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Search of human proteins with 216548145
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|216548145 RNA pseudouridylate synthase domain containing 3
isoform 1 [Homo sapiens]
(351 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|216548145 RNA pseudouridylate synthase domain containing 3 is... 696 0.0
gi|216548152 RNA pseudouridylate synthase domain containing 3 is... 656 0.0
gi|221316663 RNA pseudouridylate synthase domain containing 4 is... 111 8e-25
gi|221316667 RNA pseudouridylate synthase domain containing 4 is... 110 2e-24
gi|241982712 TBP-interacting protein isoform 1 [Homo sapiens] 35 0.10
gi|23308689 RNA pseudouridylate synthase domain containing 2 [Ho... 33 0.29
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 33 0.50
gi|40068047 cyclin M3 isoform 2 [Homo sapiens] 33 0.50
gi|40068049 cyclin M3 isoform 1 [Homo sapiens] 33 0.50
gi|148792970 TAF4b RNA polymerase II, TATA box binding protein (... 31 1.9
gi|239755238 PREDICTED: hypothetical protein [Homo sapiens] 30 4.2
gi|239749762 PREDICTED: hypothetical protein XP_002347151 [Homo ... 30 4.2
gi|239744021 PREDICTED: hypothetical protein XP_002343019 [Homo ... 30 4.2
gi|148612879 polyhomeotic like 3 [Homo sapiens] 29 7.2
gi|110227615 echinoderm microtubule associated protein like 3 [H... 29 7.2
gi|171906567 peripheral benzodiazepine receptor-associated prote... 29 7.2
gi|171906559 peripheral benzodiazepine receptor-associated prote... 29 7.2
gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens] 28 9.4
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 28 9.4
>gi|216548145 RNA pseudouridylate synthase domain containing 3
isoform 1 [Homo sapiens]
Length = 351
Score = 696 bits (1797), Expect = 0.0
Identities = 351/351 (100%), Positives = 351/351 (100%)
Query: 1 MRAVLAREMDGRRVLGRFWSGWRRGLGVRPVPEDAGFGTEARHQRQPRGSCQRSGPLGDQ 60
MRAVLAREMDGRRVLGRFWSGWRRGLGVRPVPEDAGFGTEARHQRQPRGSCQRSGPLGDQ
Sbjct: 1 MRAVLAREMDGRRVLGRFWSGWRRGLGVRPVPEDAGFGTEARHQRQPRGSCQRSGPLGDQ 60
Query: 61 PFAGLLPKNLSREELVDALRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLFSVLPELSQS 120
PFAGLLPKNLSREELVDALRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLFSVLPELSQS
Sbjct: 61 PFAGLLPKNLSREELVDALRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLFSVLPELSQS 120
Query: 121 LGLREQELQVVRASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTATYCAVTDGIPA 180
LGLREQELQVVRASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTATYCAVTDGIPA
Sbjct: 121 LGLREQELQVVRASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTATYCAVTDGIPA 180
