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Search of human proteins with 113429979
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113429979 PREDICTED: similar to EEF1A1 protein [Homo
sapiens]
(105 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217153 PREDICTED: similar to EEF1A1 protein [Homo sapiens] 221 1e-58
gi|113430525 PREDICTED: similar to EEF1A1 protein [Homo sapiens] 221 1e-58
gi|113429979 PREDICTED: similar to EEF1A1 protein [Homo sapiens] 221 1e-58
gi|4503471 eukaryotic translation elongation factor 1 alpha 1 [H... 125 7e-30
gi|239757543 PREDICTED: similar to eukaryotic translation elonga... 124 2e-29
gi|4503475 eukaryotic translation elongation factor 1 alpha 2 [H... 124 2e-29
gi|223555963 Hsp70 subfamily B suppressor 1-like protein isoform... 67 2e-12
gi|5729864 Hsp70 subfamily B suppressor 1-like protein isoform 1... 67 2e-12
gi|194018522 G1 to S phase transition 1 isoform 3 [Homo sapiens] 58 1e-09
gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens] 58 1e-09
gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens] 58 1e-09
gi|46094014 peptide chain release factor 3 [Homo sapiens] 57 3e-09
gi|34147630 Tu translation elongation factor, mitochondrial prec... 30 0.41
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 28 1.2
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 28 1.5
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 28 1.5
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 28 1.5
gi|7262393 ATP-binding cassette, sub-family D (ALD), member 1 [H... 27 3.4
gi|92091572 dedicator of cytokinesis 4 [Homo sapiens] 27 3.4
gi|24119166 retinoblastoma binding protein 9 [Homo sapiens] 26 5.9
gi|9945308 ATP-binding cassette, sub-family D, member 2 [Homo sa... 26 7.7
>gi|169217153 PREDICTED: similar to EEF1A1 protein [Homo sapiens]
Length = 105
Score = 221 bits (563), Expect = 1e-58
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE 60
MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE
Sbjct: 1 MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE 60
Query: 61 CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL 105
CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL
Sbjct: 61 CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL 105
>gi|113430525 PREDICTED: similar to EEF1A1 protein [Homo sapiens]
Length = 105
Score = 221 bits (563), Expect = 1e-58
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE 60
MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE
Sbjct: 1 MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE 60
Query: 61 CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL 105
CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL
Sbjct: 61 CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL 105
>gi|113429979 PREDICTED: similar to EEF1A1 protein [Homo sapiens]
Length = 105
Score = 221 bits (563), Expect = 1e-58
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE 60
MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE
Sbjct: 1 MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE 60
Query: 61 CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL 105
CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL
Sbjct: 61 CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL 105
>gi|4503471 eukaryotic translation elongation factor 1 alpha 1
[Homo sapiens]
Length = 462
Score = 125 bits (314), Expect = 7e-30
Identities = 63/90 (70%), Positives = 70/90 (77%), Gaps = 6/90 (6%)
Query: 1 MGKEKAHISITVIGHQDSGKPTTNGHLV------DKRTIENFEKDAAEMGKGFFKYAWVL 54
MGKEK HI+I VIGH DSGK TT GHL+ DKRTIE FEK+AAEMGKG FKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 55 HKLKAECECGVTIDISPWKFETSKQWTRLL 84
