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Search of human proteins with 214832565
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|214832565 hypothetical protein LOC80304 isoform 2 [Homo
sapiens]
(622 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|214832565 hypothetical protein LOC80304 isoform 2 [Homo sapiens] 1246 0.0
gi|13376798 hypothetical protein LOC80304 isoform 1 [Homo sapiens] 1218 0.0
gi|194097365 FtsJ homolog 3 [Homo sapiens] 34 0.35
gi|10947139 arginase 1 [Homo sapiens] 34 0.46
gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens] 32 1.3
gi|21361116 versican isoform 1 [Homo sapiens] 32 1.7
gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens] 32 2.3
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 31 3.0
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 31 3.0
gi|116235474 LKB1 interacting protein [Homo sapiens] 31 3.0
gi|8922446 THAP domain containing, apoptosis associated protein ... 31 3.9
gi|27886590 PTK2B protein tyrosine kinase 2 beta isoform a [Homo... 31 3.9
gi|27886588 PTK2B protein tyrosine kinase 2 beta isoform b [Homo... 31 3.9
gi|27886586 PTK2B protein tyrosine kinase 2 beta isoform a [Homo... 31 3.9
gi|27886584 PTK2B protein tyrosine kinase 2 beta isoform a [Homo... 31 3.9
gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens] 31 3.9
gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2 precur... 31 3.9
gi|5901932 leukocyte cell derived chemotaxin 1 isoform 1 precurs... 31 3.9
gi|15147240 brother of CDO [Homo sapiens] 31 3.9
gi|10092691 tight junction protein 3 [Homo sapiens] 30 5.1
gi|39930351 dynamin binding protein [Homo sapiens] 30 5.1
gi|157427195 hypothetical protein LOC347475 [Homo sapiens] 30 5.1
gi|239758038 PREDICTED: mucin 3A, cell surface associated, parti... 30 6.6
gi|169217962 PREDICTED: similar to phosphodiesterase 4D interact... 30 6.6
gi|239745211 PREDICTED: hypothetical protein XP_002343409 [Homo ... 30 6.6
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 30 6.6
gi|156071420 hypothetical protein LOC728912 [Homo sapiens] 30 6.6
gi|119709825 neuroblastoma breakpoint family, member 11-like [Ho... 30 6.6
gi|93204867 G protein-coupled receptor 158 [Homo sapiens] 30 6.6
gi|45430055 translokin [Homo sapiens] 30 6.6
>gi|214832565 hypothetical protein LOC80304 isoform 2 [Homo sapiens]
Length = 622
Score = 1246 bits (3225), Expect = 0.0
Identities = 622/622 (100%), Positives = 622/622 (100%)
Query: 1 MELGKGKLLRTGLNALHQAVHPIHGLAWTDGNQVVLTDLRLHSGEVKFGDSKVIGQFECV 60
MELGKGKLLRTGLNALHQAVHPIHGLAWTDGNQVVLTDLRLHSGEVKFGDSKVIGQFECV
Sbjct: 1 MELGKGKLLRTGLNALHQAVHPIHGLAWTDGNQVVLTDLRLHSGEVKFGDSKVIGQFECV 60
Query: 61 CGLSWAPPVADDTPVLLAVQHEKHVTVWQLCPSPMESSKWLTSQTCEIRGSLPILPQGCV 120