Query: 181 ASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPL 240
ASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPL
Sbjct: 181 ASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPL 240
Query: 241 TVFSSQLQVHMVLQLCPVLGDHMYSARVGTVLGQRFLLPAENNKPQRQVLDEALLRRLHL 300
TVFSSQLQVHMVLQLCPVLGDHMYSARVGTVLGQRFLLPAENNKPQRQVLDEALLRRLHL
Sbjct: 241 TVFSSQLQVHMVLQLCPVLGDHMYSARVGTVLGQRFLLPAENNKPQRQVLDEALLRRLHL 300
Query: 301 TPSQAAQLPLHLHLHRLLLPGTRARDTPVELLAPLPPYFSRTLQCLGLRLQ 351
TPSQAAQLPLHLHLHRLLLPGTRARDTPVELLAPLPPYFSRTLQCLGLRLQ
Sbjct: 301 TPSQAAQLPLHLHLHRLLLPGTRARDTPVELLAPLPPYFSRTLQCLGLRLQ 351
>gi|216548152 RNA pseudouridylate synthase domain containing 3
isoform 2 [Homo sapiens]
Length = 336
Score = 656 bits (1692), Expect = 0.0
Identities = 336/351 (95%), Positives = 336/351 (95%), Gaps = 15/351 (4%)
Query: 1 MRAVLAREMDGRRVLGRFWSGWRRGLGVRPVPEDAGFGTEARHQRQPRGSCQRSGPLGDQ 60
MRAVLAREMDGRRVLGRFWSGWRRGLGVRPVPEDAGFGTEARHQRQPRGSCQRSGPLGDQ
Sbjct: 1 MRAVLAREMDGRRVLGRFWSGWRRGLGVRPVPEDAGFGTEARHQRQPRGSCQRSGPLGDQ 60
Query: 61 PFAGLLPKNLSREELVDALRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLFSVLPELSQS 120
PFAGLLPKNLSREELVDALRAAVVDRKG KPGELTLFSVLPELSQS
Sbjct: 61 PFAGLLPKNLSREELVDALRAAVVDRKG---------------KPGELTLFSVLPELSQS 105
Query: 121 LGLREQELQVVRASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTATYCAVTDGIPA 180
LGLREQELQVVRASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTATYCAVTDGIPA
Sbjct: 106 LGLREQELQVVRASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTATYCAVTDGIPA 165
Query: 181 ASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPL 240
ASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPL
Sbjct: 166 ASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPL 225
Query: 241 TVFSSQLQVHMVLQLCPVLGDHMYSARVGTVLGQRFLLPAENNKPQRQVLDEALLRRLHL 300
TVFSSQLQVHMVLQLCPVLGDHMYSARVGTVLGQRFLLPAENNKPQRQVLDEALLRRLHL
Sbjct: 226 TVFSSQLQVHMVLQLCPVLGDHMYSARVGTVLGQRFLLPAENNKPQRQVLDEALLRRLHL 285
Query: 301 TPSQAAQLPLHLHLHRLLLPGTRARDTPVELLAPLPPYFSRTLQCLGLRLQ 351
TPSQAAQLPLHLHLHRLLLPGTRARDTPVELLAPLPPYFSRTLQCLGLRLQ
Sbjct: 286 TPSQAAQLPLHLHLHRLLLPGTRARDTPVELLAPLPPYFSRTLQCLGLRLQ 336
>gi|221316663 RNA pseudouridylate synthase domain containing 4
isoform a [Homo sapiens]
Length = 377
Score = 111 bits (278), Expect = 8e-25
Identities = 84/289 (29%), Positives = 142/289 (49%), Gaps = 32/289 (11%)
Query: 75 LVDALRAAVVDRKGPLVTLNKPQGLPVTGKPG-ELTLFSVLPELSQSL-GLREQELQVVR 132
L AL ++ + LV +NKP GLPV G PG +L + VLP L++ L G + + L +
Sbjct: 91 LAKALTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCH 150
Query: 133 ASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTATYCAVTDGIPAASEGKIQAALKL 192