KLKAE E G+TIDIS WKFETSK + ++
Sbjct: 61 DKLKAERERGITIDISLWKFETSKYYVTII 90
>gi|239757543 PREDICTED: similar to eukaryotic translation
elongation factor 1 alpha 2 [Homo sapiens]
Length = 444
Score = 124 bits (310), Expect = 2e-29
Identities = 62/90 (68%), Positives = 70/90 (77%), Gaps = 6/90 (6%)
Query: 1 MGKEKAHISITVIGHQDSGKPTTNGHLV------DKRTIENFEKDAAEMGKGFFKYAWVL 54
MGKEK HI+I VIGH DSGK TT GHL+ DKRTIE FEK+AAEMGKG FKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 55 HKLKAECECGVTIDISPWKFETSKQWTRLL 84
KLKAE E G+TIDIS WKFET+K + ++
Sbjct: 61 DKLKAERERGITIDISLWKFETTKYYITII 90
>gi|4503475 eukaryotic translation elongation factor 1 alpha 2
[Homo sapiens]
Length = 463
Score = 124 bits (310), Expect = 2e-29
Identities = 62/90 (68%), Positives = 70/90 (77%), Gaps = 6/90 (6%)
Query: 1 MGKEKAHISITVIGHQDSGKPTTNGHLV------DKRTIENFEKDAAEMGKGFFKYAWVL 54
MGKEK HI+I VIGH DSGK TT GHL+ DKRTIE FEK+AAEMGKG FKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 55 HKLKAECECGVTIDISPWKFETSKQWTRLL 84
KLKAE E G+TIDIS WKFET+K + ++
Sbjct: 61 DKLKAERERGITIDISLWKFETTKYYITII 90
>gi|223555963 Hsp70 subfamily B suppressor 1-like protein isoform 2
[Homo sapiens]
Length = 642
Score = 67.4 bits (163), Expect = 2e-12
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 5 KAHISITVIGHQDSGKPTTNGHL------VDKRTIENFEKDAAEMGKGFFKYAWVLHKLK 58
K +++ VIGH D+GK T GH+ ++KRT+ +E+++ + GK F YAWVL +
Sbjct: 216 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETG 275
Query: 59 AECECGVTIDISPWKFETSKQWTRLL 84
E E GVT+D+ KFET+ + L+
Sbjct: 276 EERERGVTMDVGMTKFETTTKVITLM 301
>gi|5729864 Hsp70 subfamily B suppressor 1-like protein isoform 1
[Homo sapiens]
Length = 684
Score = 67.4 bits (163), Expect = 2e-12
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 5 KAHISITVIGHQDSGKPTTNGHL------VDKRTIENFEKDAAEMGKGFFKYAWVLHKLK 58
K +++ VIGH D+GK T GH+ ++KRT+ +E+++ + GK F YAWVL +
Sbjct: 258 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETG 317
Query: 59 AECECGVTIDISPWKFETSKQWTRLL 84
E E GVT+D+ KFET+ + L+
Sbjct: 318 EERERGVTMDVGMTKFETTTKVITLM 343
>gi|194018522 G1 to S phase transition 1 isoform 3 [Homo sapiens]
Length = 499
Score = 58.2 bits (139), Expect = 1e-09
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 4 EKAHISITVIGHQDSGKPTTNGHL------VDKRTIENFEKDAAEMGKGFFKYAWVLHKL 57
+K H+++ IGH D+GK T G + VDKRT+E +E++A E + + +W L
Sbjct: 71 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 130
Query: 58 KAECECGVTIDISPWKFETSKQWTRLL 84
+ E + G T+++ FET K+ +L
Sbjct: 131 QEERDKGKTVEVGRAYFETEKKHFTIL 157
>gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens]
Length = 636
Score = 58.2 bits (139), Expect = 1e-09
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 4 EKAHISITVIGHQDSGKPTTNGHL------VDKRTIENFEKDAAEMGKGFFKYAWVLHKL 57
+K H+++ IGH D+GK T G + VDKRT+E +E++A E + + +W L
Sbjct: 208 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 267
Query: 58 KAECECGVTIDISPWKFETSKQWTRLL 84
+ E + G T+++ FET K+ +L
Sbjct: 268 QEERDKGKTVEVGRAYFETEKKHFTIL 294
>gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens]
Length = 637
Score = 58.2 bits (139), Expect = 1e-09
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 4 EKAHISITVIGHQDSGKPTTNGHL------VDKRTIENFEKDAAEMGKGFFKYAWVLHKL 57
+K H+++ IGH D+GK T G + VDKRT+E +E++A E + + +W L
Sbjct: 209 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 268
Query: 58 KAECECGVTIDISPWKFETSKQWTRLL 84
+ E + G T+++ FET K+ +L
Sbjct: 269 QEERDKGKTVEVGRAYFETEKKHFTIL 295
>gi|46094014 peptide chain release factor 3 [Homo sapiens]
Length = 628
Score = 57.0 bits (136), Expect = 3e-09
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 4 EKAHISITVIGHQDSGKPTTNGHL------VDKRTIENFEKDAAEMGKGFFKYAWVLHKL 57
