Guide to the Human Genome
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Name: TEKT5 Sequence: fasta or formatted (485aa) NCBI GI: 21389569
Description:

tektin 5

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         25           2
 C cysteine            4.1         20           2
 D aspartate           6.0         29           2
 E glutamate           7.6         37           2
 F phenylalanine       2.9         14           2
 G glycine             2.9         14           1
 H histidine           2.1         10           1
 I isoleucine          4.7         23           1
 K lysine              5.6         27           2
 L leucine            12.4         60           2
 M methionine          2.9         14           1
 N asparagine          4.9         24           1
 P proline             3.7         18           2
 Q glutamine           7.0         34           1
 R arginine            7.8         38           2
 S serine              5.6         27           2
 T threonine           7.4         36           2
 V valine              3.9         19           1
 W tryptophan          1.2          6           1
 Y tyrosine            2.1         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tektin 5 
TEKT3                 0.447   tektin 3 
TEKT1                 0.244   tektin 1 
TEKT4                 0.211   tektin 4 
MAFIP                 0.173   PREDICTED: MAFF interacting protein 
TEKT2                 0.144   tektin 2 
LOC727768             0.104   PREDICTED: similar to tektin 4 
LOC100132288          0.054   hypothetical protein LOC100132288 
LOC652794             0.031   PREDICTED: similar to tektin 4 
MAFIP                 0.030   PREDICTED: MAFF interacting protein 
PMFBP1                0.030   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.030   polyamine modulated factor 1 binding protein 1 isof...
MYH9                  0.023   myosin, heavy polypeptide 9, non-muscle 
DSP                   0.022   desmoplakin isoform I 
EEA1                  0.021   early endosome antigen 1, 162kD 
ROCK1                 0.019   Rho-associated, coiled-coil containing protein kinase...
MYH8                  0.018   myosin, heavy chain 8, skeletal muscle, perinatal [...
CENPF                 0.017   centromere protein F 
LCA5L                 0.017   Leber congenital amaurosis 5-like 
MYH4                  0.016   myosin, heavy polypeptide 4, skeletal muscle 
IFT74                 0.015   coiled-coil domain containing 2 isoform a 
IFT74                 0.015   coiled-coil domain containing 2 isoform a 
IFT74                 0.015   coiled-coil domain containing 2 isoform a 
SMC3                  0.015   structural maintenance of chromosomes 3 
MYH2                  0.015   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.015   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH6                  0.013   myosin heavy chain 6 
CEP110                0.013   centrosomal protein 110kDa 
USO1                  0.013   USO1 homolog, vesicle docking protein 
C14orf145             0.013   hypothetical protein LOC145508 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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