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Search of human proteins with 21464101
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21464101 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase
activation protein, gamma polypeptide [Homo sapiens]
(247 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21464101 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase ... 489 e-139
gi|4507951 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase a... 426 e-120
gi|4507949 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase a... 360 e-100
gi|21328448 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase ... 360 e-100
gi|208973244 tyrosine 3/tryptophan 5 -monooxygenase activation p... 354 4e-98
gi|208973242 tyrosine 3/tryptophan 5 -monooxygenase activation p... 354 4e-98
gi|208973240 tyrosine 3/tryptophan 5 -monooxygenase activation p... 354 4e-98
gi|208973238 tyrosine 3/tryptophan 5 -monooxygenase activation p... 354 4e-98
gi|21735625 tyrosine 3/tryptophan 5 -monooxygenase activation pr... 354 4e-98
gi|4507953 tyrosine 3/tryptophan 5 -monooxygenase activation pro... 354 4e-98
gi|5803227 tyrosine 3/tryptophan 5 -monooxygenase activation pro... 336 1e-92
gi|5454052 stratifin [Homo sapiens] 320 7e-88
gi|5803225 tyrosine 3/tryptophan 5 -monooxygenase activation pro... 307 6e-84
gi|51317366 myosin XVIIIB [Homo sapiens] 33 0.30
gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens] 32 0.39
gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sap... 32 0.67
gi|207452735 epiplakin 1 [Homo sapiens] 32 0.67
gi|203098098 shroom family member 3 protein [Homo sapiens] 30 1.5
gi|4505917 exosome component 10 isoform 2 [Homo sapiens] 30 1.5
gi|62241001 conserved helix-loop-helix ubiquitous kinase [Homo s... 30 2.5
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 30 2.5
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 30 2.5
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 29 3.3
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 29 3.3
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 29 3.3
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 29 3.3
gi|114520609 neural precursor cell expressed, developmentally do... 29 3.3
gi|13129074 proline rich Gla (G-carboxyglutamic acid) 4 (transme... 29 3.3
gi|110347568 centrosomal protein 152kDa [Homo sapiens] 29 3.3
gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo ... 29 4.3
>gi|21464101 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase
activation protein, gamma polypeptide [Homo sapiens]
Length = 247
Score = 489 bits (1259), Expect = e-139
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW 60
MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
Sbjct: 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW 60
Query: 61 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK 120
RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
Sbjct: 61 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK 120
Query: 121 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS 180
VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
Sbjct: 121 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS 180
Query: 181 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD 240
VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
Sbjct: 181 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD 240
Query: 241 DGGEGNN 247
DGGEGNN
Sbjct: 241 DGGEGNN 247
>gi|4507951 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase
activation protein, eta polypeptide [Homo sapiens]
Length = 246
Score = 426 bits (1096), Expect = e-120
Identities = 214/246 (86%), Positives = 230/246 (93%)
Query: 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW 60
M DREQL+Q+ARLAEQAERYDDMA+AMK VTELNEPLSNE+RNLLSVAYKNVVGARRSSW
Sbjct: 1 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 60