+K H+++ IGH D+GK T G + VDKRT+E +E++A E + + +W L
Sbjct: 200 KKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 259
Query: 58 KAECECGVTIDISPWKFETSKQWTRLL 84
+ E + G T+++ FET ++ +L
Sbjct: 260 QEERDKGKTVEVGRAYFETERKHFTIL 286
>gi|34147630 Tu translation elongation factor, mitochondrial
precursor [Homo sapiens]
Length = 455
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 3 KEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAECE 62
++K H+++ IGH D GK T + K AE G FK + E
Sbjct: 56 RDKPHVNVGTIGHVDHGKTTLTAAIT---------KILAEGGGAKFKKYEEIDNAPEERA 106
Query: 63 CGVTIDISPWKFETS 77
G+TI+ + ++ T+
Sbjct: 107 RGITINAAHVEYSTA 121
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 9 SITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAE 42
+IT +GH+ GK NG + D+R NF+ + E
Sbjct: 430 TITALGHE--GKQLVNGEVSDERVAPNFKTEPIE 461
>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform 4
[Homo sapiens]
Length = 3321
Score = 28.1 bits (61), Expect = 1.5
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 33 IENFEKDAAEMGKGFFKYAWVLHKLKAECECGVTIDISPWKFETSKQWTRLLLELTRSPN 92
++N + D + + K+ + ++L EC VT ++ E + +W LL E+
Sbjct: 1697 LQNLQDDLEKQERSLQKFGSITNQLLKECHPPVTETLTNTLKEVNMRWNNLLEEIAEQLQ 1756
Query: 93 IPRKLRSL 100
+ L L
Sbjct: 1757 SSKALLQL 1764
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 28.1 bits (61), Expect = 1.5
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 33 IENFEKDAAEMGKGFFKYAWVLHKLKAECECGVTIDISPWKFETSKQWTRLLLELTRSPN 92
++N + D + + K+ + ++L EC VT ++ E + +W LL E+
Sbjct: 7102 LQNLQDDLEKQERSLQKFGSITNQLLKECHPPVTETLTNTLKEVNMRWNNLLEEIAEQLQ 7161
Query: 93 IPRKLRSL 100
+ L L
Sbjct: 7162 SSKALLQL 7169
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 28.1 bits (61), Expect = 1.5
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 33 IENFEKDAAEMGKGFFKYAWVLHKLKAECECGVTIDISPWKFETSKQWTRLLLELTRSPN 92
++N + D + + K+ + ++L EC VT ++ E + +W LL E+
Sbjct: 7173 LQNLQDDLEKQERSLQKFGSITNQLLKECHPPVTETLTNTLKEVNMRWNNLLEEIAEQLQ 7232
Query: 93 IPRKLRSL 100
+ L L
Sbjct: 7233 SSKALLQL 7240
>gi|7262393 ATP-binding cassette, sub-family D (ALD), member 1 [Homo
sapiens]
Length = 745
Score = 26.9 bits (58), Expect = 3.4
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 30 KRTIENFEKDAAEMGKGFF---KYAWVLHKLKAECECGVTIDISPWKFETSKQWTRLLLE 86
K + EK M + F+ KYA L EC V+ID+ F+ +K LL
Sbjct: 602 KDVLSGGEKQRIGMARMFYHRPKYA-----LLDECTSAVSIDVEGKIFQAAKDAGIALLS 656
Query: 87 LTRSPNI 93
+T P++
Sbjct: 657 ITHRPSL 663
>gi|92091572 dedicator of cytokinesis 4 [Homo sapiens]
Length = 1966
Score = 26.9 bits (58), Expect = 3.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 3 KEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFE 37
+ K H+ +T+I + D GK NG ++ ++ E +E
Sbjct: 1250 QRKEHLHLTIIQNFDRGKCWENGIILCRKIAEQYE 1284
>gi|24119166 retinoblastoma binding protein 9 [Homo sapiens]
Length = 186
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 39 DAAEMGKGFFKYAWVLHKLKAEC----ECGVTID-ISPWK 73
D E G+F W K+KA C + G T D PWK
Sbjct: 105 DENERASGYFTRPWQWEKIKANCPYIVQFGSTDDPFLPWK 144
>gi|9945308 ATP-binding cassette, sub-family D, member 2 [Homo
sapiens]
Length = 740
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 30 KRTIENFEKDAAEMGKGFF---KYAWVLHKLKAECECGVTIDISPWKFETSKQWTRLLLE 86
K + EK M + F+ KYA L EC V+ID+ F+ +K LL
Sbjct: 606 KDVLSGGEKQRMGMARMFYHKPKYA-----LLDECTSAVSIDVEGKIFQAAKGAGISLLS 660
Query: 87 LTRSPNI 93
+T P++
Sbjct: 661 ITHRPSL 667
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,118,745
Number of Sequences: 37866
Number of extensions: 151540
Number of successful extensions: 300
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 21
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.