Guide to the Human Genome
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Name: GDPD2 Sequence: fasta or formatted (539aa) NCBI GI: 21361649
Description:

osteoblast differentiation promoting factor protein

Referenced in:

Bone and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         37           3
 C cysteine            2.8         15           2
 D aspartate           3.7         20           1
 E glutamate           4.1         22           2
 F phenylalanine       4.8         26           2
 G glycine             4.6         25           2
 H histidine           3.0         16           1
 I isoleucine          4.3         23           2
 K lysine              2.8         15           2
 L leucine            17.3         93           5
 M methionine          3.0         16           2
 N asparagine          3.5         19           2
 P proline             5.8         31           2
 Q glutamine           3.9         21           2
 R arginine            6.5         35           2
 S serine              5.4         29           2
 T threonine           5.6         30           2
 V valine              6.7         36           2
 W tryptophan          3.5         19           1
 Y tyrosine            2.0         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   osteoblast differentiation promoting factor protein ... 
GDPD5                 0.379   glycerophosphodiester phosphodiesterase domain cont...
GDPD4                 0.274   glycerophosphodiester phosphodiesterase domain conta...
GDE1                  0.047   glycerophosphodiester phosphodiesterase 1 
RP5-1022P6.2          0.017   hypothetical protein LOC56261 
GDPD1                 0.011   glycerophosphodiester phosphodiesterase domain conta...
GPR55                 0.006   G protein-coupled receptor 55 
C2orf21               0.006   chromosome 2 open reading frame 21 isoform 1 
MUC16                 0.006   mucin 16 
OTUD7B                0.006   zinc finger protein Cezanne 
HR                    0.006   hairless protein isoform a 
HR                    0.006   hairless protein isoform b 
OR56A5                0.005   olfactory receptor, family 56, subfamily A, member ...
OR56A5                0.005   PREDICTED: olfactory receptor, family 56, subfamily...
OR56A5                0.005   PREDICTED: olfactory receptor, family 56, subfamily ...
OR56A5                0.005   PREDICTED: olfactory receptor, family 56, subfamily...
GDPD3                 0.005   glycerophosphodiester phosphodiesterase domain cont...
MLL5                  0.005   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.005   myeloid/lymphoid or mixed-lineage leukemia 5 
OTOP1                 0.005   otopetrin 1 
OR56A1                0.005   olfactory receptor, family 56, subfamily A, member 1...
LOC100293050          0.004   PREDICTED: hypothetical protein 
LOC100289982          0.004   PREDICTED: hypothetical protein XP_002347304 
LOC100288634          0.004   PREDICTED: hypothetical protein XP_002343172 
BZRPL1                0.004   benzodiazapine receptor (peripheral)-like 1 
BZRPL1                0.004   benzodiazapine receptor (peripheral)-like 1 
TMX2                  0.004   thioredoxin domain containing 14 isoform 1 
ZDHHC12               0.004   zinc finger, DHHC domain containing 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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