Query: 61 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK 120
RVISSIEQKT ADGNEKK+E V+AYREKIEKELE VC DVLSLLD +LIKNC++ QYESK
Sbjct: 61 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK 120
Query: 121 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS 180
VFYLKMKGDYYRYLAEVA+GEK+ +VVE+SE AY EA EISKE MQPTHPIRLGLALN+S
Sbjct: 121 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS 180
Query: 181 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD 240
VFYYEIQNAPEQAC LAK AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD+
Sbjct: 181 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 240
Query: 241 DGGEGN 246
+ GEGN
Sbjct: 241 EAGEGN 246
>gi|4507949 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase
activation protein, beta polypeptide [Homo sapiens]
Length = 246
Score = 360 bits (923), Expect = e-100
Identities = 187/248 (75%), Positives = 212/248 (85%), Gaps = 6/248 (2%)
Query: 2 VDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWR 61
+D+ +LVQKA+LAEQAERYDDMAAAMK VTE LSNEERNLLSVAYKNVVGARRSSWR
Sbjct: 3 MDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWR 62
Query: 62 VISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKV 121
VISSIEQKT + NEKK +M + YREKIE EL+ +C DVL LLD YLI N TQ ESKV
Sbjct: 63 VISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNA--TQPESKV 118
Query: 122 FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSV 181
FYLKMKGDY+RYL+EVA+G+ + T V +S++AY EA EISK+ MQPTHPIRLGLALN+SV
Sbjct: 119 FYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV 178
Query: 182 FYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDD 241
FYYEI N+PE+AC LAKTAFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q D+
Sbjct: 179 FYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDE 238
Query: 242 G--GEGNN 247
G GEG N
Sbjct: 239 GDAGEGEN 246
>gi|21328448 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase
activation protein, beta polypeptide [Homo sapiens]
Length = 246
Score = 360 bits (923), Expect = e-100
Identities = 187/248 (75%), Positives = 212/248 (85%), Gaps = 6/248 (2%)
Query: 2 VDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWR 61
+D+ +LVQKA+LAEQAERYDDMAAAMK VTE LSNEERNLLSVAYKNVVGARRSSWR
Sbjct: 3 MDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWR 62
Query: 62 VISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKV 121
VISSIEQKT + NEKK +M + YREKIE EL+ +C DVL LLD YLI N TQ ESKV
Sbjct: 63 VISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNA--TQPESKV 118
Query: 122 FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSV 181
FYLKMKGDY+RYL+EVA+G+ + T V +S++AY EA EISK+ MQPTHPIRLGLALN+SV
Sbjct: 119 FYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV 178
Query: 182 FYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDD 241
FYYEI N+PE+AC LAKTAFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q D+
Sbjct: 179 FYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDE 238
Query: 242 G--GEGNN 247
G GEG N
Sbjct: 239 GDAGEGEN 246
>gi|208973244 tyrosine 3/tryptophan 5 -monooxygenase activation
protein, zeta polypeptide [Homo sapiens]
Length = 245
Score = 354 bits (908), Expect = 4e-98
Identities = 184/246 (74%), Positives = 209/246 (84%), Gaps = 6/246 (2%)
Query: 2 VDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWR 61
+D+ +LVQKA+LAEQAERYDDMAA MK+VTE LSNEERNLLSVAYKNVVGARRSSWR
Sbjct: 1 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR 60
Query: 62 VISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKV 121
V+SSIEQKT +G EKK +M R YREKIE EL +C DVLSLL+ +LI N S Q ESKV
Sbjct: 61 VVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKV 116
Query: 122 FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSV 181
FYLKMKGDYYRYLAEVA G+ + +V+ S++AY EA EISK+ MQPTHPIRLGLALN+SV
Sbjct: 117 FYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV 176
Query: 182 FYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD- 240
