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Search of human proteins with 21361521
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361521 calcium homeostasis modulator 2 [Homo sapiens]
(323 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361521 calcium homeostasis modulator 2 [Homo sapiens] 654 0.0
gi|62988336 hypothetical protein LOC441168 [Homo sapiens] 139 3e-33
gi|193211395 calcium homeostasis modulator 3 [Homo sapiens] 130 2e-30
gi|194440685 calcium homeostasis modulator 1 [Homo sapiens] 125 7e-29
gi|24308454 hypothetical protein LOC254228 [Homo sapiens] 122 6e-28
gi|23308563 hypothetical protein LOC221301 [Homo sapiens] 67 2e-11
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens] 30 2.2
gi|207452735 epiplakin 1 [Homo sapiens] 30 2.2
gi|21361583 ornithine decarboxylase antizyme inhibitor [Homo sap... 30 3.8
gi|22538418 ornithine decarboxylase antizyme inhibitor [Homo sap... 30 3.8
gi|237512982 voltage-gated sodium channel type V alpha isoform f... 29 4.9
gi|237512980 voltage-gated sodium channel type V alpha isoform e... 29 4.9
gi|37622907 voltage-gated sodium channel type V alpha isoform a ... 29 4.9
gi|30089970 voltage-gated sodium channel type V alpha isoform b ... 29 4.9
gi|150417967 voltage-gated sodium channel type V alpha isoform c... 29 4.9
gi|239748090 PREDICTED: similar to sodium channel, voltage-gated... 29 4.9
gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens] 28 8.4
gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens] 28 8.4
gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens] 28 8.4
>gi|21361521 calcium homeostasis modulator 2 [Homo sapiens]
Length = 323
Score = 654 bits (1687), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MAALIAENFRFLSLFFKSKDVMIFNGLVALGTVGSQELFSVVAFHCPCSPARNYLYGLAA 60
MAALIAENFRFLSLFFKSKDVMIFNGLVALGTVGSQELFSVVAFHCPCSPARNYLYGLAA
Sbjct: 1 MAALIAENFRFLSLFFKSKDVMIFNGLVALGTVGSQELFSVVAFHCPCSPARNYLYGLAA 60
Query: 61 IGVPALVLFIIGIILNNHTWNLVAECQHRRTKNCSAAPTFLLLSSILGRAAVAPVTWSVI 120
IGVPALVLFIIGIILNNHTWNLVAECQHRRTKNCSAAPTFLLLSSILGRAAVAPVTWSVI
Sbjct: 61 IGVPALVLFIIGIILNNHTWNLVAECQHRRTKNCSAAPTFLLLSSILGRAAVAPVTWSVI 120
Query: 121 SLLRGEAYVCALSEFVDPSSLTAREEHFPSAHATEILARFPCKENPDNLSDFREEVSRRL 180
SLLRGEAYVCALSEFVDPSSLTAREEHFPSAHATEILARFPCKENPDNLSDFREEVSRRL
Sbjct: 121 SLLRGEAYVCALSEFVDPSSLTAREEHFPSAHATEILARFPCKENPDNLSDFREEVSRRL 180
Query: 181 RYESQLFGWLLIGVVAILVFLTKCLKHYCSPLSYRQEAYWAQYRANEDQLFQRTAEVHSR 240