KE++G+++L+ A ++Q+ F R ++ Y A+T +P S G + +
Sbjct: 151 RLDKETTGVMVLAWDKDMAHQVQELF----RTRQVVKKYWAITVHVPMPSAGVVDIPIVE 206
Query: 193 EHIDG------VNLTVPVKAPSRKDIL----EGVKKTLSHFRVVATGSGCALVQLQPLTV 242
+ G + L+ + K + + ++ ++V+++ ALV+LQP+T
Sbjct: 207 KEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQVAVTQYQVLSSTLSSALVELQPITG 266
Query: 243 FSSQLQVHMVLQL-CPVLGDHMYSARVGTVLGQRFLLPAENNKPQRQVLDEALLRRLHLT 301
QL+VH+ L CP+LGDH YS + N+ Q L L++L L
Sbjct: 267 IKHQLRVHLSFGLDCPILGDHKYS---------------DWNRLAPQKLSVGTLKKLGLE 311
Query: 302 PSQAAQLPLHLHLHRLLLPGTRARDTPVELLAPLPPYFSRTLQCLGLRL 350
S+A +PLHLH +L+LP + + L+ LP +F +L L L +
Sbjct: 312 QSKARYIPLHLHARQLILPALGSGKEELNLVCKLPRFFVHSLHRLRLEM 360
>gi|221316667 RNA pseudouridylate synthase domain containing 4
isoform b [Homo sapiens]
Length = 346
Score = 110 bits (275), Expect = 2e-24
Identities = 82/279 (29%), Positives = 138/279 (49%), Gaps = 43/279 (15%)
Query: 75 LVDALRAAVVDRKGPLVTLNKPQGLPVTGKPG-ELTLFSVLPELSQSL-GLREQELQVVR 132
L AL ++ + LV +NKP GLPV G PG +L + VLP L++ L G + + L +
Sbjct: 91 LAKALTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCH 150
Query: 133 ASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTATYCAVTDGIPAASEGKIQAALKL 192
KE++G+++L+ A ++Q+ F R ++ Y A+T +P S G +
Sbjct: 151 RLDKETTGVMVLAWDKDMAHQVQELF----RTRQVVKKYWAITVHVPMPSAGVVD----- 201
Query: 193 EHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMV 252
+P+ + + + ++ ++V+++ ALV+LQP+T QL+VH+
Sbjct: 202 ---------IPI-------VEKEAQVAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLS 245
Query: 253 LQL-CPVLGDHMYSARVGTVLGQRFLLPAENNKPQRQVLDEALLRRLHLTPSQAAQLPLH 311
L CP+LGDH YS + N+ Q L L++L L S+A +PLH
Sbjct: 246 FGLDCPILGDHKYS---------------DWNRLAPQKLSVGTLKKLGLEQSKARYIPLH 290
Query: 312 LHLHRLLLPGTRARDTPVELLAPLPPYFSRTLQCLGLRL 350
LH +L+LP + + L+ LP +F +L L L +
Sbjct: 291 LHARQLILPALGSGKEELNLVCKLPRFFVHSLHRLRLEM 329
>gi|241982712 TBP-interacting protein isoform 1 [Homo sapiens]
Length = 1236
Score = 35.0 bits (79), Expect = 0.10
Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 25/146 (17%)
Query: 215 GVKKTLSHFRVVATGSG-----CALVQLQPLTVFSSQLQVHMVLQLCPVLGDHMYSARVG 269
G+K LS ATGSG C + Q + + Q V + L+ +L D + +R+G
Sbjct: 109 GLKTVLSELPPAATGSGLATNVCRKITGQLTSAIAQQEDVAVQLEALDILSDML--SRLG 166
Query: 270 TVLGQ------RFLLPAENNKPQRQVLDEALLRRLHLTPSQAAQLPLHLHLHRL-LLPGT 322
LG LLP + + P+ V A+ HL + + L + L H L LPG
Sbjct: 167 VPLGAFHASLLHCLLP-QLSSPRLAVRKRAVGALGHLAAACSTDLFVELADHLLDRLPGP 225
Query: 323 RARDTPVELLAPLPPYFSRTL-QCLG 347
R P P RTL QCLG
Sbjct: 226 R---------VPTSPTAIRTLIQCLG 242
>gi|23308689 RNA pseudouridylate synthase domain containing 2 [Homo
