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Search of human proteins with 213417911
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|213417911 protein kinase, interferon-inducible double
stranded RNA dependent activator isoform 2 [Homo sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|213417911 protein kinase, interferon-inducible double strande... 617 e-177
gi|4505581 protein kinase, interferon-inducible double stranded ... 593 e-170
gi|213417919 protein kinase, interferon-inducible double strande... 585 e-167
gi|19743840 TAR RNA binding protein 2 isoform a [Homo sapiens] 265 4e-71
gi|19743838 TAR RNA binding protein 2 isoform b [Homo sapiens] 258 6e-69
gi|85068512 TAR RNA binding protein 2 isoform b [Homo sapiens] 258 6e-69
gi|7657625 staufen homolog 2 [Homo sapiens] 79 6e-15
gi|82659089 staufen isoform a [Homo sapiens] 74 2e-13
gi|82659087 staufen isoform b [Homo sapiens] 74 2e-13
gi|82659085 staufen isoform a [Homo sapiens] 74 2e-13
gi|82659083 staufen isoform a [Homo sapiens] 74 2e-13
gi|82659091 staufen isoform c [Homo sapiens] 69 5e-12
gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo sa... 55 6e-08
gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo sa... 52 5e-07
gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo sa... 52 5e-07
gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo sa... 51 1e-06
gi|38488720 DiGeorge syndrome critical region gene 8 [Homo sapiens] 42 5e-04
gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo... 38 0.013
gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo s... 38 0.013
gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo s... 38 0.013
gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo s... 38 0.013
gi|208431829 eukaryotic translation initiation factor 2-alpha ki... 37 0.016
gi|208431827 eukaryotic translation initiation factor 2-alpha ki... 37 0.016
gi|4506103 eukaryotic translation initiation factor 2-alpha kina... 37 0.016
gi|8922077 adenosine deaminase, RNA-specific, B2 [Homo sapiens] 36 0.037
gi|24234756 interleukin enhancer binding factor 3 isoform c [Hom... 35 0.062
gi|24234753 interleukin enhancer binding factor 3 isoform b [Hom... 35 0.062
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 35 0.062
gi|212549555 interleukin enhancer binding factor 3 isoform e [Ho... 34 0.14
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 34 0.14
>gi|213417911 protein kinase, interferon-inducible double stranded
RNA dependent activator isoform 2 [Homo sapiens]
Length = 302
Score = 617 bits (1590), Expect = e-177
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MQSTPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVT 60
MQSTPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVT
Sbjct: 1 MQSTPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVT 60
Query: 61 VGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSL 120
VGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSL
Sbjct: 61 VGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSL 120
Query: 121 QELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAK 180
QELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAK
Sbjct: 121 QELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAK 180
Query: 181 FSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKE 240
FSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKE
Sbjct: 181 FSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKE 240
Query: 241 QGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAE 300
QGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAE
Sbjct: 241 QGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAE 300
Query: 301 RK 302
RK
Sbjct: 301 RK 302
>gi|4505581 protein kinase, interferon-inducible double stranded RNA
dependent activator isoform 1 [Homo sapiens]
Length = 313
Score = 593 bits (1530), Expect = e-170
Identities = 293/295 (99%), Positives = 293/295 (99%)
Query: 8 GFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCT 67
G SLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCT
Sbjct: 19 GTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCT 78
Query: 68 GEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHH 127
GEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHH
Sbjct: 79 GEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHH 138
Query: 128 GWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPE 187
GWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPE
Sbjct: 139 GWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPE 198
Query: 188 NHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITY 247
NHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITY
Sbjct: 199 NHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITY 258
Query: 248 LDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 302
LDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK
Sbjct: 259 LDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 313
>gi|213417919 protein kinase, interferon-inducible double stranded
RNA dependent activator isoform 3 [Homo sapiens]
Length = 288
Score = 585 bits (1509), Expect = e-167
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 15 MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKK 74
MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKK
Sbjct: 1 MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKK 60
Query: 75 LAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEY 134
LAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEY
Sbjct: 61 LAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEY 120
Query: 135 TLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTN 194
TLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTN
Sbjct: 121 TLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTN 180
Query: 195 VVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELS 254
VVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELS
Sbjct: 181 VVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELS 240
Query: 255 ANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 302
ANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK
Sbjct: 241 ANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 288
>gi|19743840 TAR RNA binding protein 2 isoform a [Homo sapiens]
Length = 366
Score = 265 bits (677), Expect = 4e-71
Identities = 151/357 (42%), Positives = 202/357 (56%), Gaps = 57/357 (15%)
Query: 3 STPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVG 62
+T CG S+ +M+ A PGKTPI +L EYG + PVY+ +++ Q H P FTFRVTVG
Sbjct: 10 TTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVG 69
Query: 63 DITCTGEGTSKKLAKHRAAEAAINILKANA--------SICFAVPDPLMPD--------- 105
D +CTG+G SKK AKH+AAE A+ LK + S F+ D +P+
Sbjct: 70 DTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAA 129
Query: 106 --------------------PSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHK 145
P +++ NP+G+LQEL + GWRLPEYT++QE GPAH+
Sbjct: 130 AATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHR 189
Query: 146 REYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNI-----------SPENHIS--- 191
+E+T CR+E F+E G G SKK AKRNAA K L + + ++H S
Sbjct: 190 KEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGV 249
Query: 192 ---LTNVVGHSLGCTWHSLRNSPGEKINLLKR---SLLSIPNTDYIQLLSEIAKEQGFNI 245
L + GCTW SLRNS GEKI L+ L ++LSE+++EQ F++
Sbjct: 250 GSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHV 309
Query: 246 TYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 302
+YLDI+ELS +G QCL ELST P TVCHGS + A+ +AA ALQYLKI+A K
Sbjct: 310 SYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 366
>gi|19743838 TAR RNA binding protein 2 isoform b [Homo sapiens]
Length = 345
Score = 258 bits (658), Expect = 6e-69
Identities = 147/345 (42%), Positives = 195/345 (56%), Gaps = 57/345 (16%)
Query: 15 MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKK 74
M+ A PGKTPI +L EYG + PVY+ +++ Q H P FTFRVTVGD +CTG+G SKK
Sbjct: 1 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK 60
Query: 75 LAKHRAAEAAINILKANA--------SICFAVPDPLMPD--------------------- 105
AKH+AAE A+ LK + S F+ D +P+
Sbjct: 61 AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR 120
Query: 106 --------PSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF 157
P +++ NP+G+LQEL + GWRLPEYT++QE GPAH++E+T CR+E F
Sbjct: 121 SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF 180
Query: 158 METGKGASKKQAKRNAAEKFLAKFSNI-----------SPENHIS------LTNVVGHSL 200
+E G G SKK AKRNAA K L + + ++H S L +
Sbjct: 181 IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP 240
Query: 201 GCTWHSLRNSPGEKINLLKR---SLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELSANG 257
GCTW SLRNS GEKI L+ L ++LSE+++EQ F+++YLDI+ELS +G
Sbjct: 241 GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG 300
Query: 258 QYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 302
QCL ELST P TVCHGS + A+ +AA ALQYLKI+A K
Sbjct: 301 LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345
>gi|85068512 TAR RNA binding protein 2 isoform b [Homo sapiens]
Length = 345
Score = 258 bits (658), Expect = 6e-69
Identities = 147/345 (42%), Positives = 195/345 (56%), Gaps = 57/345 (16%)
Query: 15 MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKK 74
M+ A PGKTPI +L EYG + PVY+ +++ Q H P FTFRVTVGD +CTG+G SKK
Sbjct: 1 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKK 60
Query: 75 LAKHRAAEAAINILKANA--------SICFAVPDPLMPD--------------------- 105
AKH+AAE A+ LK + S F+ D +P+
Sbjct: 61 AAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTR 120
Query: 106 --------PSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF 157
P +++ NP+G+LQEL + GWRLPEYT++QE GPAH++E+T CR+E F
Sbjct: 121 SPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF 180
Query: 158 METGKGASKKQAKRNAAEKFLAKFSNI-----------SPENHIS------LTNVVGHSL 200
+E G G SKK AKRNAA K L + + ++H S L +
Sbjct: 181 IEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIGVGSRLDGLRNRGP 240
Query: 201 GCTWHSLRNSPGEKINLLKR---SLLSIPNTDYIQLLSEIAKEQGFNITYLDIDELSANG 257
GCTW SLRNS GEKI L+ L ++LSE+++EQ F+++YLDI+ELS +G
Sbjct: 241 GCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSG 300
Query: 258 QYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 302
QCL ELST P TVCHGS + A+ +AA ALQYLKI+A K
Sbjct: 301 LCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 345
>gi|7657625 staufen homolog 2 [Homo sapiens]
Length = 479
Score = 78.6 bits (192), Expect = 6e-15
Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 26/268 (9%)
Query: 22 KTPIQVLHEYGMKTKNIPV-YECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRA 80
K+ I ++ E +K +N+PV +E + H+ +F RV+VG+ + GEG SKKL+K RA
Sbjct: 174 KSEISLVFEIALK-RNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRA 232
Query: 81 AEAAINILKANASICFAVPDPLMPDP----SKQPK----------NQLNPIGSLQELAIH 126
A + LK P P++ P K+PK +NPI L ++
Sbjct: 233 ATTVLQELKK------LPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQA 286
Query: 127 HGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 186
+ P+Y L E G +RE+ ++ + + TG G +KK AK+NAAE L + +
Sbjct: 287 KKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKAS 346
Query: 187 ENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKE-QGFNI 245
N G + G W + E N + +L + Y ++ + K G +