RYESQLFGWLLIGVVAILVFLTKCLKHYCSPLSYRQEAYWAQYRANEDQLFQRTAEVHSR
Sbjct: 181 RYESQLFGWLLIGVVAILVFLTKCLKHYCSPLSYRQEAYWAQYRANEDQLFQRTAEVHSR 240
Query: 241 VLAANNVRRFFGFVALNKDDEELIANFPVEGTQPRPQWNAITGVYLYRENQGLPLYSRLH 300
VLAANNVRRFFGFVALNKDDEELIANFPVEGTQPRPQWNAITGVYLYRENQGLPLYSRLH
Sbjct: 241 VLAANNVRRFFGFVALNKDDEELIANFPVEGTQPRPQWNAITGVYLYRENQGLPLYSRLH 300
Query: 301 KWAQGLAGNGAAPDNVEMALLPS 323
KWAQGLAGNGAAPDNVEMALLPS
Sbjct: 301 KWAQGLAGNGAAPDNVEMALLPS 323
>gi|62988336 hypothetical protein LOC441168 [Homo sapiens]
Length = 315
Score = 139 bits (351), Expect = 3e-33
Identities = 99/299 (33%), Positives = 146/299 (48%), Gaps = 24/299 (8%)
Query: 7 ENFR-FLSLFFKSKDVMIFNGLVALGTVGSQELFSVVAFHCPCSPARNYLYGLAAIGVPA 65
E FR L L K + + GLV L T G + +FS VAF CPCS A N YGL + VPA
Sbjct: 2 EKFRAVLDLHVKHHSALGY-GLVTLLTAGGERIFSAVAFQCPCSAAWNLPYGLVFLLVPA 60
Query: 66 LVLFIIGIILNNHTWNLVAECQHRRTKNC-SAAPTFLLLSSILGRAAVAPVTWSVISLLR 124
L LF++G +L+ TW L+ C +C SA L+ + I AA+AP+TW ++LL
Sbjct: 61 LALFLLGYVLSARTWRLLTGCCSSARASCGSALRGSLVCTQISAAAALAPLTWVAVALLG 120
Query: 125 GEAYVCALSEFVDPSSLTAREEHFPSAHATEILARFPCKENPDNLSDFREEVSRRLRYES 184
G Y CA + ++ R + L PC N SD +++ + L+ +S
Sbjct: 121 GAFYECAAT---GSAAFAQRLCLGRNRSCAAELPLVPC--NQAKASDV-QDLLKDLKAQS 174
Query: 185 QLFGWLLIGVVAILVFLTKCLKHYCSPLSYRQEAYWAQYRANEDQLFQRTAEVHSRVLAA 244
Q+ GW+LI VV I++ + + SP+S+ Q +W Y E Q+ + A H+ LA
Sbjct: 175 QVLGWILIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQQILKSKATEHATELAK 234
Query: 245 NNVRRFFGFVALNKDDEELIANFPVE-GTQPRPQWNAITGVYLYRENQGLPLYSRLHKW 302
N++ FF + P E T +W I+ +Y + N YS LHK+
Sbjct: 235 ENIKCFFE------------GSHPKEYNTPSMKEWQQISSLYTF--NPKGQYYSMLHKY 279
>gi|193211395 calcium homeostasis modulator 3 [Homo sapiens]
Length = 344
Score = 130 bits (327), Expect = 2e-30
Identities = 88/252 (34%), Positives = 122/252 (48%), Gaps = 13/252 (5%)
Query: 7 ENFRFLSLFFKSKDVMIFNGLVALGTVGSQELFSVVAFHCPCSPARNYLYGLAAIGVPAL 66
+ FR L F+S + NG+ L + +L+S F+CPC N LYGL + P L
Sbjct: 2 DKFRMLFQHFQSSSESVMNGICLLLAAVTVKLYSSFDFNCPCLVHYNALYGLGLLLTPPL 61
Query: 67 VLFIIGIILNNHTWNLVAECQ----HRRTKNCSAAPTFLLLSSILGRAAVAPVTWSVISL 122
LF+ G++ N + +V E + HRR + SS+L RA AP+ W +++L
Sbjct: 62 ALFLCGLLANRQSVVMVEEWRRPAGHRRK---DPGIIRYMCSSVLQRALAAPLVWILLAL 118
Query: 123 LRGEAYVCALSEFVDPSSLTAREEHFPSAHATEILARFPCKENPDNL---SDFREEVSRR 179
L G+ +VCA S VDP PS LA+ PCKE D L S R+ VSR
Sbjct: 119 LDGKCFVCAFSSSVDPEKFLDFANMTPS-QVQLFLAKVPCKE--DELVRDSPARKAVSRY 175