CGLSWAPPVADDTPVLLAVQHEKHVTVWQLCPSPMESSKWLTSQTCEIRGSLPILPQGCV
Sbjct: 61 CGLSWAPPVADDTPVLLAVQHEKHVTVWQLCPSPMESSKWLTSQTCEIRGSLPILPQGCV 120
Query: 121 WHPKCAILTVLTAQDVSIFPNVHSDDSQVKADINTQGRIHCACWTQDGLRLVVAVGSSLH 180
WHPKCAILTVLTAQDVSIFPNVHSDDSQVKADINTQGRIHCACWTQDGLRLVVAVGSSLH
Sbjct: 121 WHPKCAILTVLTAQDVSIFPNVHSDDSQVKADINTQGRIHCACWTQDGLRLVVAVGSSLH 180
Query: 181 SYIWDSAQKTLHRCSSCLVFDVDSHVCSITATVDSQVAIATELPLDKICGLNASETFNIP 240
SYIWDSAQKTLHRCSSCLVFDVDSHVCSITATVDSQVAIATELPLDKICGLNASETFNIP
Sbjct: 181 SYIWDSAQKTLHRCSSCLVFDVDSHVCSITATVDSQVAIATELPLDKICGLNASETFNIP 240
Query: 241 PNSKDMTPYALPVIGEVRSMDKEATDSETNSEVSVSSSYLEPLDLTHIHFNQHKSEGNSL 300
PNSKDMTPYALPVIGEVRSMDKEATDSETNSEVSVSSSYLEPLDLTHIHFNQHKSEGNSL
Sbjct: 241 PNSKDMTPYALPVIGEVRSMDKEATDSETNSEVSVSSSYLEPLDLTHIHFNQHKSEGNSL 300
Query: 301 ICLRKKDYLTGTGQDSSHLVLVTFKKAVTMTRKVTIPGILVPDLIAFNLKAHVVAVASNT 360
ICLRKKDYLTGTGQDSSHLVLVTFKKAVTMTRKVTIPGILVPDLIAFNLKAHVVAVASNT
Sbjct: 301 ICLRKKDYLTGTGQDSSHLVLVTFKKAVTMTRKVTIPGILVPDLIAFNLKAHVVAVASNT 360
Query: 361 CNIILIYSVIPSSVPNIQQIRLENTERPKGICFLTDQLLLILVGKQKLTDTTFLPSSKSD 420
CNIILIYSVIPSSVPNIQQIRLENTERPKGICFLTDQLLLILVGKQKLTDTTFLPSSKSD
Sbjct: 361 CNIILIYSVIPSSVPNIQQIRLENTERPKGICFLTDQLLLILVGKQKLTDTTFLPSSKSD 420
Query: 421 QYAISLIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPDFCHQNKGLLL 480
QYAISLIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPDFCHQNKGLLL
Sbjct: 421 QYAISLIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPDFCHQNKGLLL 480
Query: 481 TVNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPP 540
TVNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPP
Sbjct: 481 TVNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPP 540
Query: 541 RLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRLHNGKKSSSVYPLSQDLPY 600
RLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRLHNGKKSSSVYPLSQDLPY
Sbjct: 541 RLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRLHNGKKSSSVYPLSQDLPY 600
Query: 601 VHIIYQIPTGFFSLLTVRALSR 622
VHIIYQIPTGFFSLLTVRALSR
Sbjct: 601 VHIIYQIPTGFFSLLTVRALSR 622
>gi|13376798 hypothetical protein LOC80304 isoform 1 [Homo sapiens]
Length = 721
Score = 1218 bits (3152), Expect = 0.0
Identities = 607/608 (99%), Positives = 607/608 (99%)
Query: 1 MELGKGKLLRTGLNALHQAVHPIHGLAWTDGNQVVLTDLRLHSGEVKFGDSKVIGQFECV 60
MELGKGKLLRTGLNALHQAVHPIHGLAWTDGNQVVLTDLRLHSGEVKFGDSKVIGQFECV
Sbjct: 1 MELGKGKLLRTGLNALHQAVHPIHGLAWTDGNQVVLTDLRLHSGEVKFGDSKVIGQFECV 60
Query: 61 CGLSWAPPVADDTPVLLAVQHEKHVTVWQLCPSPMESSKWLTSQTCEIRGSLPILPQGCV 120
CGLSWAPPVADDTPVLLAVQHEKHVTVWQLCPSPMESSKWLTSQTCEIRGSLPILPQGCV
Sbjct: 61 CGLSWAPPVADDTPVLLAVQHEKHVTVWQLCPSPMESSKWLTSQTCEIRGSLPILPQGCV 120
Query: 121 WHPKCAILTVLTAQDVSIFPNVHSDDSQVKADINTQGRIHCACWTQDGLRLVVAVGSSLH 180
