Guide to the Human Genome
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Name: SPOP Sequence: fasta or formatted (374aa) NCBI GI: 56117834
Description:

speckle-type POZ protein

Referenced in:

Cullins and SCF Complexes
Additional Interaction Domain Families

Other entries for this name:
alt mRNA [374aa] speckle-type POZ protein
alt mRNA [374aa] speckle-type POZ protein
alt mRNA [374aa] speckle-type POZ protein
alt mRNA [374aa] speckle-type POZ protein
alt mRNA [374aa] speckle-type POZ protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         32           3
 C cysteine            3.5         13           2
 D aspartate           5.6         21           2
 E glutamate           8.3         31           2
 F phenylalanine       5.1         19           1
 G glycine             4.0         15           2
 H histidine           1.6          6           1
 I isoleucine          3.2         12           1
 K lysine              7.8         29           2
 L leucine             9.6         36           3
 M methionine          3.7         14           2
 N asparagine          4.3         16           2
 P proline             4.5         17           4
 Q glutamine           2.9         11           1
 R arginine            4.3         16           2
 S serine              9.1         34           2
 T threonine           2.7         10           1
 V valine              7.2         27           2
 W tryptophan          1.6          6           1
 Y tyrosine            2.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   speckle-type POZ protein 
SPOP                  1.000   speckle-type POZ protein 
SPOP                  1.000   speckle-type POZ protein 
SPOP                  1.000   speckle-type POZ protein 
SPOP                  1.000   speckle-type POZ protein 
SPOP                  1.000   speckle-type POZ protein 
SPOPL                 0.849   speckle-type POZ protein-like 
KLHL7                 0.087   kelch-like 7 isoform 1 
KLHL7                 0.086   kelch-like 7 isoform 2 
KLHL6                 0.080   kelch-like 6 
KBTBD2                0.075   kelch repeat and BTB (POZ) domain containing 2 [Hom...
KLHL17                0.075   kelch-like 17 
BTBD9                 0.072   BTB (POZ) domain containing 9 isoform a 
BTBD9                 0.072   BTB (POZ) domain containing 9 isoform a 
KLHL21                0.071   kelch-like 21 
KLHL3                 0.070   kelch-like 3 
KLHL2                 0.067   kelch-like 2, Mayven isoform 2 
KLHL2                 0.067   kelch-like 2, Mayven isoform 1 
KLHL25                0.067   BTB/POZ KELCH domain protein 
KBTBD4                0.065   kelch repeat and BTB (POZ) domain containing 4 isof...
KBTBD4                0.065   kelch repeat and BTB (POZ) domain containing 4 isof...
KLHL11                0.064   kelch-like 11 
KLHL24                0.064   DRE1 protein 
IBTK                  0.063   inhibitor of Bruton's tyrosine kinase 
KLHL32                0.061   kelch-like 32 
ENC1                  0.060   ectodermal-neural cortex (with BTB-like domain) [Homo...
KBTBD5                0.060   kelch repeat and BTB (POZ) domain containing 5 [Homo...
KEAP1                 0.059   kelch-like ECH-associated protein 1 
KEAP1                 0.059   kelch-like ECH-associated protein 1 
KLHL23                0.059   kelch-like 23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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