Query: 180 LRYESQLFGWLLIGVVAILVFLTKCLKHYCSPLSYRQEAYWAQYRANEDQLFQRTAEVHS 239
LR SQ GW + ++ I FL +CL+ + Q YW+ Y E +LF T H+
Sbjct: 176 LRCLSQAIGWSVTLLLIIAAFLARCLRPCFDQTVFLQRRYWSNYVDLEQKLFDETCCEHA 235
Query: 240 RVLAANNVRRFF 251
R A V FF
Sbjct: 236 RDFAHRCVLHFF 247
>gi|194440685 calcium homeostasis modulator 1 [Homo sapiens]
Length = 346
Score = 125 bits (313), Expect = 7e-29
Identities = 79/263 (30%), Positives = 130/263 (49%), Gaps = 14/263 (5%)
Query: 7 ENFRFLSLFFKSKDVMIFNGLVALGTVGSQELFSVVAFHCPCSPARNYLYGLAAIGVPAL 66
+ FR + F +S NG+ + + S +++S F+CPC P N Y + P L
Sbjct: 3 DKFRMIFQFLQSNQESFMNGICGIMALASAQMYSAFDFNCPCLPGYNAAYSAGILLAPPL 62
Query: 67 VLFIIGIILNNHTWNLVAECQH---RRTKNCSAAPTFLLLSSILGRAAVAPVTWSVISLL 123
VLF++G+++NN+ L E + RR K+ A + S+ RA +APV W ++LL
Sbjct: 63 VLFLLGLVMNNNVSMLAEEWKRPLGRRAKD--PAVLRYMFCSMAQRALIAPVVWVAVTLL 120
Query: 124 RGEAYVCALSEFVDPSSL--TAREEHFPSAHATEILARFPCKENPDNLSDF---REEVSR 178
G+ ++CA V S+L + P+ +LAR PC E D D+ RE R
Sbjct: 121 DGKCFLCAFCTAVPVSALGNGSLAPGLPAPELARLLARVPCPEIYD--GDWLLAREVAVR 178
Query: 179 RLRYESQLFGWLLIGVVAILVFLTKCLKHYCSPLSYRQEAYWAQYRANEDQLFQRTAEVH 238
LR SQ GW + + +L F+ + ++ + ++ + YW+ Y E +LF T H
Sbjct: 179 YLRCISQALGWSFVLLTTLLAFVVRSVRPCFTQAAFLKSKYWSHYIDIERKLFDETCTEH 238
Query: 239 SRVLAANNVRRFFGFVALNKDDE 261
++ A +++F F A+N D E
Sbjct: 239 AKAFAKVCIQQF--FEAMNHDLE 259
>gi|24308454 hypothetical protein LOC254228 [Homo sapiens]
Length = 309
Score = 122 bits (305), Expect = 6e-28
Identities = 94/296 (31%), Positives = 137/296 (46%), Gaps = 19/296 (6%)
Query: 9 FRFLSLFFKSKDVMIFNGLVALGTVGSQELFSVVAFHCPCSPARNYLYGLAAIGVPALVL 68
F+ + FF ++ +I +AL TVGS+ LFSVVAF CPCS N YGL + PA VL
Sbjct: 4 FQGILKFFLNQKTVIGYSFMALLTVGSERLFSVVAFKCPCS-TENMTYGLVFLFAPAWVL 62
Query: 69 FIIGIILNNHTWNLVAECQHRRTK---NCSAAPTFLLLSSILGRAAVAPVTWSVISLLRG 125
I+G LNN +W L C K + F +L I + VAPV W ++LL G
Sbjct: 63 LILGFFLNNRSWRLFTGCCVNPRKIFPRGHSCRFFYVLGQITLSSLVAPVMWLSVALLNG 122
Query: 126 EAYVCALSEFVDPSSLTAREEHFPSAHATEILARFPCKENPDNLSDFREEVSRRLRYESQ 185
Y CA+S L + P E L + C + L EE+ L+ +SQ
Sbjct: 123 TFYECAMSGTRSSGLLELICKGKPK-ECWEELHKVSCGKT-SMLPTVNEELKLSLQAQSQ 180
Query: 186 LFGWLLIGVVAILVFLTKCLKHYCSPLSYRQEAYWAQYRANEDQLFQRTAEVHSRVLAAN 245
+ GW LI + LT C S +SY Q ++W Y E + + T ++ L+
Sbjct: 181 ILGWCLICSASFFSLLTTCYARCRSKVSYLQLSFWKTYAQKEKEQLENTFLDYANKLSER 240
Query: 246 NVRRFFGFVALNKDDEELIANFPVEGTQPRPQWNAITGVYLYRENQGLPLYSRLHK 301
N++ FF NK + FP+ W A + ++ + ++Q YS LH+
Sbjct: 241 NLKCFFE----NKRPDP----FPM---PTFAAWEAASELHSFHQSQ--QHYSTLHR 283