sapiens]
Length = 545
Score = 33.5 bits (75), Expect = 0.29
Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 22/206 (10%)
Query: 90 LVTLNKPQGLPV--TGKPGELTLFSVLPELSQSLGLREQELQVVRASGKESSGLVLLSSC 147
+V ++KP +PV G+ T+ +L + Q +EL + + +SG+++ +
Sbjct: 232 VVVVDKPSSIPVHPCGRFRHNTVIFILGKEHQL-----KELHPLHRLDRLTSGVLMFA-- 284
Query: 148 PQTASRLQKYFTHARRAQRPTATYCAVTDGIPAASEGKIQAALKLEHIDGVNLTVPVKAP 207
+TA+ ++ R Q C V P + L + + GV P P
Sbjct: 285 -KTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDPRGKP 343
Query: 208 SRKDILEGVKKTLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHMY-SA 266
E V + LS+ ++V+ +PLT + Q++VH+ P+L D +Y S
Sbjct: 344 C-----ETVFQRLSY------NGQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYNSV 392
Query: 267 RVGTVLGQRFLLPAENNKPQRQVLDE 292
G G+ +P N + R ++ E
Sbjct: 393 AWGPSRGRGGYIPKTNEELLRDLVAE 418
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 32.7 bits (73), Expect = 0.50
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 22 WRRGLGVRPVPEDAGFGTEARHQRQPRGSCQRSGPLGDQPFAGLLP 67
WR G G P E G ++ H PRG Q SGP P+ G++P
Sbjct: 207 WRDGGGRGP-DELEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMP 251
>gi|40068047 cyclin M3 isoform 2 [Homo sapiens]
Length = 659
Score = 32.7 bits (73), Expect = 0.50
Identities = 61/232 (26%), Positives = 83/232 (35%), Gaps = 41/232 (17%)
Query: 16 GRFWSGWRRGLGVRPVPEDA--------GFGTEARHQRQPRGS-CQRSGPLGDQPFAGLL 66
G +GW RG R P+ GF + P G+ C+ + LL
Sbjct: 42 GAAGAGWVRGGAARDTPDATFLLRLFGPGFANSSWSWVAPEGAGCREEAASPAGEWRALL 101
Query: 67 PKNLSREELV--DALRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLFSVLPELSQS-LGL 123
L E + AL A V+ G P G G L L ++ L S L L
Sbjct: 102 RLRLRAEAVRPHSALLAVRVEPGGGAAEEAAPPWALGLGAAGLLALAALARGLQLSALAL 161
Query: 124 REQELQVVRASGKES-------------------SGLVLLSSCPQTASRLQKYFTHARRA 164
E+QV+R SG E+ L+LL+S Q A + Y +RA
Sbjct: 162 APAEVQVLRESGSEAERAAARRLEPARRWAGCALGALLLLASLAQAALAVLLYRAAGQRA 221
Query: 165 QRPTATYCA-----VTDGIPAASEGKIQAALKLEHID----GVNLTVPVKAP 207
P A V + +PAA G+ AL + V LT+PV P
Sbjct: 222 V-PAVLGSAGLVFLVGEVVPAAVSGRWTLALAPRALGLSRLAVLLTLPVALP 272
>gi|40068049 cyclin M3 isoform 1 [Homo sapiens]
Length = 707
Score = 32.7 bits (73), Expect = 0.50
Identities = 61/232 (26%), Positives = 83/232 (35%), Gaps = 41/232 (17%)
Query: 16 GRFWSGWRRGLGVRPVPEDA--------GFGTEARHQRQPRGS-CQRSGPLGDQPFAGLL 66
G +GW RG R P+ GF + P G+ C+ + LL
Sbjct: 42 GAAGAGWVRGGAARDTPDATFLLRLFGPGFANSSWSWVAPEGAGCREEAASPAGEWRALL 101
Query: 67 PKNLSREELV--DALRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLFSVLPELSQS-LGL 123
L E + AL A V+ G P G G L L ++ L S L L