Sbjct: 347 TNLQDQLEKTGENKG--WSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTL 404
Query: 246 TYLDIDELS-ANGQYQCLAELSTSPITV 272
YL +++ + + ++ S S T+
Sbjct: 405 GYLSPKDMNQPSSSFFSISPTSNSSATI 432
Score = 49.3 bits (116), Expect = 4e-06
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 55 FTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKN-- 112
F ++TVG+ GEG +++ A+H AA A+ L+ P P + P+N
Sbjct: 114 FYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNE------------PIPERSPQNGE 161
Query: 113 -----------QLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETG 161
+ I + E+A+ + + + +E GP H + + T + F G
Sbjct: 162 SGKDMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSVGEFSAEG 220
Query: 162 KGASKKQAKRNAAEKFLAKFSNISP 186
+G SKK +K+ AA L + + P
Sbjct: 221 EGNSKKLSKKRAATTVLQELKKLPP 245
>gi|82659089 staufen isoform a [Homo sapiens]
Length = 496
Score = 73.9 bits (180), Expect = 2e-13
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 22 KTPIQVLHEYGMKTKNIPV-YECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRA 80
K+ I + E +K +N+PV +E R H+ F +V+VG+ GEG SKK++K A
Sbjct: 102 KSEISQVFEIALK-RNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNA 160
Query: 81 AEAAINILK----------ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWR 130
A A + LK I + P S + +NPI L ++ +
Sbjct: 161 AIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEK 220
Query: 131 LPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFL 178
PEYTL E G +RE+ ++ + G G +KK AKRNAAE L
Sbjct: 221 EPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENML 268
Score = 55.8 bits (133), Expect = 4e-08
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 12 LGKMITAKPGK--TPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRV--TVGDITCT 67
LGK KP + +Q + Y M+ P R VP ++V +VG
Sbjct: 3 LGKKPMYKPVDPYSRMQSTYNYNMRGGAYP----PRYFYPFPVPPLLYQVELSVGGQQFN 58
Query: 68 GEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHH 127
G+G +++ AKH AA A+ IL+ +P+ L + + + LN Q I
Sbjct: 59 GKGKTRQAAKHDAAAKALRILQNEP-----LPERLEVNGRESEEENLNKSEISQVFEIAL 113
Query: 128 GWRLP-EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 186
LP + +++E GP H + + T + F+ G+G SKK +K+NAA L + + P
Sbjct: 114 KRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPP 173
Score = 42.7 bits (99), Expect = 4e-04
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 22/249 (8%)
Query: 55 FTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVP--DPLMPDPSKQPKN 112
F +V VG+ T G GT+KK+AK AAE + IL F VP P P + K
Sbjct: 238 FVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG------FKVPQAQPTKPALKSEEKT 291
Query: 113 QLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKG-----ASKK 167
+ G +++ E E G ++K + + L S + G
Sbjct: 292 PIKKPGDGRKVTFF------EPGSGDENGTSNKEDEFRMPYL-SHQQLPAGILPMVPEVA 344
Query: 168 QAKRNAAEKFLAKFSNISPE-NHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIP 226
QA + F+ +P ++T ++ L S K N+ + P
Sbjct: 345 QAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGP 404
Query: 227 NTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSD 286
T + L +++ QGF + Y D + + N ++ L S+ P + HG G +
Sbjct: 405 LTRPSEQLDYLSRVQGFQVEYKDFPKNNKN-EFVSLINCSSQPPLISHGIGKDVESCHDM 463
Query: 287 AAHNALQYL 295
AA N L+ L
Sbjct: 464 AALNILKLL 472
>gi|82659087 staufen isoform b [Homo sapiens]
Length = 577
Score = 73.9 bits (180), Expect = 2e-13
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 22 KTPIQVLHEYGMKTKNIPV-YECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRA 80
K+ I + E +K +N+PV +E R H+ F +V+VG+ GEG SKK++K A
Sbjct: 183 KSEISQVFEIALK-RNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNA 241
Query: 81 AEAAINILK----------ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWR 130
A A + LK I + P S + +NPI L ++ +
Sbjct: 242 AIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEK 301
Query: 131 LPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFL 178
PEYTL E G +RE+ ++ + G G +KK AKRNAAE L
Sbjct: 302 EPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENML 349
Score = 55.8 bits (133), Expect = 4e-08
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 12 LGKMITAKPGK--TPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRV--TVGDITCT 67
LGK KP + +Q + Y M+ P R VP ++V +VG
Sbjct: 84 LGKKPMYKPVDPYSRMQSTYNYNMRGGAYP----PRYFYPFPVPPLLYQVELSVGGQQFN 139
Query: 68 GEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHH 127
G+G +++ AKH AA A+ IL+ +P+ L + + + LN Q I
Sbjct: 140 GKGKTRQAAKHDAAAKALRILQNEP-----LPERLEVNGRESEEENLNKSEISQVFEIAL 194
Query: 128 GWRLP-EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 186
LP + +++E GP H + + T + F+ G+G SKK +K+NAA L + + P
Sbjct: 195 KRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPP 254
Score = 42.7 bits (99), Expect = 4e-04
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 22/249 (8%)
Query: 55 FTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVP--DPLMPDPSKQPKN 112
F +V VG+ T G GT+KK+AK AAE + IL F VP P P + K
Sbjct: 319 FVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG------FKVPQAQPTKPALKSEEKT 372
Query: 113 QLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKG-----ASKK 167
+ G +++ E E G ++K + + L S + G
Sbjct: 373 PIKKPGDGRKVTFF------EPGSGDENGTSNKEDEFRMPYL-SHQQLPAGILPMVPEVA 425
Query: 168 QAKRNAAEKFLAKFSNISPE-NHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIP 226
QA + F+ +P ++T ++ L S K N+ + P
Sbjct: 426 QAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGP 485
Query: 227 NTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSD 286
T + L +++ QGF + Y D + + N ++ L S+ P + HG G +
Sbjct: 486 LTRPSEQLDYLSRVQGFQVEYKDFPKNNKN-EFVSLINCSSQPPLISHGIGKDVESCHDM 544
Query: 287 AAHNALQYL 295