>gi|23308563 hypothetical protein LOC221301 [Homo sapiens]
Length = 128
Score = 67.0 bits (162), Expect = 2e-11
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 186 LFGWLLIGVVAILVFLTKCLKHYCSPLSYRQEAYWAQYRANEDQLFQRTAEVHSRVLAAN 245
+ GW+LI + I ++ C+ CSPL+ Q YW + NE +LF++ AE HSR+L +
Sbjct: 1 MLGWILITLATIAALVSCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMH 60
Query: 246 NVRRFFGFVALNKD 259
+++ FGF+ ++D
Sbjct: 61 RIKKLFGFIPGSED 74
>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
Length = 802
Score = 30.4 bits (67), Expect = 2.2
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 211 PLSYRQEAYWAQYRANEDQLFQRTAEVHSRVLAANNVRRFFGFVALNKDDEELIANFPVE 270
P YR +Y + +E L RT ++H ++ + + ++K+D +L
Sbjct: 310 PYQYRLHSYMLSRKISE--LRHRTIQLHREIVLMSK----YSNTEIHKEDLQLGIPPSFM 363
Query: 271 GTQPRP-----QWNAITGVYLYRENQGLP 294
QPR +W +TG YLY G P
Sbjct: 364 RFQPRQREEILEWEFLTGKYLYSAVDGQP 392
>gi|207452735 epiplakin 1 [Homo sapiens]
Length = 5090
Score = 30.4 bits (67), Expect = 2.2
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 271 GTQPRPQWNAITGVYLYRENQGLPLYSRLHKWAQGL--AGNGAA 312
GT PRPQ +I GVY+ Q +Y+ + QGL AG G A
Sbjct: 33 GTPPRPQARSIAGVYVEASGQAQSVYAAME---QGLLPAGLGQA 73
>gi|21361583 ornithine decarboxylase antizyme inhibitor [Homo
sapiens]
Length = 448
Score = 29.6 bits (65), Expect = 3.8
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 53 NYLYGLAAIGVPALVLFIIGIILNNHT-W-NLVAECQHRRTKNCSAAPTFLLLSSILG 108
NY+Y G A + +G I+ H+ W N+VA+ + T C++AP L + + LG
Sbjct: 27 NYVYEHTLTGKNAFFVGDLGKIVKKHSQWQNVVAQIKPFYTVKCNSAPAVLEILAALG 84
>gi|22538418 ornithine decarboxylase antizyme inhibitor [Homo
sapiens]
Length = 448
Score = 29.6 bits (65), Expect = 3.8
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 53 NYLYGLAAIGVPALVLFIIGIILNNHT-W-NLVAECQHRRTKNCSAAPTFLLLSSILG 108
NY+Y G A + +G I+ H+ W N+VA+ + T C++AP L + + LG
Sbjct: 27 NYVYEHTLTGKNAFFVGDLGKIVKKHSQWQNVVAQIKPFYTVKCNSAPAVLEILAALG 84
>gi|237512982 voltage-gated sodium channel type V alpha isoform f
[Homo sapiens]
Length = 1962
Score = 29.3 bits (64), Expect = 4.9
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 32/121 (26%)
Query: 186 LFGWLLIGVVAILVFLTK---CL----------------KHYCSPLSYRQEAYWAQYRAN 226
L WL+ ++ + +F K C+ K C L+ E YW + + N
Sbjct: 1288 LIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNNKSQCESLNLTGELYWTKVKVN 1347
Query: 227 EDQLFQRTAEVHSRVLAANNVRRFFGFVALNKDDEELIANFPVEGTQPRPQWNAITGVYL 286
D V + LA V F G++ + + A G + +PQW +Y+