WHPKCAILTVLTAQDVSIFPNVHSDDSQVKADINTQGRIHCACWTQDGLRLVVAVGSSLH
Sbjct: 121 WHPKCAILTVLTAQDVSIFPNVHSDDSQVKADINTQGRIHCACWTQDGLRLVVAVGSSLH 180
Query: 181 SYIWDSAQKTLHRCSSCLVFDVDSHVCSITATVDSQVAIATELPLDKICGLNASETFNIP 240
SYIWDSAQKTLHRCSSCLVFDVDSHVCSITATVDSQVAIATELPLDKICGLNASETFNIP
Sbjct: 181 SYIWDSAQKTLHRCSSCLVFDVDSHVCSITATVDSQVAIATELPLDKICGLNASETFNIP 240
Query: 241 PNSKDMTPYALPVIGEVRSMDKEATDSETNSEVSVSSSYLEPLDLTHIHFNQHKSEGNSL 300
PNSKDMTPYALPVIGEVRSMDKEATDSETNSEVSVSSSYLEPLDLTHIHFNQHKSEGNSL
Sbjct: 241 PNSKDMTPYALPVIGEVRSMDKEATDSETNSEVSVSSSYLEPLDLTHIHFNQHKSEGNSL 300
Query: 301 ICLRKKDYLTGTGQDSSHLVLVTFKKAVTMTRKVTIPGILVPDLIAFNLKAHVVAVASNT 360
ICLRKKDYLTGTGQDSSHLVLVTFKKAVTMTRKVTIPGILVPDLIAFNLKAHVVAVASNT
Sbjct: 301 ICLRKKDYLTGTGQDSSHLVLVTFKKAVTMTRKVTIPGILVPDLIAFNLKAHVVAVASNT 360
Query: 361 CNIILIYSVIPSSVPNIQQIRLENTERPKGICFLTDQLLLILVGKQKLTDTTFLPSSKSD 420
CNIILIYSVIPSSVPNIQQIRLENTERPKGICFLTDQLLLILVGKQKLTDTTFLPSSKSD
Sbjct: 361 CNIILIYSVIPSSVPNIQQIRLENTERPKGICFLTDQLLLILVGKQKLTDTTFLPSSKSD 420
Query: 421 QYAISLIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPDFCHQNKGLLL 480
QYAISLIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPDFCHQNKGLLL
Sbjct: 421 QYAISLIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPDFCHQNKGLLL 480
Query: 481 TVNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPP 540
TVNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPP
Sbjct: 481 TVNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPP 540
Query: 541 RLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRLHNGKKSSSVYPLSQDLPY 600
RLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRLHNGKKSSSVYPLSQDLPY
Sbjct: 541 RLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRLHNGKKSSSVYPLSQDLPY 600
Query: 601 VHIIYQIP 608
VHIIYQ P
Sbjct: 601 VHIIYQKP 608
>gi|194097365 FtsJ homolog 3 [Homo sapiens]
Length = 847
Score = 34.3 bits (77), Expect = 0.35
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 532 DHTSTLEPPRLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRLHNGKKSSSV 591
+ ST + P ++ + E+E E+ ++ + E++R +L L +K
Sbjct: 344 EEDSTAGTTKQPSKEEEEEEEEEQLNQTLAEMKAQEVAELKRKKKKL---LREQRKQRER 400
Query: 592 YPLSQDLPYVHIIYQIPTGFFSLLTVR 618
L DLP V I + TG FSL T+R
Sbjct: 401 VELKMDLPGVSIADEGETGMFSLSTIR 427
>gi|10947139 arginase 1 [Homo sapiens]
Length = 322
Score = 33.9 bits (76), Expect = 0.46
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 3 LGKGKLLRTGLNALHQAVHPIHGLAWTDGNQVVLTDL-----RLHSGEVKFGDSKVIGQF 57
LG L G + H VHP G+ W D + + T L LH V F ++ G+
Sbjct: 97 LGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKI 156
Query: 58 ECVCGLSWAPP 68
V G SW P
Sbjct: 157 PDVPGFSWVTP 167
>gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens]