AA N L+ L
Sbjct: 545 AALNILKLL 553
>gi|82659085 staufen isoform a [Homo sapiens]
Length = 496
Score = 73.9 bits (180), Expect = 2e-13
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 22 KTPIQVLHEYGMKTKNIPV-YECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRA 80
K+ I + E +K +N+PV +E R H+ F +V+VG+ GEG SKK++K A
Sbjct: 102 KSEISQVFEIALK-RNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNA 160
Query: 81 AEAAINILK----------ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWR 130
A A + LK I + P S + +NPI L ++ +
Sbjct: 161 AIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEK 220
Query: 131 LPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFL 178
PEYTL E G +RE+ ++ + G G +KK AKRNAAE L
Sbjct: 221 EPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENML 268
Score = 55.8 bits (133), Expect = 4e-08
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 12 LGKMITAKPGK--TPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRV--TVGDITCT 67
LGK KP + +Q + Y M+ P R VP ++V +VG
Sbjct: 3 LGKKPMYKPVDPYSRMQSTYNYNMRGGAYP----PRYFYPFPVPPLLYQVELSVGGQQFN 58
Query: 68 GEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHH 127
G+G +++ AKH AA A+ IL+ +P+ L + + + LN Q I
Sbjct: 59 GKGKTRQAAKHDAAAKALRILQNEP-----LPERLEVNGRESEEENLNKSEISQVFEIAL 113
Query: 128 GWRLP-EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 186
LP + +++E GP H + + T + F+ G+G SKK +K+NAA L + + P
Sbjct: 114 KRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPP 173
Score = 42.7 bits (99), Expect = 4e-04
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 22/249 (8%)
Query: 55 FTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVP--DPLMPDPSKQPKN 112
F +V VG+ T G GT+KK+AK AAE + IL F VP P P + K
Sbjct: 238 FVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG------FKVPQAQPTKPALKSEEKT 291
Query: 113 QLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKG-----ASKK 167
+ G +++ E E G ++K + + L S + G
Sbjct: 292 PIKKPGDGRKVTFF------EPGSGDENGTSNKEDEFRMPYL-SHQQLPAGILPMVPEVA 344
Query: 168 QAKRNAAEKFLAKFSNISPE-NHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIP 226
QA + F+ +P ++T ++ L S K N+ + P
Sbjct: 345 QAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGP 404
Query: 227 NTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSD 286
T + L +++ QGF + Y D + + N ++ L S+ P + HG G +
Sbjct: 405 LTRPSEQLDYLSRVQGFQVEYKDFPKNNKN-EFVSLINCSSQPPLISHGIGKDVESCHDM 463
Query: 287 AAHNALQYL 295
AA N L+ L
Sbjct: 464 AALNILKLL 472
>gi|82659083 staufen isoform a [Homo sapiens]
Length = 496
Score = 73.9 bits (180), Expect = 2e-13
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 22 KTPIQVLHEYGMKTKNIPV-YECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRA 80
K+ I + E +K +N+PV +E R H+ F +V+VG+ GEG SKK++K A
Sbjct: 102 KSEISQVFEIALK-RNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNA 160
Query: 81 AEAAINILK----------ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWR 130
A A + LK I + P S + +NPI L ++ +
Sbjct: 161 AIAVLEELKKLPPLPAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEK 220
Query: 131 LPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFL 178
PEYTL E G +RE+ ++ + G G +KK AKRNAAE L
Sbjct: 221 EPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENML 268
Score = 55.8 bits (133), Expect = 4e-08
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 12 LGKMITAKPGK--TPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRV--TVGDITCT 67
LGK KP + +Q + Y M+ P R VP ++V +VG
Sbjct: 3 LGKKPMYKPVDPYSRMQSTYNYNMRGGAYP----PRYFYPFPVPPLLYQVELSVGGQQFN 58
Query: 68 GEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHH 127
G+G +++ AKH AA A+ IL+ +P+ L + + + LN Q I
Sbjct: 59 GKGKTRQAAKHDAAAKALRILQNEP-----LPERLEVNGRESEEENLNKSEISQVFEIAL 113
Query: 128 GWRLP-EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISP 186
LP + +++E GP H + + T + F+ G+G SKK +K+NAA L + + P
Sbjct: 114 KRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPP 173
Score = 42.7 bits (99), Expect = 4e-04
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 22/249 (8%)
Query: 55 FTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVP--DPLMPDPSKQPKN 112
F +V VG+ T G GT+KK+AK AAE + IL F VP P P + K
Sbjct: 238 FVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG------FKVPQAQPTKPALKSEEKT 291
Query: 113 QLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKG-----ASKK 167
+ G +++ E E G ++K + + L S + G
Sbjct: 292 PIKKPGDGRKVTFF------EPGSGDENGTSNKEDEFRMPYL-SHQQLPAGILPMVPEVA 344
Query: 168 QAKRNAAEKFLAKFSNISPE-NHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIP 226
QA + F+ +P ++T ++ L S K N+ + P
Sbjct: 345 QAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGP 404
Query: 227 NTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSD 286
T + L +++ QGF + Y D + + N ++ L S+ P + HG G +
Sbjct: 405 LTRPSEQLDYLSRVQGFQVEYKDFPKNNKN-EFVSLINCSSQPPLISHGIGKDVESCHDM 463
Query: 287 AAHNALQYL 295
AA N L+ L
Sbjct: 464 AALNILKLL 472
>gi|82659091 staufen isoform c [Homo sapiens]
Length = 502
Score = 68.9 bits (167), Expect = 5e-12
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 36 KNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILK------ 89
++ P+ + R H+ F +V+VG+ GEG SKK++K AA A + LK
Sbjct: 122 ESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLP 181
Query: 90 ----ANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHK 145
I + P S + +NPI L ++ + PEYTL E G +
Sbjct: 182 AVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRR 241
Query: 146 REYTTICRLESFMETGKGASKKQAKRNAAEKFL 178
RE+ ++ + G G +KK AKRNAAE L
Sbjct: 242 REFVMQVKVGNHTAEGTGTNKKVAKRNAAENML 274
Score = 53.5 bits (127), Expect = 2e-07