FYYEI N+PE+AC LAKTAFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q D
Sbjct: 177 FYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDE 236
Query: 241 -DGGEG 245
+ GEG
Sbjct: 237 AEAGEG 242
>gi|208973242 tyrosine 3/tryptophan 5 -monooxygenase activation
protein, zeta polypeptide [Homo sapiens]
Length = 245
Score = 354 bits (908), Expect = 4e-98
Identities = 184/246 (74%), Positives = 209/246 (84%), Gaps = 6/246 (2%)
Query: 2 VDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWR 61
+D+ +LVQKA+LAEQAERYDDMAA MK+VTE LSNEERNLLSVAYKNVVGARRSSWR
Sbjct: 1 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR 60
Query: 62 VISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKV 121
V+SSIEQKT +G EKK +M R YREKIE EL +C DVLSLL+ +LI N S Q ESKV
Sbjct: 61 VVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKV 116
Query: 122 FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSV 181
FYLKMKGDYYRYLAEVA G+ + +V+ S++AY EA EISK+ MQPTHPIRLGLALN+SV
Sbjct: 117 FYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV 176
Query: 182 FYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD- 240
FYYEI N+PE+AC LAKTAFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q D
Sbjct: 177 FYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDE 236
Query: 241 -DGGEG 245
+ GEG
Sbjct: 237 AEAGEG 242
>gi|208973240 tyrosine 3/tryptophan 5 -monooxygenase activation
protein, zeta polypeptide [Homo sapiens]
Length = 245
Score = 354 bits (908), Expect = 4e-98
Identities = 184/246 (74%), Positives = 209/246 (84%), Gaps = 6/246 (2%)
Query: 2 VDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWR 61
+D+ +LVQKA+LAEQAERYDDMAA MK+VTE LSNEERNLLSVAYKNVVGARRSSWR
Sbjct: 1 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR 60
Query: 62 VISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKV 121
V+SSIEQKT +G EKK +M R YREKIE EL +C DVLSLL+ +LI N S Q ESKV
Sbjct: 61 VVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKV 116
Query: 122 FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSV 181
FYLKMKGDYYRYLAEVA G+ + +V+ S++AY EA EISK+ MQPTHPIRLGLALN+SV
Sbjct: 117 FYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV 176
Query: 182 FYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD- 240
FYYEI N+PE+AC LAKTAFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q D
Sbjct: 177 FYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDE 236
Query: 241 -DGGEG 245
+ GEG
Sbjct: 237 AEAGEG 242
>gi|208973238 tyrosine 3/tryptophan 5 -monooxygenase activation
protein, zeta polypeptide [Homo sapiens]
Length = 245
Score = 354 bits (908), Expect = 4e-98
Identities = 184/246 (74%), Positives = 209/246 (84%), Gaps = 6/246 (2%)
Query: 2 VDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWR 61
+D+ +LVQKA+LAEQAERYDDMAA MK+VTE LSNEERNLLSVAYKNVVGARRSSWR
Sbjct: 1 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR 60
Query: 62 VISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKV 121
V+SSIEQKT +G EKK +M R YREKIE EL +C DVLSLL+ +LI N S Q ESKV
Sbjct: 61 VVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKV 116
Query: 122 FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSV 181
FYLKMKGDYYRYLAEVA G+ + +V+ S++AY EA EISK+ MQPTHPIRLGLALN+SV
Sbjct: 117 FYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV 176
Query: 182 FYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD- 240
FYYEI N+PE+AC LAKTAFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q D
Sbjct: 177 FYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDE 236
Query: 241 -DGGEG 245
+ GEG
Sbjct: 237 AEAGEG 242
>gi|21735625 tyrosine 3/tryptophan 5 -monooxygenase activation
protein, zeta polypeptide [Homo sapiens]
Length = 245
Score = 354 bits (908), Expect = 4e-98
Identities = 184/246 (74%), Positives = 209/246 (84%), Gaps = 6/246 (2%)
Query: 2 VDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWR 61