Length = 642
Score = 32.3 bits (72), Expect = 1.3
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 516 EPVTQPASLPRHSSTPDHTSTLEPPRLPQRKNLQSEKETYQLSKEVE 562
E T P+S HS T+EPP +P++ LQ K L ++E
Sbjct: 525 EAPTTPSSSDEHSPHNGSLFTMEPPHVPRKPPLQDVKHALDLRSKLE 571
>gi|21361116 versican isoform 1 [Homo sapiens]
Length = 3396
Score = 32.0 bits (71), Expect = 1.7
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 440 TSGESQTTYSTFSAPLNKANRKKLIESLSPDFCHQNKGLLLTVNTSSQNGRPGRTLIKEI 499
T G Q + F K NRKK E++ D ++K L+LT+ S+ ++ E+
Sbjct: 2516 TDGSFQDRFREFEDSTLKPNRKKPTENIIIDLDKEDKDLILTITESTI-----LEILPEL 2570
Query: 500 QSPLSSICD---------GSIALDAEPVTQPASLPRHSSTPDHTSTLEPPRLPQRK-NLQ 549
S ++I D + + + T+ S P S+ + + + + + NL
Sbjct: 2571 TSDKNTIIDIDHTKPVYEDILGMQTDIDTEVPSEPHDSNDESNDDSTQVQEIYEAAVNLS 2630
Query: 550 SEKETYQLSKEV 561
+ET++ S +V
Sbjct: 2631 LTEETFEGSADV 2642
>gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens]
Length = 931
Score = 31.6 bits (70), Expect = 2.3
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 482 VNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPPR 541
++T +N PG T + + SPL+ + L A P+ L + + L P
Sbjct: 463 LSTGDENSTPGDTFGEMVTSPLT-----QLTLQASPL---QILVKEEGPRAGSCCLSPGG 514
Query: 542 LPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRLHNGKKSSSVYP 593
+ + ++ + K++E L+R L + Q+ + L +L K++ P
Sbjct: 515 RAELEGRDKDQMLQEKDKQIEALTRMLRQKQQLVERLKLQLEQEKRAQQPAP 566
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 31.2 bits (69), Expect = 3.0
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 501 SPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPPRLP-------QRKNLQSEKE 553
S LS S+ + +T L T T+E R K L+ EKE
Sbjct: 440 SELSEAPQKSLGHEVNELTSSRLLKLEMENQSLTKTVEELRTTVDSVEGNASKILKMEKE 499
Query: 554 TYQLSKEVEILSRNLVEMQRCLSELTN 580
+LSK+VEIL +V+ ++ L N
Sbjct: 500 NQRLSKKVEILENEIVQEKQSLQNCQN 526
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 31.2 bits (69), Expect = 3.0
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 501 SPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPPRLP-------QRKNLQSEKE 553
S LS S+ + +T L T T+E R K L+ EKE
Sbjct: 440 SELSEAPQKSLGHEVNELTSSRLLKLEMENQSLTKTVEELRTTVDSVEGNASKILKMEKE 499
Query: 554 TYQLSKEVEILSRNLVEMQRCLSELTN 580
+LSK+VEIL +V+ ++ L N
Sbjct: 500 NQRLSKKVEILENEIVQEKQSLQNCQN 526
>gi|116235474 LKB1 interacting protein [Homo sapiens]
Length = 1099
Score = 31.2 bits (69), Expect = 3.0
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 523 SLPRHSSTPDHTS-TLEPPRLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCL 575
S P+ ST DH S +L PP P+R L+S +L +VE+ S E Q CL
Sbjct: 772 SPPQAPSTRDHGSWSLSPP--PERCGLRSVDHRLRLFLDVEVFSDAQEEFQCCL 823
>gi|8922446 THAP domain containing, apoptosis associated protein 1