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 12 LGKMITAKPGK--TPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRV--TVGDITCT 67
LGK KP + +Q + Y M+ P R VP ++V +VG
Sbjct: 3 LGKKPMYKPVDPYSRMQSTYNYNMRGGAYP----PRYFYPFPVPPLLYQVELSVGGQQFN 58
Query: 68 GEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNP--IGSLQELAI 125
G+G +++ AKH AA A+ IL+ +P+ L + + + LN I + E+A+
Sbjct: 59 GKGKTRQAAKHDAAAKALRILQNEP-----LPERLEVNGRESEEENLNKSEISQVFEIAL 113
Query: 126 HHGWRL-----PEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAK 180
+ P +++E GP H + + T + F+ G+G SKK +K+NAA L +
Sbjct: 114 KRNLPVNFESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEE 173
Query: 181 FSNISP 186
+ P
Sbjct: 174 LKKLPP 179
Score = 42.7 bits (99), Expect = 4e-04
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 22/249 (8%)
Query: 55 FTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVP--DPLMPDPSKQPKN 112
F +V VG+ T G GT+KK+AK AAE + IL F VP P P + K
Sbjct: 244 FVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG------FKVPQAQPTKPALKSEEKT 297
Query: 113 QLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKG-----ASKK 167
+ G +++ E E G ++K + + L S + G
Sbjct: 298 PIKKPGDGRKVTFF------EPGSGDENGTSNKEDEFRMPYL-SHQQLPAGILPMVPEVA 350
Query: 168 QAKRNAAEKFLAKFSNISPE-NHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIP 226
QA + F+ +P ++T ++ L S K N+ + P
Sbjct: 351 QAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGP 410
Query: 227 NTDYIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSD 286
T + L +++ QGF + Y D + + N ++ L S+ P + HG G +
Sbjct: 411 LTRPSEQLDYLSRVQGFQVEYKDFPKNNKN-EFVSLINCSSQPPLISHGIGKDVESCHDM 469
Query: 287 AAHNALQYL 295
AA N L+ L
Sbjct: 470 AALNILKLL 478
>gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo
sapiens]
Length = 1181
Score = 55.5 bits (132), Expect = 6e-08
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 3/160 (1%)
Query: 21 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTG-EGTSKKLAKHR 79
GK+P+ L E K N + + H P F + V VG T SKK+AK
Sbjct: 612 GKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671
Query: 80 AAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQE 139
AAE A+ L A+ A + + NP+G L E A HG+ E+ L +
Sbjct: 672 AAEEAMKALHGEATNSMASDNQVRKIGELVRYLNTNPVGGLLEYARSHGF-AAEFKLVDQ 730
Query: 140 GGPAHKREYTTICRLES-FMETGKGASKKQAKRNAAEKFL 178
GP H+ ++ ++ + SKKQ K+ AA+ L
Sbjct: 731 SGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 770
>gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo
sapiens]
Length = 931
Score = 52.4 bits (124), Expect = 5e-07
Identities = 59/216 (27%), Positives = 87/216 (40%), Gaps = 26/216 (12%)
Query: 21 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTG-EGTSKKLAKHR 79
GK+P+ L E K N + + H P F + V VG T SKK+AK
Sbjct: 317 GKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376
Query: 80 AAEAAINILKANASICFAV---PDPLMPD---------PSKQPKN-------QLNPIGSL 120
AAE A+ L A+ A P+ ++ + P+K K NP+G L
Sbjct: 377 AAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGL 436
Query: 121 QELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLES-FMETGKGASKKQAKRNAAEK--- 176
E A HG+ E+ L + GP H+ ++ ++ + SKKQ K+ AA+
Sbjct: 437 LEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALR 495
Query: 177 -FLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSP 211
+ + +T V G SL T L SP
Sbjct: 496 VLIGENEKAERMGFTEVTPVTGASLRRTMLLLSRSP 531
>gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo
sapiens]
Length = 1226
Score = 52.4 bits (124), Expect = 5e-07
Identities = 59/216 (27%), Positives = 87/216 (40%), Gaps = 26/216 (12%)
Query: 21 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTG-EGTSKKLAKHR 79
GK+P+ L E K N + + H P F + V VG T SKK+AK
Sbjct: 612 GKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671
Query: 80 AAEAAINILKANASICFAV---PDPLMPD---------PSKQPKN-------QLNPIGSL 120
AAE A+ L A+ A P+ ++ + P+K K NP+G L
Sbjct: 672 AAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGL 731
Query: 121 QELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLES-FMETGKGASKKQAKRNAAEK--- 176
E A HG+ E+ L + GP H+ ++ ++ + SKKQ K+ AA+
Sbjct: 732 LEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALR 790
Query: 177 -FLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSP 211
+ + +T V G SL T L SP
Sbjct: 791 VLIGENEKAERMGFTEVTPVTGASLRRTMLLLSRSP 826
>gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo
sapiens]
Length = 1200
Score = 50.8 bits (120), Expect = 1e-06
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 22/179 (12%)
Query: 21 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTG-EGTSKKLAKHR 79
GK+P+ L E K N + + H P F + V VG T SKK+AK
Sbjct: 612 GKSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671
Query: 80 AAEAAINILKANASICFAV---PDPLMPD---------PSKQPKN-------QLNPIGSL 120
AAE A+ L A+ A P+ ++ + P+K K NP+G L
Sbjct: 672 AAEEAMKALHGEATNSMASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGL 731
Query: 121 QELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLES-FMETGKGASKKQAKRNAAEKFL 178
E A HG+ E+ L + GP H+ ++ ++ + SKKQ K+ AA+ L
Sbjct: 732 LEYARSHGF-AAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789
>gi|38488720 DiGeorge syndrome critical region gene 8 [Homo sapiens]
Length = 773
Score = 42.4 bits (98), Expect = 5e-04
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 19/97 (19%)
Query: 21 GKTPIQVLHEYGMKTKNI-PVY---ECERSDVQIHVPTFTFRVTVGDITC-TGEGTSKKL 75
GK+ + +LHEY + + PVY ECE F VT+ +T +G +SKKL
Sbjct: 509 GKSEVCILHEYMQRVLKVRPVYNFFECENPS-----EPFGASVTIDGVTYGSGTASSKKL 563
Query: 76 AKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKN 112
AK++AA A + IL +PD + ++PK+
