26.9 bits (58), Expect = 7.4
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 90 PVDFLAGDRPRAVPAAVFMVLLSSLCLLLPDEDALP----FLTLASAPSQDGKTEAPR 143
P F D+P +PA + L++ LL ++ +P ++L SQ+ + E PR
Sbjct: 523 PYTFALEDQPVKLPAVWSITTLNATSALLRAQEQIPPGVYHISLVLTDSQNNRCEMPR 580
>gi|223972645 zinc finger protein 509 [Homo sapiens]
Length = 765
Score = 26.9 bits (58), Expect = 7.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 3 SQPAGNQTSPGATEDYSYGSWYIDEPQGGEELQPEG 38
++P QT P A Y+Y +D P GGE LQ +G
Sbjct: 678 AKPQMQQTQPQA---YAYSD--VDTPAGGEPLQADG 708
>gi|24308211 integrator complex subunit 2 [Homo sapiens]
Length = 1204
Score = 26.6 bits (57), Expect = 9.6
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 94 LAGDRPRAVPAAVFMVLLSSLCLLLPDEDALPFLTLASAPSQD 136
L RP A PA V V L S C+L L F TL S P Q+
Sbjct: 414 LMTSRPPATPAGVRFVSL-SFCML------LAFSTLVSTPEQE 449
>gi|4503327 cytochrome b5 reductase 3 isoform m [Homo sapiens]
Length = 301
Score = 26.6 bits (57), Expect = 9.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 14 ATEDYSYGSWYIDEPQGGEELQPEGEVP-SCHTSIPPGLYHACLASL 59
A E + YG +++E + L P E P PP + +ACL +L
Sbjct: 242 APEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNL 288
>gi|193794826 cytochrome b5 reductase 3 isoform s [Homo sapiens]
Length = 278
Score = 26.6 bits (57), Expect = 9.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 14 ATEDYSYGSWYIDEPQGGEELQPEGEVP-SCHTSIPPGLYHACLASL 59
A E + YG +++E + L P E P PP + +ACL +L
Sbjct: 219 APEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNL 265
>gi|6552328 cytochrome b5 reductase 3 isoform s [Homo sapiens]
Length = 278
Score = 26.6 bits (57), Expect = 9.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 14 ATEDYSYGSWYIDEPQGGEELQPEGEVP-SCHTSIPPGLYHACLASL 59
A E + YG +++E + L P E P PP + +ACL +L
Sbjct: 219 APEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNL 265
>gi|150378528 G protein-coupled receptor associated sorting protein
1 [Homo sapiens]
Length = 1395
Score = 26.6 bits (57), Expect = 9.6
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 7 GNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHT 45
G + PGA E+ +GSW+ E Q + + E SC T
Sbjct: 567 GEEARPGAEEETIFGSWFWAENQTYMDCRAE---TSCDT 602
>gi|150378489 G protein-coupled receptor associated sorting protein
1 [Homo sapiens]
Length = 1395
Score = 26.6 bits (57), Expect = 9.6
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 7 GNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHT 45
G + PGA E+ +GSW+ E Q + + E SC T
Sbjct: 567 GEEARPGAEEETIFGSWFWAENQTYMDCRAE---TSCDT 602
>gi|103472136 G protein-coupled receptor associated sorting protein
1 [Homo sapiens]
Length = 1395
Score = 26.6 bits (57), Expect = 9.6
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 7 GNQTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHT 45
G + PGA E+ +GSW+ E Q + + E SC T
Sbjct: 567 GEEARPGAEEETIFGSWFWAENQTYMDCRAE---TSCDT 602
>gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a
[Homo sapiens]
Length = 1701
Score = 26.6 bits (57), Expect = 9.6
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
Query: 19 SYGSWYIDEPQG--GEELQPEGEV-------PSCHTSIPPG 50
S SWY D P G GE + EG PS H S PPG
Sbjct: 245 SESSWY-DSPWGNAGELSEAEGSFLAPGMPDPSLHASFPPG 284
>gi|11056048 doublesex and mab-3 related transcription factor 3
[Homo sapiens]
Length = 472
Score = 26.6 bits (57), Expect = 9.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 55 CLASLSILVL----LLLAMLVRRRQ--------LWPDCVRGRPGLPSPVDFLAGDRP 99
C IL++ ++ A + RRQ L PD +R PG P P D +A +P
Sbjct: 53 CTCEKCILIIERQRVMAAQVALRRQQANESLESLIPDSLRALPGPPPPGDAVAAPQP 109
>gi|71040096 Rho GTPase activating protein 30 isoform 2 [Homo
sapiens]
Length = 890
Score = 26.6 bits (57), Expect = 9.6
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 9 QTSPGATEDYSYGSWYIDEPQGGEELQPEGEVPSCHTSIPPGLYHACLASLSILVLLLLA 68
Q PG D + +P EE++PEG+ PS P G C L + + L +
Sbjct: 662 QAEPGGRLDIREEAEGTPQPPQPEEMEPEGQ-PS-----PDGCLCPCSLGLGGVGMRLAS 715
Query: 69 MLVRRRQLWPDCVRGRPGLPSPVDF 93
LV+ +Q VR P +P F
Sbjct: 716 TLVQVQQ-----VRSVPVVPPKPQF 735
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,793,396
Number of Sequences: 37866
Number of extensions: 404326
Number of successful extensions: 1093
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1079
Number of HSP's gapped (non-prelim): 28
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.