isoform 1 [Homo sapiens]
Length = 213
Score = 30.8 bits (68), Expect = 3.9
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 502 PLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPPRLPQRKNLQSEKETYQLSKEV 561
P+S + D +I L P+ P +L S DH T+E +++ Q E++ +L K++
Sbjct: 108 PVSQV-DAAIGLLMPPLQTPVNL---SVFCDHNYTVEDTMHQRKRIHQLEQQVEKLRKKL 163
Query: 562 EILSRNLVEMQRCLSELTNRLHNGKKSSSVYPLSQDLPYVHIIYQIPTGFFSLLTVRA 619
+ + +R L +L +H K+ V + YV +P +F ++ V A
Sbjct: 164 KTAQQRCRRQERQLEKLKEVVHFQKEKDDV----SERGYV----ILPNDYFEIVEVPA 213
>gi|27886590 PTK2B protein tyrosine kinase 2 beta isoform a [Homo
sapiens]
Length = 1009
Score = 30.8 bits (68), Expect = 3.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 539 PPRLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRL 582
PP+ P R QS + T L + +++ N++E+ R + EL N L
Sbjct: 855 PPQKPPRLGAQSIQPTANLDRTDDLVYLNVMELVRAVLELKNEL 898
>gi|27886588 PTK2B protein tyrosine kinase 2 beta isoform b [Homo
sapiens]
Length = 967
Score = 30.8 bits (68), Expect = 3.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 539 PPRLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRL 582
PP+ P R QS + T L + +++ N++E+ R + EL N L
Sbjct: 813 PPQKPPRLGAQSIQPTANLDRTDDLVYLNVMELVRAVLELKNEL 856
>gi|27886586 PTK2B protein tyrosine kinase 2 beta isoform a [Homo
sapiens]
Length = 1009
Score = 30.8 bits (68), Expect = 3.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 539 PPRLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRL 582
PP+ P R QS + T L + +++ N++E+ R + EL N L
Sbjct: 855 PPQKPPRLGAQSIQPTANLDRTDDLVYLNVMELVRAVLELKNEL 898
>gi|27886584 PTK2B protein tyrosine kinase 2 beta isoform a [Homo
sapiens]
Length = 1009
Score = 30.8 bits (68), Expect = 3.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 539 PPRLPQRKNLQSEKETYQLSKEVEILSRNLVEMQRCLSELTNRL 582
PP+ P R QS + T L + +++ N++E+ R + EL N L
Sbjct: 855 PPQKPPRLGAQSIQPTANLDRTDDLVYLNVMELVRAVLELKNEL 898
>gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens]
Length = 898
Score = 30.8 bits (68), Expect = 3.9
Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 24/169 (14%)
Query: 455 LNKANRKKLIESLSPDFCHQNKGLLLTVNTSSQNGRPGRTLIKEIQSPLSSIC------- 507
L K N+K + L D C + L + ++ + IK+++S + +
Sbjct: 212 LIKENKKH--QELFVDICSEKDNLREELKKRTETEKQHMNTIKQLESRIEELNKEVKASR 269
Query: 508 DGSIALDAEPVTQPASLPRHSSTPDHTSTLEPPRLPQRKN------LQSEKETYQLSKEV 561
D IA D L + + + + Q K ++ EKE+ L KE
Sbjct: 270 DQLIAQDVTAKNAVQQLHKEMAQRMEQANKKCEEARQEKEAMVMKYVRGEKESLDLRKEK 329
Query: 562 EILSRNLVEMQRCLSELTNRLHNGKKSSSVYPLSQDLPYVHIIYQIPTG 610
E L + L + + L + TN++ LSQ+ +H +Y+ G
Sbjct: 330 ETLEKKLRDANKELEKNTNKIKQ---------LSQEKGRLHQLYETKEG 369
>gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2 precursor