Sbjct: 564 AKNKAARATLEIL---------IPDFVKQTSEEKPKD 591
>gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo
sapiens]
Length = 674
Score = 37.7 bits (86), Expect = 0.013
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 99 PDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFM 158
P P++P + N++ P LQ YTL + GP H + + +
Sbjct: 74 PGPVLPKNALMQLNEIKP--GLQ------------YTLLSQTGPVHAPLFVMSVEVNGQV 119
Query: 159 ETGKGASKKQAKRNAAEKFLAKFSNI--SPENHISL 192
G G +KK+AK +AAEK L F + E H+++
Sbjct: 120 FEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAM 155
Score = 36.2 bits (82), Expect = 0.037
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 21 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRA 80
GK P+ +L+E K Y+ + H +F V V G G +KKLAK RA
Sbjct: 233 GKNPVMILNELRPGLK----YDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARA 288
Query: 81 AEAAI 85
A++A+
Sbjct: 289 AQSAL 293
Score = 33.1 bits (74), Expect = 0.31
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 101 PLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMET 160
PL P P + NP+ L EL G + Y E G +H + + ++
Sbjct: 221 PLPVLPPFPPPSGKNPVMILNEL--RPGLK---YDFLSESGESHAKSFVMSVVVDGQFFE 275
Query: 161 GKGASKKQAKRNAAEKFLAKFSNI 184
G G +KK AK AA+ LA N+
Sbjct: 276 GSGRNKKLAKARAAQSALAAIFNL 299
Score = 30.0 bits (66), Expect = 2.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 50 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAI 85
+H P F V V G G +KK AK AAE A+
Sbjct: 104 VHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKAL 139
>gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo
sapiens]
Length = 714
Score = 37.7 bits (86), Expect = 0.013
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 99 PDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFM 158
P P++P + N++ P LQ YTL + GP H + + +
Sbjct: 74 PGPVLPKNALMQLNEIKP--GLQ------------YTLLSQTGPVHAPLFVMSVEVNGQV 119
Query: 159 ETGKGASKKQAKRNAAEKFLAKFSNI--SPENHISL 192
G G +KK+AK +AAEK L F + E H+++
Sbjct: 120 FEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAM 155
Score = 36.2 bits (82), Expect = 0.037
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 21 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRA 80
GK P+ +L+E K Y+ + H +F V V G G +KKLAK RA
Sbjct: 233 GKNPVMILNELRPGLK----YDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARA 288
Query: 81 AEAAI 85
A++A+
Sbjct: 289 AQSAL 293
Score = 33.1 bits (74), Expect = 0.31
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 101 PLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMET 160
PL P P + NP+ L EL G + Y E G +H + + ++
Sbjct: 221 PLPVLPPFPPPSGKNPVMILNEL--RPGLK---YDFLSESGESHAKSFVMSVVVDGQFFE 275
Query: 161 GKGASKKQAKRNAAEKFLAKFSNI 184
G G +KK AK AA+ LA N+
Sbjct: 276 GSGRNKKLAKARAAQSALAAIFNL 299
Score = 30.0 bits (66), Expect = 2.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 50 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAI 85
+H P F V V G G +KK AK AAE A+
Sbjct: 104 VHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKAL 139
>gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo
sapiens]
Length = 741
Score = 37.7 bits (86), Expect = 0.013
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 99 PDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFM 158
P P++P + N++ P LQ YTL + GP H + + +
Sbjct: 74 PGPVLPKNALMQLNEIKP--GLQ------------YTLLSQTGPVHAPLFVMSVEVNGQV 119
Query: 159 ETGKGASKKQAKRNAAEKFLAKFSNI--SPENHISL 192
G G +KK+AK +AAEK L F + E H+++
Sbjct: 120 FEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAM 155
Score = 36.2 bits (82), Expect = 0.037
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 21 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRA 80
GK P+ +L+E K Y+ + H +F V V G G +KKLAK RA
Sbjct: 233 GKNPVMILNELRPGLK----YDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARA 288
Query: 81 AEAAI 85
A++A+
Sbjct: 289 AQSAL 293
Score = 33.1 bits (74), Expect = 0.31
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 101 PLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMET 160
PL P P + NP+ L EL G + Y E G +H + + ++
Sbjct: 221 PLPVLPPFPPPSGKNPVMILNEL--RPGLK---YDFLSESGESHAKSFVMSVVVDGQFFE 275
Query: 161 GKGASKKQAKRNAAEKFLAKFSNI 184
G G +KK AK AA+ LA N+
Sbjct: 276 GSGRNKKLAKARAAQSALAAIFNL 299
Score = 30.0 bits (66), Expect = 2.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 50 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAI 85
+H P F V V G G +KK AK AAE A+
Sbjct: 104 VHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKAL 139
>gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo
sapiens]
Length = 701
Score = 37.7 bits (86), Expect = 0.013
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 99 PDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFM 158
P P++P + N++ P LQ YTL + GP H + + +
Sbjct: 74 PGPVLPKNALMQLNEIKP--GLQ------------YTLLSQTGPVHAPLFVMSVEVNGQV 119
Query: 159 ETGKGASKKQAKRNAAEKFLAKFSNI--SPENHISL 192
G G +KK+AK +AAEK L F + E H+++
Sbjct: 120 FEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAM 155
Score = 36.2 bits (82), Expect = 0.037
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 21 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRA 80
GK P+ +L+E K Y+ + H +F V V G G +KKLAK RA
Sbjct: 233 GKNPVMILNELRPGLK----YDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARA 288
Query: 81 AEAAI 85
A++A+
Sbjct: 289 AQSAL 293
Score = 33.1 bits (74), Expect = 0.31
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 101 PLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMET 160
PL P P + NP+ L EL G + Y E G +H + + ++
Sbjct: 221 PLPVLPPFPPPSGKNPVMILNEL--RPGLK---YDFLSESGESHAKSFVMSVVVDGQFFE 275