+D+ +LVQKA+LAEQAERYDDMAA MK+VTE LSNEERNLLSVAYKNVVGARRSSWR
Sbjct: 1 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR 60
Query: 62 VISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKV 121
V+SSIEQKT +G EKK +M R YREKIE EL +C DVLSLL+ +LI N S Q ESKV
Sbjct: 61 VVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKV 116
Query: 122 FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSV 181
FYLKMKGDYYRYLAEVA G+ + +V+ S++AY EA EISK+ MQPTHPIRLGLALN+SV
Sbjct: 117 FYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV 176
Query: 182 FYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD- 240
FYYEI N+PE+AC LAKTAFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q D
Sbjct: 177 FYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDE 236
Query: 241 -DGGEG 245
+ GEG
Sbjct: 237 AEAGEG 242
>gi|4507953 tyrosine 3/tryptophan 5 -monooxygenase activation
protein, zeta polypeptide [Homo sapiens]
Length = 245
Score = 354 bits (908), Expect = 4e-98
Identities = 184/246 (74%), Positives = 209/246 (84%), Gaps = 6/246 (2%)
Query: 2 VDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWR 61
+D+ +LVQKA+LAEQAERYDDMAA MK+VTE LSNEERNLLSVAYKNVVGARRSSWR
Sbjct: 1 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR 60
Query: 62 VISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKV 121
V+SSIEQKT +G EKK +M R YREKIE EL +C DVLSLL+ +LI N S Q ESKV
Sbjct: 61 VVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKV 116
Query: 122 FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSV 181
FYLKMKGDYYRYLAEVA G+ + +V+ S++AY EA EISK+ MQPTHPIRLGLALN+SV
Sbjct: 117 FYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV 176
Query: 182 FYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD- 240
FYYEI N+PE+AC LAKTAFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q D
Sbjct: 177 FYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDE 236
Query: 241 -DGGEG 245
+ GEG
Sbjct: 237 AEAGEG 242
>gi|5803227 tyrosine 3/tryptophan 5 -monooxygenase activation
protein, theta polypeptide [Homo sapiens]
Length = 245
Score = 336 bits (862), Expect = 1e-92
Identities = 173/246 (70%), Positives = 202/246 (82%), Gaps = 6/246 (2%)
Query: 2 VDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWR 61
+++ +L+QKA+LAEQAERYDDMA MK VTE LSNEERNLLSVAYKNVVG RRS+WR
Sbjct: 1 MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWR 60
Query: 62 VISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKV 121
VISSIEQKT D ++KK+++++ YREK+E EL ++C VL LLD YLI N T ESKV
Sbjct: 61 VISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANA--TNPESKV 116
Query: 122 FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSV 181
FYLKMKGDY+RYLAEVA G+ R +++S+ AY EA +ISK+ MQPTHPIRLGLALN+SV
Sbjct: 117 FYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSV 176
Query: 182 FYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQ--QD 239
FYYEI N PE AC LAKTAFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD ++
Sbjct: 177 FYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEE 236
Query: 240 DDGGEG 245
D EG
Sbjct: 237 CDAAEG 242
>gi|5454052 stratifin [Homo sapiens]
Length = 248
Score = 320 bits (820), Expect = 7e-88
Identities = 159/243 (65%), Positives = 199/243 (81%), Gaps = 2/243 (0%)
Query: 2 VDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWR 61
++R L+QKA+LAEQAERY+DMAA MK E E LS EERNLLSVAYKNVVG +R++WR
Sbjct: 1 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWR 60
Query: 62 VISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKV 121
V+SSIEQK++ +G+E+K VR YREK+E EL+ VC VL LLD++LIK + ES+V
Sbjct: 61 VLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDA--ESRV 118
Query: 122 FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSV 181
FYLKMKGDYYRYLAEVATG+ + +++S+ AY EA +ISK+ M PT+PIRLGLALN+SV
Sbjct: 119 FYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSV 178