Sbjct: 1348 FD-------NVGAGYLALLQVATFKGWMDI------MYAAVDSRGYEEQPQWEYNLYMYI 1394
Query: 287 Y 287
Y
Sbjct: 1395 Y 1395
>gi|237512980 voltage-gated sodium channel type V alpha isoform e
[Homo sapiens]
Length = 1983
Score = 29.3 bits (64), Expect = 4.9
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 32/121 (26%)
Query: 186 LFGWLLIGVVAILVFLTK---CL----------------KHYCSPLSYRQEAYWAQYRAN 226
L WL+ ++ + +F K C+ K C L+ E YW + + N
Sbjct: 1341 LIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNNKSQCESLNLTGELYWTKVKVN 1400
Query: 227 EDQLFQRTAEVHSRVLAANNVRRFFGFVALNKDDEELIANFPVEGTQPRPQWNAITGVYL 286
D V + LA V F G++ + + A G + +PQW +Y+
Sbjct: 1401 FD-------NVGAGYLALLQVATFKGWMDI------MYAAVDSRGYEEQPQWEYNLYMYI 1447
Query: 287 Y 287
Y
Sbjct: 1448 Y 1448
>gi|37622907 voltage-gated sodium channel type V alpha isoform a [Homo
sapiens]
Length = 2016
Score = 29.3 bits (64), Expect = 4.9
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 32/121 (26%)
Query: 186 LFGWLLIGVVAILVFLTK---CL----------------KHYCSPLSYRQEAYWAQYRAN 226
L WL+ ++ + +F K C+ K C L+ E YW + + N
Sbjct: 1342 LIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNNKSQCESLNLTGELYWTKVKVN 1401
Query: 227 EDQLFQRTAEVHSRVLAANNVRRFFGFVALNKDDEELIANFPVEGTQPRPQWNAITGVYL 286
D V + LA V F G++ + + A G + +PQW +Y+
Sbjct: 1402 FD-------NVGAGYLALLQVATFKGWMDI------MYAAVDSRGYEEQPQWEYNLYMYI 1448
Query: 287 Y 287
Y
Sbjct: 1449 Y 1449
>gi|30089970 voltage-gated sodium channel type V alpha isoform b [Homo
sapiens]
Length = 2015
Score = 29.3 bits (64), Expect = 4.9
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 32/121 (26%)
Query: 186 LFGWLLIGVVAILVFLTK---CL----------------KHYCSPLSYRQEAYWAQYRAN 226
L WL+ ++ + +F K C+ K C L+ E YW + + N
Sbjct: 1341 LIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNNKSQCESLNLTGELYWTKVKVN 1400
Query: 227 EDQLFQRTAEVHSRVLAANNVRRFFGFVALNKDDEELIANFPVEGTQPRPQWNAITGVYL 286
D V + LA V F G++ + + A G + +PQW +Y+
Sbjct: 1401 FD-------NVGAGYLALLQVATFKGWMDI------MYAAVDSRGYEEQPQWEYNLYMYI 1447
Query: 287 Y 287
Y
Sbjct: 1448 Y 1448
>gi|150417967 voltage-gated sodium channel type V alpha isoform c
[Homo sapiens]
Length = 2016
Score = 29.3 bits (64), Expect = 4.9
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 32/121 (26%)
Query: 186 LFGWLLIGVVAILVFLTK---CL----------------KHYCSPLSYRQEAYWAQYRAN 226
L WL+ ++ + +F K C+ K C L+ E YW + + N
Sbjct: 1342 LIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNNKSQCESLNLTGELYWTKVKVN 1401