Query: 161 GKGASKKQAKRNAAEKFLAKFSNI 184
G G +KK AK AA+ LA N+
Sbjct: 276 GSGRNKKLAKARAAQSALAAIFNL 299
Score = 30.0 bits (66), Expect = 2.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 50 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAI 85
+H P F V V G G +KK AK AAE A+
Sbjct: 104 VHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKAL 139
>gi|208431829 eukaryotic translation initiation factor 2-alpha
kinase 2 isoform b [Homo sapiens]
Length = 510
Score = 37.4 bits (85), Expect = 0.016
Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 14/191 (7%)
Query: 25 IQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTV-GDITCTGEGTSKKLAKHRAAEA 83
++ L+ Y K + Y+ + H FTF+V + G GEG SKK AK+ AA+
Sbjct: 11 MEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKL 70
Query: 84 AINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQE---G 140
A+ IL N P L S + + N IG + +A + T++ E
Sbjct: 71 AVEIL--NKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIA-----QKKRLTVNYEQCAS 123
Query: 141 GPAHKREYTTICRL-ESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTNVVGHS 199
G + C++ + G G++K++AK+ AA+ LA +S E + + S
Sbjct: 124 GVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAK--LAYLQILSEETSVKSDYLSSGS 181
Query: 200 LGCTWHSLRNS 210
T S NS
Sbjct: 182 FATTCESQSNS 192
>gi|208431827 eukaryotic translation initiation factor 2-alpha
kinase 2 isoform a [Homo sapiens]
Length = 551
Score = 37.4 bits (85), Expect = 0.016
Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 14/191 (7%)
Query: 25 IQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTV-GDITCTGEGTSKKLAKHRAAEA 83
++ L+ Y K + Y+ + H FTF+V + G GEG SKK AK+ AA+
Sbjct: 11 MEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKL 70
Query: 84 AINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQE---G 140
A+ IL N P L S + + N IG + +A + T++ E
Sbjct: 71 AVEIL--NKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIA-----QKKRLTVNYEQCAS 123
Query: 141 GPAHKREYTTICRL-ESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTNVVGHS 199
G + C++ + G G++K++AK+ AA+ LA +S E + + S
Sbjct: 124 GVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAK--LAYLQILSEETSVKSDYLSSGS 181
Query: 200 LGCTWHSLRNS 210
T S NS
Sbjct: 182 FATTCESQSNS 192
>gi|4506103 eukaryotic translation initiation factor 2-alpha kinase
2 isoform a [Homo sapiens]
Length = 551
Score = 37.4 bits (85), Expect = 0.016
Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 14/191 (7%)
Query: 25 IQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTV-GDITCTGEGTSKKLAKHRAAEA 83
++ L+ Y K + Y+ + H FTF+V + G GEG SKK AK+ AA+
Sbjct: 11 MEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKL 70
Query: 84 AINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQE---G 140
A+ IL N P L S + + N IG + +A + T++ E
Sbjct: 71 AVEIL--NKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIA-----QKKRLTVNYEQCAS 123
Query: 141 GPAHKREYTTICRL-ESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTNVVGHS 199
G + C++ + G G++K++AK+ AA+ LA +S E + + S
Sbjct: 124 GVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAK--LAYLQILSEETSVKSDYLSSGS 181
Query: 200 LGCTWHSLRNS 210
T S NS
Sbjct: 182 FATTCESQSNS 192
>gi|8922077 adenosine deaminase, RNA-specific, B2 [Homo sapiens]
Length = 739
Score = 36.2 bits (82), Expect = 0.037
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 50 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFA 97
+H P F V V +T G G +KK AK RAAE A+ + C A
Sbjct: 151 VHAPVFAVAVEVNGLTFEGTGPTKKKAKMRAAELALRSFVQFPNACQA 198
Score = 32.7 bits (73), Expect = 0.40
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 41 YECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINIL 88
Y C + +F V+V T G G SKKLA+ +AA+AA+ L
Sbjct: 292 YVCLAEPAERRARSFVMAVSVDGRTFEGSGRSKKLARGQAAQAALQEL 339
Score = 30.0 bits (66), Expect = 2.6
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 133 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF 181
+Y + GP H + + G G +KK+AK AAE L F
Sbjct: 141 QYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGPTKKKAKMRAAELALRSF 189
>gi|24234756 interleukin enhancer binding factor 3 isoform c [Homo
sapiens]
Length = 690
Score = 35.4 bits (80), Expect = 0.062
Identities = 41/173 (23%), Positives = 61/173 (35%), Gaps = 33/173 (19%)
Query: 50 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAIN----------------------- 86
+H P FT V V + G SKK AK A +
Sbjct: 427 VHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
Query: 87 ----ILKANASICFAVPDPLMPDPSKQPKNQ---LNPIGSLQELAIHHGWRLPEYTLSQE 139
+ A A + AV P PS Q L G + ++ R +Y L E
Sbjct: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLKYELISE 546
Query: 140 GGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL 192
G +H + + ++ G G++KK AK AA LA + P+ ++L
Sbjct: 547 TGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAA---LAALEKLFPDTPLAL 596
Score = 32.7 bits (73), Expect = 0.40
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 26/148 (17%)
Query: 3 STPFCGFCS-----LGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTF 57
STP F S G ++T K GK P+ L+E K YE H F
Sbjct: 503 STPSAAFPSDATAEQGPILT-KHGKNPVMELNEKRRGLK----YELISETGGSHDKRFVM 557
Query: 58 RVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-PLMPDPSKQPKNQLNP 116
V V G G++KK+AK AA AA+ L PD PL D +K+ + +
Sbjct: 558 EVEVDGQKFQGAGSNKKVAKAYAALAALEKL---------FPDTPLALDANKKKRAPVPV 608
Query: 117 IGSLQELAIHHGWRLPEYTLSQEGGPAH 144
G + A H P + + GGP H
Sbjct: 609 RGGPKFAAKPHN---PGFGM---GGPMH 630
>gi|24234753 interleukin enhancer binding factor 3 isoform b [Homo
sapiens]
Length = 702
Score = 35.4 bits (80), Expect = 0.062