Query: 182 FYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDD 241
F+YEI N+PE+A LAKT FD+A+A+L TL+EDSYKDSTLIMQLLRDNLTLWT+D ++
Sbjct: 179 FHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEE 238
Query: 242 GGE 244
GGE
Sbjct: 239 GGE 241
>gi|5803225 tyrosine 3/tryptophan 5 -monooxygenase activation
protein, epsilon polypeptide [Homo sapiens]
Length = 255
Score = 307 bits (786), Expect = 6e-84
Identities = 158/247 (63%), Positives = 190/247 (76%), Gaps = 4/247 (1%)
Query: 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW 60
M DRE LV +A+LAEQAERYD+M +MK V ++ L+ EERNLLSVAYKNV+GARR+SW
Sbjct: 1 MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASW 60
Query: 61 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK 120
R+ISSIEQK G E K++M+R YR+ +E EL+ +C D+L +LD +LI + ESK
Sbjct: 61 RIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTG--ESK 118
Query: 121 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS 180
VFY KMKGDY+RYLAE ATG R E+S AY A +I+ + PTHPIRLGLALN+S
Sbjct: 119 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFS 178
Query: 181 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD 240
VFYYEI N+P++AC LAK AFDDAIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q D
Sbjct: 179 VFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGD 238
Query: 241 DGGEGNN 247
GE N
Sbjct: 239 --GEEQN 243
>gi|51317366 myosin XVIIIB [Homo sapiens]
Length = 2567
Score = 32.7 bits (73), Expect = 0.30
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 12 RLAEQAERYDDMAAAMKNVTELNEPLSNEERNLL---SVAYKNVVGARRSSWRVISS-IE 67
+L +Q ++ + A+ +K E+ L + +R LL S+ V G + W++ SS +E
Sbjct: 1643 QLQQQLKQKEQEASQLKQQVEM---LQDHKRELLGSPSLGENCVAGLKERLWKLESSALE 1699
Query: 68 QKTSADGNEKKIEMVRAYREKIEKELEAVCQ 98
Q+ E I+ + R++ E E+E + Q
Sbjct: 1700 QQKIQSQQENTIKQLEQLRQRFELEIERMKQ 1730
>gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens]
Length = 284
Score = 32.3 bits (72), Expect = 0.39
Identities = 35/167 (20%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 4 REQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVI 63
+E+L + E+AE+ D + V E E+ L + K S R
Sbjct: 103 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKY 162
Query: 64 SSIEQKT-----SADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYE 118
+ +K + +E++ E+ + ++E+EL + Q + SL+ + + E +YE
Sbjct: 163 EEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYE 222
Query: 119 SKVFYLKMKGDYYRYLAEVA--TGEKRATVVESSEKAYSEAHEISKE 163
++ L+ K AE A + K ++ E+ + A E + E
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKEENVE 269
>gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sapiens]
Length = 1827
Score = 31.6 bits (70), Expect = 0.67
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 204 AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD 240
A++E T D YKD T I + D +LW Q DD
Sbjct: 1360 ALSEYKTETYDDYKDETTIDDSIMDADSLWVDTQDDD 1396
>gi|207452735 epiplakin 1 [Homo sapiens]
Length = 5090
Score = 31.6 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 34 NEPLSNEERNLLSVAYKNVV-----GARRSSWRVISSIEQKTSADGNEKKIEMVRAYREK 88
+E + +E R L + G + + W +++S E T EKK+++VR YR
Sbjct: 2092 SEHIDDETRRALEAEQVEITVGRFRGQKPTLWALLNS-EYVTE----EKKLQLVRMYRTH 2146
Query: 89 IEKELEAVCQDVLSLLDNYLIKN 111
+ L+ V Q +L L++ N
Sbjct: 2147 TRRALQTVAQLILELIEKQETSN 2169
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 30.4 bits (67), Expect = 1.5
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 38/146 (26%)
Query: 67 EQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKM 126
E++ AD NEKK E++ + K+E EA SLL + + N + E+ + L
Sbjct: 1772 EEEEQADVNEKKAELIGSLTHKLETLQEAKG----SLLTDIKLNNALGEEVEALISELCK 1827
Query: 127 KGDYYRY------------------------------LAEVATGEKRATVVESSE---KA 153
++ +Y L E A+ E+R+++ E +
Sbjct: 1828 PNEFDKYRMFIGDLDKVVNLLLSLSGRLARVENVLSGLGEDASNEERSSLYEKRKILAGQ 1887
Query: 154 YSEAHEISKEHMQPTHPIRLGLALNY 179
+ +A E+ KE++ + LG+ NY