Query: 227 EDQLFQRTAEVHSRVLAANNVRRFFGFVALNKDDEELIANFPVEGTQPRPQWNAITGVYL 286
D V + LA V F G++ + + A G + +PQW +Y+
Sbjct: 1402 FD-------NVGAGYLALLQVATFKGWMDI------MYAAVDSRGYEEQPQWEYNLYMYI 1448
Query: 287 Y 287
Y
Sbjct: 1449 Y 1449
>gi|239748090 PREDICTED: similar to sodium channel, voltage-gated,
type V, alpha (long QT syndrome 3) [Homo sapiens]
Length = 1637
Score = 29.3 bits (64), Expect = 4.9
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 32/121 (26%)
Query: 186 LFGWLLIGVVAILVFLTK---CL----------------KHYCSPLSYRQEAYWAQYRAN 226
L WL+ ++ + +F K C+ K C L+ E YW + + N
Sbjct: 951 LIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNNKSQCESLNLTGELYWTKVKVN 1010
Query: 227 EDQLFQRTAEVHSRVLAANNVRRFFGFVALNKDDEELIANFPVEGTQPRPQWNAITGVYL 286
D V + LA V F G++ + + A G + +PQW +Y+
Sbjct: 1011 FD-------NVGAGYLALLQVATFKGWMDI------MYAAVDSRGYEEQPQWEYNLYMYI 1057
Query: 287 Y 287
Y
Sbjct: 1058 Y 1058
>gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]
Length = 1179
Score = 28.5 bits (62), Expect = 8.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 39 FSVVAFHCPCSPARNYLYGLAAIGVPALVLFIIGIILNNHTWNLVAECQHR 89
FS +A SP++NY+ L+ I +LF+IG++ T + E + R
Sbjct: 1131 FSDLAMQVMTSPSKNYI--LSVISGSICILFLIGLMCGRITKRVTRELKDR 1179
>gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]
Length = 1192
Score = 28.5 bits (62), Expect = 8.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 39 FSVVAFHCPCSPARNYLYGLAAIGVPALVLFIIGIILNNHTWNLVAECQHR 89
FS +A SP++NY+ L+ I +LF+IG++ T + E + R
Sbjct: 1120 FSDLAMQVMTSPSKNYI--LSVISGSICILFLIGLMCGRITKRVTRELKDR 1168
>gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens]
Length = 1203
Score = 28.5 bits (62), Expect = 8.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 39 FSVVAFHCPCSPARNYLYGLAAIGVPALVLFIIGIILNNHTWNLVAECQHR 89
FS +A SP++NY+ L+ I +LF+IG++ T + E + R
Sbjct: 1131 FSDLAMQVMTSPSKNYI--LSVISGSICILFLIGLMCGRITKRVTRELKDR 1179
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,998,630
Number of Sequences: 37866
Number of extensions: 511243
Number of successful extensions: 1353
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1336
Number of HSP's gapped (non-prelim): 19
length of query: 323
length of database: 18,247,518
effective HSP length: 102
effective length of query: 221
effective length of database: 14,385,186
effective search space: 3179126106
effective search space used: 3179126106
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.