[Homo sapiens]
Length = 333
Score = 30.8 bits (68), Expect = 3.9
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 76 LLAVQHEKHVTVWQLCPSPMESSKWLTSQTCEIRGSLPI 114
++ V++E++ +W P++ + +L+S+ E+ G LPI
Sbjct: 160 IMPVKYEENSLIWVAVDQPVKDNSFLSSKVLELCGDLPI 198
>gi|5901932 leukocyte cell derived chemotaxin 1 isoform 1 precursor
[Homo sapiens]
Length = 334
Score = 30.8 bits (68), Expect = 3.9
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 76 LLAVQHEKHVTVWQLCPSPMESSKWLTSQTCEIRGSLPI 114
++ V++E++ +W P++ + +L+S+ E+ G LPI
Sbjct: 160 IMPVKYEENSLIWVAVDQPVKDNSFLSSKVLELCGDLPI 198
>gi|15147240 brother of CDO [Homo sapiens]
Length = 1114
Score = 30.8 bits (68), Expect = 3.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 521 PASLPRHSSTPDHTSTLEPPRLPQRKNLQSEKET 554
P + P+ SS PDH L PP P R + + ET
Sbjct: 588 PGASPQSSSQPDH-GRLSPPEAPDRPTISTASET 620
>gi|10092691 tight junction protein 3 [Homo sapiens]
Length = 952
Score = 30.4 bits (67), Expect = 5.1
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 492 GRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTSTLEPPRLPQRKNLQSE 551
G T+ E+ SP + I D + L P + PRH+ R P+ S
Sbjct: 313 GVTMADEMSSPPADISDLASELSQAPPSHIPPPPRHAQ-----------RSPEASQTDSP 361
Query: 552 KETYQLSKEVEILSRNLVEMQRCLSEL 578
E+ +L +E + SR + E SEL
Sbjct: 362 VESPRLRRESSVDSRTISEPDEQRSEL 388
>gi|39930351 dynamin binding protein [Homo sapiens]
Length = 1577
Score = 30.4 bits (67), Expect = 5.1
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 466 SLSPDFCHQNKGLLLTVNTSSQN-GRPGRTLIKEIQ--SPLSSICD-GSIALDAEPVTQP 521
S SP F QN G LT N SS + K+ Q SP CD G+++ P
Sbjct: 1369 SSSPRFPRQNSGSTLTFNPSSMAVSFTSGSCQKQPQDASPPPKECDQGTLSASLNPSNSE 1428
Query: 522 ASLPRHSSTPDHTS 535
+S R S PD TS
Sbjct: 1429 SSPSRCPSDPDSTS 1442
>gi|157427195 hypothetical protein LOC347475 [Homo sapiens]
Length = 325
Score = 30.4 bits (67), Expect = 5.1
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 11/172 (6%)
Query: 414 LPSSKSDQYAISLIVREIMLEEEPSITSGESQTTYSTFSAP--LNKANRKKLIESLSPDF 471
+ +++D + S + + E S S E +T ST + P L + RKK +E +SP
Sbjct: 86 ISKNETDTNSASYESSNVDVTTEESFNSTEDNSTCSTDNLPALLRQDIRKKFMERMSPKL 145
Query: 472 CHQNKGLLLTVNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTP 531
C L L + R + +E ++ + + +P+ + S +
Sbjct: 146 C-----LNLLNEELEELNMKYRKIEEEFENAEKELLHYKKEIFTKPLNFQETETDASKSD 200
Query: 532 DHTSTLEPPRLPQRKNLQSEKETYQLSKEV----EILSRNLVEMQRCLSELT 579
L + N+++ E Q +KEV + +RNL E R L T
Sbjct: 201 YELQALRNDLSEKATNVKNLSEQLQQAKEVIHKLNLENRNLKEAVRKLKHQT 252
>gi|239758038 PREDICTED: mucin 3A, cell surface associated, partial
[Homo sapiens]
Length = 909
Score = 30.0 bits (66), Expect = 6.6
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 15/130 (11%)