Sbjct: 1888 HEDAREL-KENLDRRERVVLGILANY 1912
>gi|4505917 exosome component 10 isoform 2 [Homo sapiens]
Length = 860
Score = 30.4 bits (67), Expect = 1.5
Identities = 36/162 (22%), Positives = 71/162 (43%), Gaps = 34/162 (20%)
Query: 30 VTELNEPLSNE-ERNLLSVAYK---NVVGARRSSWRVISSI-------EQKTSADGNEKK 78
+T NEP + + ++ L+VA K N++ + + +R+IS+ QK S + +KK
Sbjct: 658 ITLFNEPSAEDSKKGPLTVAQKKAQNIMESFENPFRMISNRWKLAQVQVQKDSKEAVKKK 717
Query: 79 IEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVA 138
A RE+ ++ +A + +S+ +++N ++ + E A
Sbjct: 718 AAEQTAAREQAKEACKAAAEQAISVRQQVVLENAAKKR-------------------ERA 758
Query: 139 TGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS 180
T + R T +K + +ISK+ P P + +YS
Sbjct: 759 TSDPRTT----EQKQEKKRLKISKKPKDPEPPEKEFTPYDYS 796
>gi|62241001 conserved helix-loop-helix ubiquitous kinase [Homo
sapiens]
Length = 745
Score = 29.6 bits (65), Expect = 2.5
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 67 EQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKM 126
EQ T +EK M++A++E EK + V+ L++ ++ +E K Y +
Sbjct: 496 EQMTYGISSEK---MLKAWKEMEEKAIHYAEVGVIGYLEDQIMSLHAEIMELQKSPYGRR 552
Query: 127 KGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISK 162
+GD L + A + S+ +YS++ E+ K
Sbjct: 553 QGDLMESLEQRAIDLYKQLKHRPSDHSYSDSTEMVK 588
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 29.6 bits (65), Expect = 2.5
Identities = 35/156 (22%), Positives = 74/156 (47%), Gaps = 23/156 (14%)
Query: 4 REQLVQK--ARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWR 61
+EQ+ +K A++ E+A R +D N+ + ++ L + R + + A R S +
Sbjct: 799 KEQVEKKKSAQMLEEARRRED------NLNDSSQQLQDSLRKK-DDRIEELEEALRESVQ 851
Query: 62 VISSIE----QKTSADGN-EKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQ 116
+ + E Q+ SA N EK++E + EK+++ELE++ + + ++
Sbjct: 852 ITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESM---------KAKLSSTQQSL 902
Query: 117 YESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEK 152
E + ++ + ++L EV ++ A + SEK
Sbjct: 903 AEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK 938
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 29.6 bits (65), Expect = 2.5
Identities = 35/156 (22%), Positives = 74/156 (47%), Gaps = 23/156 (14%)
Query: 4 REQLVQK--ARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWR 61
+EQ+ +K A++ E+A R +D N+ + ++ L + R + + A R S +
Sbjct: 771 KEQVEKKKSAQMLEEARRRED------NLNDSSQQLQDSLRKK-DDRIEELEEALRESVQ 823
Query: 62 VISSIE----QKTSADGN-EKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQ 116
+ + E Q+ SA N EK++E + EK+++ELE++ + + ++
Sbjct: 824 ITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESM---------KAKLSSTQQSL 874
Query: 117 YESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEK 152
E + ++ + ++L EV ++ A + SEK
Sbjct: 875 AEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK 910
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 29.3 bits (64), Expect = 3.3
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 50 KNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVL--SLLDNY 107
++++ SW+ +EQ SA +KK Y E++ KE +A+ ++ ++ D
Sbjct: 161 RDLISRLHDSWKFAGELEQALSAVATQKK--KADRYIEELTKERDALSLELYRNTITDEE 218
Query: 108 LIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKE 163
L + ++ Q E K + + E+ +RA ++ ++ +EA + KE
Sbjct: 219 LKEKNAKLQ-EKLQLVESEKSEIQLNVKELKRKLERAKLLLPQQQLQAEADHLGKE 273
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 29.3 bits (64), Expect = 3.3
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 50 KNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVL--SLLDNY 107
++++ SW+ +EQ SA +KK Y E++ KE +A+ ++ ++ D
Sbjct: 161 RDLISRLHDSWKFAGELEQALSAVATQKK--KADRYIEELTKERDALSLELYRNTITDEE 218
Query: 108 LIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKE 163
L + ++ Q E K + + E+ +RA ++ ++ +EA + KE
Sbjct: 219 LKEKNAKLQ-EKLQLVESEKSEIQLNVKELKRKLERAKLLLPQQQLQAEADHLGKE 273