Sbjct: 102 RLRLRAEAVRPHSALLAVRVEPGGGAAEEAAPPWALGLGAAGLLALAALARGLQLSALAL 161
Query: 124 REQELQVVRASGKES-------------------SGLVLLSSCPQTASRLQKYFTHARRA 164
E+QV+R SG E+ L+LL+S Q A + Y +RA
Sbjct: 162 APAEVQVLRESGSEAERAAARRLEPARRWAGCALGALLLLASLAQAALAVLLYRAAGQRA 221
Query: 165 QRPTATYCA-----VTDGIPAASEGKIQAALKLEHID----GVNLTVPVKAP 207
P A V + +PAA G+ AL + V LT+PV P
Sbjct: 222 V-PAVLGSAGLVFLVGEVVPAAVSGRWTLALAPRALGLSRLAVLLTLPVALP 272
>gi|148792970 TAF4b RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 105kDa [Homo sapiens]
Length = 862
Score = 30.8 bits (68), Expect = 1.9
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 71 SREELVDALRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLFSVLPELSQSLGLREQELQV 130
S+ E + A R + TLN G PV K G +TL SV P
Sbjct: 374 SQSEKSIIVSGATAPRTVSVQTLNPLAG-PVGAKAGVVTLHSVGP--------------- 417
Query: 131 VRASGKESSGLVLL-SSCPQTASRLQKYFTHARRAQRPTATYCAVTDGIPAASEGKIQAA 189
A+G ++G LL +S P S T + + ++P + AVT +PA + G+ A
Sbjct: 418 TAATGGTTAGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGA 477
>gi|239755238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 29.6 bits (65), Expect = 4.2
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 11 GRRVLGRFWSGWRRGLGVRPVPEDAGFGTEARHQRQPRGSCQR-SGPLGDQ 60
GR ++ SGW R V +P AGFG A QR P G+ SG LG Q
Sbjct: 66 GRPLIDVKASGWLRRSPVGALP-GAGFGAHATGQRGPHGATPLFSGSLGLQ 115
>gi|239749762 PREDICTED: hypothetical protein XP_002347151 [Homo
sapiens]
Length = 142
Score = 29.6 bits (65), Expect = 4.2
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 11 GRRVLGRFWSGWRRGLGVRPVPEDAGFGTEARHQRQPRGSCQR-SGPLGDQ 60
GR ++ SGW R V +P AGFG A QR P G+ SG LG Q
Sbjct: 66 GRPLIDVKASGWLRRSPVGALP-GAGFGAHATGQRGPHGATPLFSGSLGLQ 115
>gi|239744021 PREDICTED: hypothetical protein XP_002343019 [Homo
sapiens]
Length = 142
Score = 29.6 bits (65), Expect = 4.2
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 11 GRRVLGRFWSGWRRGLGVRPVPEDAGFGTEARHQRQPRGSCQR-SGPLGDQ 60
GR ++ SGW R V +P AGFG A QR P G+ SG LG Q
Sbjct: 66 GRPLIDVKASGWLRRSPVGALP-GAGFGAHATGQRGPHGATPLFSGSLGLQ 115
>gi|148612879 polyhomeotic like 3 [Homo sapiens]
Length = 995
Score = 28.9 bits (63), Expect = 7.2
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 98 GLPVTGKPGELTLFSVLPELSQSLGLREQELQVVRASGKESSG--------LVLLSSCPQ 149
G P T G +T S + + S +L Q++ S SS ++L S+ P
Sbjct: 118 GRPSTSPTGSVTQQSSMSQTSINLSTSPTPAQLISRSQASSSTSGSITQQTMLLGSTSPT 177
Query: 150 -TASRLQKYFTHARRAQRPTATYCAVTDGIPAAS 182
TAS+ Q Y P T AV IP S
Sbjct: 178 LTASQAQMYLRAQMLIFTPATTVAAVQSDIPVVS 211
>gi|110227615 echinoderm microtubule associated protein like 3 [Homo
sapiens]
Length = 896
Score = 28.9 bits (63), Expect = 7.2