Query: 411 TTFLPSSKSDQYAISLIVREIMLEEEPSITSGESQTTYSTFSAP--LNKANRKKLIESLS 468
TT PS + Y S+ E PS TS + T ++ S P + + +
Sbjct: 88 TTETPSHSTPSYTTSITTTETPSHSTPSFTSSITTTETTSHSTPSFTSSIRTTETTSYST 147
Query: 469 PDFCHQNKGLLLTVNTSSQNGRPGR-TLIKEIQSPLSSICDGSIALDAEPVTQPASLPRH 527
P F N T+ ++ + P T I ++P SS S ++ T
Sbjct: 148 PSFTSSN-----TITETTSHSTPSYITSITTTETPSSSTPSFSSSITTTETTS------- 195
Query: 528 SSTPDHTSTL 537
STP TS++
Sbjct: 196 HSTPGFTSSI 205
>gi|169217962 PREDICTED: similar to phosphodiesterase 4D interacting
protein [Homo sapiens]
Length = 424
Score = 30.0 bits (66), Expect = 6.6
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 411 TTFLPSSKSDQYAISLIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPD 470
T F +++ ++Y + L ++ ++ I Y T N+A R+ E+ SP+
Sbjct: 192 TVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAERE---ETTSPE 248
Query: 471 FCHQN--KGLLLTVNTSSQNGRPGRTL 495
N K ++L S+ GR G TL
Sbjct: 249 CEEHNSLKEMVLMEGLCSEQGRRGSTL 275
>gi|239745211 PREDICTED: hypothetical protein XP_002343409 [Homo
sapiens]
Length = 1281
Score = 30.0 bits (66), Expect = 6.6
Identities = 53/230 (23%), Positives = 91/230 (39%), Gaps = 17/230 (7%)
Query: 366 IYSVIPSSVPNIQQIRLENTERPKGICFLTDQLLLILVGKQKLTDTTFLPSSKSDQYAIS 425
++ + S +Q +++ E K C +Q L+ +G+ + SK+ S
Sbjct: 743 LWEELESLAGQLQWAHMQDNEDLK--CLNWEQERLLELGRNHHASPNLMDESKTFSLTES 800
Query: 426 LI-----VREIMLEEEPSITSGESQ-TTYSTFSAPLNKANRKKLIESLSPDFCHQNKGLL 479
L + ++ EE + Q T + S+ + + R K IESL QN+G L
Sbjct: 801 LQQLSQQLNGVVSEELQKLRGSRYQEVTVALDSSYITISRRNKTIESLEKQESQQNRGAL 860
Query: 480 ---LTVNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTST 536
L S G +LI E L+S S E + R+++ T
Sbjct: 861 KRQLQAFRGSPLGPISTSLILEEAEDLASHLLYSWQHVGELEQEQRKADRYNN--QLTRD 918
Query: 537 LEPPRLPQRKNLQSEKETYQ----LSKEVEILSRNLVEMQRCLSELTNRL 582
+ RL N S KE Q L+++++++ + MQ L EL +L
Sbjct: 919 SDALRLELYNNSNSNKELKQENSALAEQLQVVLIDKAGMQCDLEELKKKL 968
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1 [Homo
sapiens]
Length = 2346
Score = 30.0 bits (66), Expect = 6.6
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 411 TTFLPSSKSDQYAISLIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPD 470
T F +++ ++Y + L ++ ++ I Y T N+A R+ E+ SP+
Sbjct: 1240 TVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAERE---ETTSPE 1296
Query: 471 FCHQN--KGLLLTVNTSSQNGRPGRTL 495
N K ++L S+ GR G TL
Sbjct: 1297 CEEHNSLKEMVLMEGLCSEQGRRGSTL 1323
>gi|156071420 hypothetical protein LOC728912 [Homo sapiens]
Length = 790
Score = 30.0 bits (66), Expect = 6.6
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 6/139 (4%)
Query: 418 KSDQYAIS-LIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPDFCHQNK 476
K DQ A + RE++ E+EP + YST S L + + S Q
Sbjct: 534 KEDQEATGPRLSRELLDEKEPEVLQDSLDRCYSTPSVYLGLTDSCQPYRSAFYVLEQQRI 593