Identities = 41/173 (23%), Positives = 61/173 (35%), Gaps = 33/173 (19%)
Query: 50 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAIN----------------------- 86
+H P FT V V + G SKK AK A +
Sbjct: 427 VHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
Query: 87 ----ILKANASICFAVPDPLMPDPSKQPKNQ---LNPIGSLQELAIHHGWRLPEYTLSQE 139
+ A A + AV P PS Q L G + ++ R +Y L E
Sbjct: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLKYELISE 546
Query: 140 GGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL 192
G +H + + ++ G G++KK AK AA LA + P+ ++L
Sbjct: 547 TGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAA---LAALEKLFPDTPLAL 596
Score = 32.7 bits (73), Expect = 0.40
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 26/148 (17%)
Query: 3 STPFCGFCS-----LGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTF 57
STP F S G ++T K GK P+ L+E K YE H F
Sbjct: 503 STPSAAFPSDATAEQGPILT-KHGKNPVMELNEKRRGLK----YELISETGGSHDKRFVM 557
Query: 58 RVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-PLMPDPSKQPKNQLNP 116
V V G G++KK+AK AA AA+ L PD PL D +K+ + +
Sbjct: 558 EVEVDGQKFQGAGSNKKVAKAYAALAALEKL---------FPDTPLALDANKKKRAPVPV 608
Query: 117 IGSLQELAIHHGWRLPEYTLSQEGGPAH 144
G + A H P + + GGP H
Sbjct: 609 RGGPKFAAKPHN---PGFGM---GGPMH 630
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 35.4 bits (80), Expect = 0.062
Identities = 41/173 (23%), Positives = 61/173 (35%), Gaps = 33/173 (19%)
Query: 50 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAIN----------------------- 86
+H P FT V V + G SKK AK A +
Sbjct: 427 VHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
Query: 87 ----ILKANASICFAVPDPLMPDPSKQPKNQ---LNPIGSLQELAIHHGWRLPEYTLSQE 139
+ A A + AV P PS Q L G + ++ R +Y L E
Sbjct: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLKYELISE 546
Query: 140 GGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL 192
G +H + + ++ G G++KK AK AA LA + P+ ++L
Sbjct: 547 TGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAA---LAALEKLFPDTPLAL 596
Score = 32.7 bits (73), Expect = 0.40
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 26/148 (17%)
Query: 3 STPFCGFCS-----LGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTF 57
STP F S G ++T K GK P+ L+E K YE H F
Sbjct: 503 STPSAAFPSDATAEQGPILT-KHGKNPVMELNEKRRGLK----YELISETGGSHDKRFVM 557
Query: 58 RVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-PLMPDPSKQPKNQLNP 116
V V G G++KK+AK AA AA+ L PD PL D +K+ + +
Sbjct: 558 EVEVDGQKFQGAGSNKKVAKAYAALAALEKL---------FPDTPLALDANKKKRAPVPV 608
Query: 117 IGSLQELAIHHGWRLPEYTLSQEGGPAH 144
G + A H P + + GGP H
Sbjct: 609 RGGPKFAAKPHN---PGFGM---GGPMH 630
>gi|212549555 interleukin enhancer binding factor 3 isoform e [Homo
sapiens]
Length = 706
Score = 34.3 bits (77), Expect = 0.14
Identities = 42/177 (23%), Positives = 62/177 (35%), Gaps = 37/177 (20%)
Query: 50 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAIN----------------------- 86
+H P FT V V + G SKK AK A +
Sbjct: 427 VHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
Query: 87 ----ILKANASICFAVPDPLMPDPS-------KQPKNQLNPIGSLQELAIHHGWRLPEYT 135
+ A A + AV P PS KQ L G + ++ R +Y
Sbjct: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRRGLKYE 546
Query: 136 LSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL 192
L E G +H + + ++ G G++KK AK AA LA + P+ ++L
Sbjct: 547 LISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAA---LAALEKLFPDTPLAL 600
Score = 32.3 bits (72), Expect = 0.53
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 16 ITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKL 75
I K GK P+ L+E K YE H F V V G G++KK+
Sbjct: 524 ILTKHGKNPVMELNEKRRGLK----YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKV 579
Query: 76 AKHRAAEAAINILKANASICFAVPD-PLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEY 134
AK AA AA+ L PD PL D +K+ + + G + A H P +
Sbjct: 580 AKAYAALAALEKL---------FPDTPLALDANKKKRAPVPVRGGPKFAAKPHN---PGF 627
Query: 135 TLSQEGGPAH 144
+ GGP H
Sbjct: 628 GM---GGPMH 634
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 34.3 bits (77), Expect = 0.14
Identities = 42/177 (23%), Positives = 62/177 (35%), Gaps = 37/177 (20%)
Query: 50 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAIN----------------------- 86
+H P FT V V + G SKK AK A +
Sbjct: 427 VHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
Query: 87 ----ILKANASICFAVPDPLMPDPS-------KQPKNQLNPIGSLQELAIHHGWRLPEYT 135
+ A A + AV P PS KQ L G + ++ R +Y
Sbjct: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRRGLKYE 546
Query: 136 LSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL 192
L E G +H + + ++ G G++KK AK AA LA + P+ ++L
Sbjct: 547 LISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAA---LAALEKLFPDTPLAL 600
Score = 32.3 bits (72), Expect = 0.53
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 16 ITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKL 75
I K GK P+ L+E K YE H F V V G G++KK+
Sbjct: 524 ILTKHGKNPVMELNEKRRGLK----YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKV 579
Query: 76 AKHRAAEAAINILKANASICFAVPD-PLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEY 134
AK AA AA+ L PD PL D +K+ + + G + A H P +
Sbjct: 580 AKAYAALAALEKL---------FPDTPLALDANKKKRAPVPVRGGPKFAAKPHN---PGF 627
Query: 135 TLSQEGGPAH 144
+ GGP H
Sbjct: 628 GM---GGPMH 634
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,913,499
Number of Sequences: 37866
Number of extensions: 520089
Number of successful extensions: 1425
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1311
Number of HSP's gapped (non-prelim): 96
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.