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 105 PGELTLFSVLPELSQSLGLREQELQVVRASGKESSGLVLLSSCPQT 150
PG+ L LSQ L ++EQE+++V+A+ E+ L+ L P +
Sbjct: 7 PGDGPAREALQSLSQRLRVQEQEMELVKAALAEALRLLRLQVPPSS 52
>gi|171906567 peripheral benzodiazepine receptor-associated protein
1 isoform b [Homo sapiens]
Length = 1797
Score = 28.9 bits (63), Expect = 7.2
Identities = 37/150 (24%), Positives = 53/150 (35%), Gaps = 11/150 (7%)
Query: 89 PLVTLNKPQGLPVTGKPGELTLFSVLPELSQSLGLREQELQVVRASGKESSGLVLLSSCP 148
P L G P G PGE T L LG E+E +V + + S S
Sbjct: 236 PGPALQARAGAPAPGAPGEATPQEDADNLPVILGEPEKEQRVQQLESELSKKRKKCESLE 295
Query: 149 QTA----SRLQKYFTHARRAQRPTATYCAVTDGIPAASEGKIQAALKLEHIDGVNLTVPV 204
Q A R ++ R+AQ A + + K Q + + G L V
Sbjct: 296 QEARKKQRRCEELELQLRQAQNENARLVEENSRLSGRATEKEQVEWENAELRGQLLGVTQ 355
Query: 205 -------KAPSRKDILEGVKKTLSHFRVVA 227
K+ + LE +++ L H R VA
Sbjct: 356 ERDSALRKSQGLQSKLESLEQVLKHMREVA 385
>gi|171906559 peripheral benzodiazepine receptor-associated protein
1 isoform a [Homo sapiens]
Length = 1857
Score = 28.9 bits (63), Expect = 7.2
Identities = 37/150 (24%), Positives = 53/150 (35%), Gaps = 11/150 (7%)
Query: 89 PLVTLNKPQGLPVTGKPGELTLFSVLPELSQSLGLREQELQVVRASGKESSGLVLLSSCP 148
P L G P G PGE T L LG E+E +V + + S S
Sbjct: 296 PGPALQARAGAPAPGAPGEATPQEDADNLPVILGEPEKEQRVQQLESELSKKRKKCESLE 355
Query: 149 QTA----SRLQKYFTHARRAQRPTATYCAVTDGIPAASEGKIQAALKLEHIDGVNLTVPV 204
Q A R ++ R+AQ A + + K Q + + G L V
Sbjct: 356 QEARKKQRRCEELELQLRQAQNENARLVEENSRLSGRATEKEQVEWENAELRGQLLGVTQ 415
Query: 205 -------KAPSRKDILEGVKKTLSHFRVVA 227
K+ + LE +++ L H R VA
Sbjct: 416 ERDSALRKSQGLQSKLESLEQVLKHMREVA 445
>gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens]
Length = 949
Score = 28.5 bits (62), Expect = 9.4
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 50 SCQRSGPLGDQPFAGLLPKNLSREELVDALRAAVVDRK---GPLVTLNKPQGLPVTGKP 105
+C SGP+ ++P + L K S+E+ D+ + D V P+ LP T P
Sbjct: 275 NCHPSGPMSEEPGSAQLEKRESKEQQEDSSATSFSDLPLYLDDTVPQQSPERLPSTEPP 333
>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
Length = 1488
Score = 28.5 bits (62), Expect = 9.4
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 50 SCQRSGPLGDQPFAGLLPKNLSREELVDALRAAVVDRK---GPLVTLNKPQGLPVTGKP 105
+C SGP+ ++P + L K S+E+ D+ + D V P+ LP T P
Sbjct: 480 NCHPSGPMSEEPGSAQLEKRESKEQQEDSSATSFSDLPLYLDDTVPQQSPERLPSTEPP 538
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,959,503
Number of Sequences: 37866
Number of extensions: 663113
Number of successful extensions: 1736
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1719
Number of HSP's gapped (non-prelim): 23
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.