Search of human proteins with 21687129

Search of human proteins with 21687129

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21687129 NudC domain containing 2 [Homo sapiens]
         (157 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21687129 NudC domain containing 2 [Homo sapiens]                   327   2e-90
gi|189571679 NudC domain containing 1 isoform 2 [Homo sapiens]         44   4e-05
gi|189571677 NudC domain containing 1 isoform 1 [Homo sapiens]         44   4e-05
gi|5729953 nuclear distribution gene C homolog [Homo sapiens]          44   6e-05
gi|122939165 NudC domain containing 3 [Homo sapiens]                   37   0.009
gi|105990535 coagulation factor V precursor [Homo sapiens]             28   3.2  
gi|10863935 reticulon 1 isoform A [Homo sapiens]                       28   3.2  
gi|226437577 sulfatase modifying factor 2 isoform g [Homo sapiens]     28   4.2  
gi|194248090 sulfatase modifying factor 2 isoform e precursor [H...    28   4.2  
gi|194248088 sulfatase modifying factor 2 isoform b precursor [H...    28   4.2  
gi|194248087 sulfatase modifying factor 2 isoform c precursor [H...    28   4.2  
gi|30039692 NIMA-related kinase 8 [Homo sapiens]                       27   5.5  
gi|50726981 radical S-adenosyl methionine and flavodoxin domains...    27   7.1  
gi|23111026 sorting nexin 11 [Homo sapiens]                            27   9.3  
gi|23111028 sorting nexin 11 [Homo sapiens]                            27   9.3  

>gi|21687129 NudC domain containing 2 [Homo sapiens]
          Length = 157

 Score =  327 bits (839), Expect = 2e-90
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MSAPFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE 60
           MSAPFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE
Sbjct: 1   MSAPFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE 60

Query: 61  ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQR 120
           ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQR
Sbjct: 61  ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQR 120

Query: 121 KLTLERFQKENPGFDFSGAEISGNYTKGGPDFSNLEK 157
           KLTLERFQKENPGFDFSGAEISGNYTKGGPDFSNLEK
Sbjct: 121 KLTLERFQKENPGFDFSGAEISGNYTKGGPDFSNLEK 157


>gi|189571679 NudC domain containing 1 isoform 2 [Homo sapiens]
          Length = 554

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 17  PWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGREILKGKLFDSTIADEGT 76
           P   W QT +++ + +++P  +  +DIQ      H+ + +   + L+GKL+ S   +  T
Sbjct: 247 PLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSIDHESST 306

Query: 77  WTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLER 126
           W +++   + I L   K++    W  L+  +   +  ++D  Q     ER
Sbjct: 307 WIIKESNSLEISL--IKKNEGLTWPELVIGDKQGE-LIRDSAQCAAIAER 353


>gi|189571677 NudC domain containing 1 isoform 1 [Homo sapiens]
          Length = 583

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 17  PWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGREILKGKLFDSTIADEGT 76
           P   W QT +++ + +++P  +  +DIQ      H+ + +   + L+GKL+ S   +  T
Sbjct: 276 PLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSIDHESST 335

Query: 77  WTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLER 126
           W +++   + I L   K++    W  L+  +   +  ++D  Q     ER
Sbjct: 336 WIIKESNSLEISL--IKKNEGLTWPELVIGDKQGE-LIRDSAQCAAIAER 382


>gi|5729953 nuclear distribution gene C homolog [Homo sapiens]
          Length = 331

 Score = 43.9 bits (102), Expect = 6e-05
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 20  QWYQTLEEVFIEVQVPPGTR--AQDIQCGLQSRHVALSVGGRE-ILKGKLFDSTIADEGT 76
           +W QTL E+ + V      R   +D+   +Q RH+ + + G+  I+ G+L++    +E +
Sbjct: 173 RWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESS 232

Query: 77  WTLEDRKMVRIVLTKTKRDAANCWTSLLESE 107
           W +ED K+V + L K  +     W+ L+ S+
Sbjct: 233 WLIEDGKVVTVHLEKINK--MEWWSRLVSSD 261


>gi|122939165 NudC domain containing 3 [Homo sapiens]
          Length = 361

 Score = 36.6 bits (83), Expect = 0.009
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 9   SGVVPCGTPWGQWYQTLEEVFIEVQVPPGT-RAQDIQCGLQSRHVALSV----GGREILK 63
           +G V     W Q Y  LE   + V VP    + + +   L S  + +++    G R +++
Sbjct: 183 NGAVRENYTWSQDYTDLE---VRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLME 239

Query: 64  GKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAAD 111
           GKL      +   W+LE  K V + L+K        W ++LE E   D
Sbjct: 240 GKLTHKINTESSLWSLEPGKCVLVNLSKV---GEYWWNAILEGEEPID 284