Query: 477 GLLLTVNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTST 536
GL + ++ + ++E Q P + + EP SL R STP
Sbjct: 594 GLAVDMDEIEKYQE-----VEEDQDPSCPRLSRELLAEKEPEVLQDSLDRCYSTPSGYLE 648
Query: 537 LEPPRLPQRKNLQSEKETY 555
L P R + S +E Y
Sbjct: 649 LPDLGQPYRSAVYSLEEQY 667
>gi|119709825 neuroblastoma breakpoint family, member 11-like [Homo
sapiens]
Length = 790
Score = 30.0 bits (66), Expect = 6.6
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 6/139 (4%)
Query: 418 KSDQYAIS-LIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPDFCHQNK 476
K DQ A + RE++ E+EP + YST S L + + S Q
Sbjct: 534 KEDQEATGPRLSRELLDEKEPEVLQDSLDRCYSTPSVYLGLTDSCQPYRSAFYVLEQQRI 593
Query: 477 GLLLTVNTSSQNGRPGRTLIKEIQSPLSSICDGSIALDAEPVTQPASLPRHSSTPDHTST 536
GL + ++ + ++E Q P + + EP SL R STP
Sbjct: 594 GLAVDMDEIEKYQE-----VEEDQDPSCPRLSRELLAEKEPEVLQDSLDRCYSTPSGYLE 648
Query: 537 LEPPRLPQRKNLQSEKETY 555
L P R + S +E Y
Sbjct: 649 LPDLGQPYRSAVYSLEEQY 667
>gi|93204867 G protein-coupled receptor 158 [Homo sapiens]
Length = 1215
Score = 30.0 bits (66), Expect = 6.6
Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 33/151 (21%)
Query: 435 EEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPDF-CHQNKGLLLTVNTSS------- 486
EE S ESQ +T ++ L + KKL + L D + + L ++S
Sbjct: 829 EESSSLPTESQEEETTENSTLESLSGKKLTQKLKEDSEAESTESVPLVCKSASAHNLSSE 888
Query: 487 -QNGRPGRTLIKEIQSPLSSICDGSIAL--------------DAEPVTQPASLPRHSSTP 531
+ G P +++++ S ++S + ++ L +P+ + R+ S
Sbjct: 889 KKTGHPRTSMLQKSLSVIASAKEKTLGLAGKTQTAGVEERTKSQKPLPKDKETNRNHSNS 948
Query: 532 DHTSTLEP----------PRLPQRKNLQSEK 552
D+T T +P PR PQ+ + ++
Sbjct: 949 DNTETKDPAPQNSNPAEEPRKPQKSGIMKQQ 979
>gi|45430055 translokin [Homo sapiens]
Length = 500
Score = 30.0 bits (66), Expect = 6.6
Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 29/105 (27%)
Query: 515 AEPVTQPASLPRHSSTPDHTSTLEPP-------RLPQR-----------------KNLQS 550
AEP S+ RHSS+P + P R P + KNLQ
Sbjct: 19 AEPSRSNGSMVRHSSSPYVVYPSDKPFLNSDLRRSPSKPTLAYPESNSRAIFSALKNLQD 78
Query: 551 -----EKETYQLSKEVEILSRNLVEMQRCLSELTNRLHNGKKSSS 590
E E Q + V+ LSR +E ++ L E N K S
Sbjct: 79 KIRRLELERIQAEESVKTLSRETIEYKKVLDEQIQERENSKNEES 123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,249,709
Number of Sequences: 37866
Number of extensions: 1109733
Number of successful extensions: 3550
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3514
Number of HSP's gapped (non-prelim): 51
length of query: 622
length of database: 18,247,518
effective HSP length: 108
effective length of query: 514
effective length of database: 14,157,990
effective search space: 7277206860
effective search space used: 7277206860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.