Guide to the Human Genome
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Name: ATP2C1 Sequence: fasta or formatted (949aa) NCBI GI: 48762689
Description:

calcium-transporting ATPase 2C1 isoform 1d

Referenced in:

Sodium, Potassium, and Calcium Membrane ATPases

Other entries for this name:
alt prot [919aa] calcium-transporting ATPase 2C1 isoform 1a
alt prot [888aa] calcium-transporting ATPase 2C1 isoform 1c
alt prot [939aa] calcium-transporting ATPase 2C1 isoform 1b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         65           2
 C cysteine            2.2         21           2
 D aspartate           4.6         44           3
 E glutamate           5.9         56           2
 F phenylalanine       3.9         37           2
 G glycine             6.7         64           1
 H histidine           1.4         13           1
 I isoleucine          7.5         71           3
 K lysine              6.0         57           2
 L leucine            10.0         95           3
 M methionine          3.5         33           2
 N asparagine          3.2         30           2
 P proline             4.0         38           2
 Q glutamine           4.5         43           3
 R arginine            3.7         35           2
 S serine              7.6         72           3
 T threonine           6.3         60           2
 V valine              9.5         90           2
 W tryptophan          0.9          9           1
 Y tyrosine            1.7         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium-transporting ATPase 2C1 isoform 1d 
ATP2C1                0.986   calcium-transporting ATPase 2C1 isoform 1b 
ATP2C1                0.965   calcium-transporting ATPase 2C1 isoform 1a 
ATP2C1                0.923   calcium-transporting ATPase 2C1 isoform 1c 
ATP2C2                0.630   ATPase, Ca++ transporting, type 2C, member 2 
ATP2A3                0.250   ATPase, Ca++ transporting, ubiquitous isoform a [Hom...
ATP2A3                0.250   ATPase, Ca++ transporting, ubiquitous isoform c [Hom...
ATP2A3                0.250   ATPase, Ca++ transporting, ubiquitous isoform f [Hom...
ATP2A3                0.250   ATPase, Ca++ transporting, ubiquitous isoform c [Hom...
ATP2A3                0.250   ATPase, Ca++ transporting, ubiquitous isoform b [Hom...
ATP2A3                0.250   ATPase, Ca++ transporting, ubiquitous isoform d [Hom...
ATP2A3                0.250   ATPase, Ca++ transporting, ubiquitous isoform e [Hom...
ATP2A2                0.247   ATPase, Ca++ transporting, slow twitch 2 isoform 1 [...
ATP2A2                0.247   ATPase, Ca++ transporting, slow twitch 2 isoform 2 [H...
ATP2A1                0.237   ATPase, Ca++ transporting, fast twitch 1 isoform b [...
ATP2A1                0.237   ATPase, Ca++ transporting, fast twitch 1 isoform a [...
ATP2A2                0.227   ATPase, Ca++ transporting, slow twitch 2 isoform 3 ...
ATP1A3                0.191   Na+/K+ -ATPase alpha 3 subunit 
ATP1A2                0.191   Na+/K+ -ATPase alpha 2 subunit proprotein 
ATP1A1                0.189   Na+/K+ -ATPase alpha 1 subunit isoform c 
ATP1A1                0.189   Na+/K+ -ATPase alpha 1 subunit isoform d 
ATP1A1                0.189   Na+/K+ -ATPase alpha 1 subunit isoform a 
ATP1A4                0.184   Na+/K+ -ATPase alpha 4 subunit isoform 1 
ATP4A                 0.181   hydrogen/potassium-exchanging ATPase 4A 
ATP12A                0.164   hydrogen/potassium-exchanging ATPase 12A 
ATP2B3                0.150   plasma membrane calcium ATPase 3 isoform 3b 
ATP2B3                0.150   plasma membrane calcium ATPase 3 isoform 3a 
ATP2B2                0.146   plasma membrane calcium ATPase 2 isoform 2 
ATP2B4                0.145   plasma membrane calcium ATPase 4 isoform 4a 
ATP2B4                0.145   plasma membrane calcium ATPase 4 isoform 4b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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