>gi|105990535 coagulation factor V precursor [Homo sapiens]
          Length = 2224

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 98   NCWT-SLLESEYAADPWVQDQMQRKLTLERFQKE 130
            N W+   L +E+A+ PW+Q  MQ+++ +   Q +
Sbjct: 1946 NAWSVEKLAAEFASKPWIQVDMQKEVIITGIQTQ 1979


>gi|10863935 reticulon 1 isoform A [Homo sapiens]
          Length = 776

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 9/111 (8%)

Query: 1   MSAPFEERSGVVPCGTPWGQWYQTLEEVFIEVQVP----PGTRAQDIQCGLQSRHVALSV 56
           M+AP + +  ++P   P  QW +   E   E   P    P  +A +   GL +R  A   
Sbjct: 1   MAAPGDPQDELLPLAGPGSQWLRHRGEGENEAVTPKGATPAPQAGEPSPGLGAR--AREA 58

Query: 57  GGREILKGKLFDSTIADEGTWT---LEDRKMVRIVLTKTKRDAANCWTSLL 104
             RE   G    S +A E   T        M     T +K    +C+TSL+
Sbjct: 59  ASREAGSGPARQSPVAMETASTGVAGVSSAMDHTFSTTSKDGEGSCYTSLI 109


>gi|226437577 sulfatase modifying factor 2 isoform g [Homo sapiens]
          Length = 213

 Score = 27.7 bits (60), Expect = 4.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 5   FEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQD 42
           F  R G+     PWG W+Q       + + P G +A+D
Sbjct: 83  FAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAED 120


>gi|194248090 sulfatase modifying factor 2 isoform e precursor [Homo
           sapiens]
          Length = 358

 Score = 27.7 bits (60), Expect = 4.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 5   FEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQD 42
           F  R G+     PWG W+Q       + + P G +A+D
Sbjct: 190 FAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAED 227


>gi|194248088 sulfatase modifying factor 2 isoform b precursor [Homo
           sapiens]
          Length = 320

 Score = 27.7 bits (60), Expect = 4.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 5   FEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQD 42
           F  R G+     PWG W+Q       + + P G +A+D
Sbjct: 190 FAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAED 227


>gi|194248087 sulfatase modifying factor 2 isoform c precursor [Homo
           sapiens]
          Length = 305

 Score = 27.7 bits (60), Expect = 4.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 5   FEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQD 42
           F  R G+     PWG W+Q       + + P G +A+D
Sbjct: 175 FAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAED 212


>gi|30039692 NIMA-related kinase 8 [Homo sapiens]
          Length = 692

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 31  EVQVPPGTRAQDIQCGLQSRHVALSVGGREILKG 64
           +V +PPG  AQ + CG+ S  + L+V G+ +  G
Sbjct: 488 QVPMPPGQEAQRVVCGIDSSMI-LTVPGQALACG 520


>gi|50726981 radical S-adenosyl methionine and flavodoxin domains 1
           [Homo sapiens]
          Length = 732

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 13/62 (20%)

Query: 13  PCGTPWGQWYQTLEEVFIEVQVP------------PGTRAQDIQCGLQSRHVALSVGGRE 60
           P GT W +W     E+ ++  +             PG +A+  + G+  +H ALS+ G  
Sbjct: 430 PVGTEW-RWKMDQPEMILKEAIENHQNMIKQFKGVPGVKAERFEEGMTVKHCALSLVGEP 488

Query: 61  IL 62
           I+
Sbjct: 489 IM 490


>gi|23111026 sorting nexin 11 [Homo sapiens]
          Length = 270

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 60  EILKGKLFDSTIADEGTW-TLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQM 118
           E++  ++ D  + +EG+W +  D K    +   T   A    TS +   Y    W++ Q+
Sbjct: 15  EVITVRVQDPRVQNEGSWNSYVDYK----IFLHTNSKAFTAKTSCVRRRYREFVWLRKQL 70

Query: 119 QRKLTL 124
           QR   L
Sbjct: 71  QRNAGL 76


>gi|23111028 sorting nexin 11 [Homo sapiens]
          Length = 270

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 60  EILKGKLFDSTIADEGTW-TLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQM 118
           E++  ++ D  + +EG+W +  D K    +   T   A    TS +   Y    W++ Q+
Sbjct: 15  EVITVRVQDPRVQNEGSWNSYVDYK----IFLHTNSKAFTAKTSCVRRRYREFVWLRKQL 70

Query: 119 QRKLTL 124
           QR   L
Sbjct: 71  QRNAGL 76


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,324,940
Number of Sequences: 37866
Number of extensions: 254278
Number of successful extensions: 574
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 15
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.