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 29.3 bits (64), Expect = 3.3
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 50 KNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVL--SLLDNY 107
++++ SW+ +EQ SA +KK Y E++ KE +A+ ++ ++ D
Sbjct: 149 RDLISRLHDSWKFAGELEQALSAVATQKK--KADRYIEELTKERDALSLELYRNTITDEE 206
Query: 108 LIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKE 163
L + ++ Q E K + + E+ +RA ++ ++ +EA + KE
Sbjct: 207 LKEKNAKLQ-EKLQLVESEKSEIQLNVKELKRKLERAKLLLPQQQLQAEADHLGKE 261
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 29.3 bits (64), Expect = 3.3
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 50 KNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVL--SLLDNY 107
++++ SW+ +EQ SA +KK Y E++ KE +A+ ++ ++ D
Sbjct: 222 RDLISRLHDSWKFAGELEQALSAVATQKK--KADRYIEELTKERDALSLELYRNTITDEE 279
Query: 108 LIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKE 163
L + ++ Q E K + + E+ +RA ++ ++ +EA + KE
Sbjct: 280 LKEKNAKLQ-EKLQLVESEKSEIQLNVKELKRKLERAKLLLPQQQLQAEADHLGKE 334
>gi|114520609 neural precursor cell expressed, developmentally
down-regulated 4 isoform 1 [Homo sapiens]
Length = 900
Score = 29.3 bits (64), Expect = 3.3
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 14 AEQAERYD------DMAAAMKNVTELNEPLS-----NEERNLLSVAYKNVVGARRSSWRV 62
AEQAE + D A ++ + EP E +++L Y +RR+ W+
Sbjct: 162 AEQAEELEPGWVVLDQPDAACHLQQQQEPSPLPPGWEERQDILGRTYYVNHESRRTQWKR 221
Query: 63 ISSIEQKTSADGNEKKIEMVRAY--REKIEKELEAVCQDVLSLLDNY-LIKNCSETQYES 119
+ + T A+ +++ RA+ R +I +E E+V D +N+ +I+ T Y +
Sbjct: 222 PTPQDNLTDAENGNIQLQAQRAFTTRRQISEETESV--DNRESSENWEIIREDEATMYSN 279
Query: 120 KVF 122
+ F
Sbjct: 280 QAF 282
>gi|13129074 proline rich Gla (G-carboxyglutamic acid) 4
(transmembrane) [Homo sapiens]
Length = 226
Score = 29.3 bits (64), Expect = 3.3
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 15/158 (9%)
Query: 32 ELNEPLSN--EERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKI 89
E NE L N E R + K + + W+ S+ T +DGN +KI+++ I
Sbjct: 68 ECNEELCNYEEAREIFVDEDKTI-----AFWQEYSAKGPTTKSDGNREKIDVMGLLTGLI 122
Query: 90 EKELEAVCQDVLSLLDNYL-IKNCSETQYE-SKVFYLKMK---GDYYRYLAEVATGEKRA 144
+ V + LL YL I C+ Q+ S Y + + +R E A
Sbjct: 123 AAGVFLV---IFGLLGYYLCITKCNRLQHPCSSAVYERGRHTPSIIFRRPEEAALSPLPP 179
Query: 145 TVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVF 182
+V ++ +Y +A ++++H P G + VF
Sbjct: 180 SVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVF 217
>gi|110347568 centrosomal protein 152kDa [Homo sapiens]
Length = 1654
Score = 29.3 bits (64), Expect = 3.3
Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 64 SSIEQKTSADGNEKKIEMVRAYREK------IEKELEAVCQDVLSLLDNYL-IKNCSETQ 116
S +Q T++D KK + +K +E+E + + + L+ L +K+C
Sbjct: 793 SQTDQVTTSDVISKKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENI- 851
Query: 117 YESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEIS 161
+K + ++ + R+L E+ + +V++ +K + E HE+S
Sbjct: 852 --TKQVEIAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVS 894
>gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo
sapiens]
Length = 321
Score = 28.9 bits (63), Expect = 4.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 53 VGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKE 92
VGARR W+ + +K +A G EK + +R EK K+
Sbjct: 206 VGARRRGWKKLRRRGKKAAAAGGEKAGKKLRQQGEKGRKK 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.127 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,267,770
Number of Sequences: 37866
Number of extensions: 319201
Number of successful extensions: 942
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 81
length of query: 247
length of database: 18,247,518
effective HSP length: 100
effective length of query: 147
effective length of database: 14,460,918
effective search space: 2125754946
effective search space used: 2125754946
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.