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Search of human proteins with 211059437
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|211059437 hypothetical protein LOC284428 [Homo sapiens]
(208 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|211059437 hypothetical protein LOC284428 [Homo sapiens] 419 e-118
gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like ... 415 e-116
gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like ... 412 e-116
gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo sa... 412 e-115
gi|113428063 PREDICTED: similar to methyl-CpG binding domain pro... 404 e-113
gi|169217724 PREDICTED: similar to methyl-CpG binding domain pro... 381 e-106
gi|226502212 methyl-CpG binding domain protein 3-like [Homo sapi... 112 3e-25
gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens] 80 2e-15
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 79 4e-15
gi|5902064 rabphilin 3A-like (without C2 domains) [Homo sapiens] 35 0.035
gi|148747864 JAW1-related protein isoform a [Homo sapiens] 33 0.22
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens] 32 0.38
gi|150170699 kinesin family member 26A [Homo sapiens] 32 0.38
gi|225543215 antigen identified by monoclonal antibody Ki-67 iso... 32 0.50
gi|103472005 antigen identified by monoclonal antibody Ki-67 iso... 32 0.50
gi|193788732 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788730 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788728 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788724 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788720 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|120433602 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788548 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788544 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788542 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788540 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788538 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788536 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193794832 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788534 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788532 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
>gi|211059437 hypothetical protein LOC284428 [Homo sapiens]
Length = 208
Score = 419 bits (1078), Expect = e-118
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
Query: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
Query: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
Query: 181 RVKKARERLAKALQADRLARQAEMLTGG 208
RVKKARERLAKALQADRLARQAEMLTGG
Sbjct: 181 RVKKARERLAKALQADRLARQAEMLTGG 208
>gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like
4-like [Homo sapiens]
Length = 208
Score = 415 bits (1066), Expect = e-116
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
Query: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
Query: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
Query: 181 RVKKARERLAKALQADRLARQAEMLT 206
RVKKARERLAKALQADRLARQAEMLT
Sbjct: 181 RVKKARERLAKALQADRLARQAEMLT 206
>gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like
3-like [Homo sapiens]
Length = 208
Score = 412 bits (1060), Expect = e-116
Identities = 205/206 (99%), Positives = 205/206 (99%)
Query: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
Query: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
Query: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
GTAGESLDRAGAERVR PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
Query: 181 RVKKARERLAKALQADRLARQAEMLT 206
RVKKARERLAKALQADRLARQAEMLT
Sbjct: 181 RVKKARERLAKALQADRLARQAEMLT 206
>gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo
sapiens]
Length = 208
Score = 412 bits (1058), Expect = e-115
Identities = 205/208 (98%), Positives = 206/208 (99%)
Query: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
MGEPAFTSFPS PVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1 MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
Query: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
Query: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
GTAGESLDRAGAERVR PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
Query: 181 RVKKARERLAKALQADRLARQAEMLTGG 208
RVKKARERLAKALQADRLAR+AEMLTGG
Sbjct: 181 RVKKARERLAKALQADRLARRAEMLTGG 208
>gi|113428063 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2 [Homo sapiens]
Length = 204
Score = 404 bits (1037), Expect = e-113
Identities = 201/204 (98%), Positives = 202/204 (99%)
Query: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
MGEPAFTSFPS PVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1 MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
Query: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
Query: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
GTAGESLDRAGAERVR PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
Query: 181 RVKKARERLAKALQADRLARQAEM 204
RVKKARERLAKALQADRLAR+AEM
Sbjct: 181 RVKKARERLAKALQADRLARRAEM 204
>gi|169217724 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2, partial [Homo sapiens]
Length = 193
Score = 381 bits (978), Expect = e-106
Identities = 189/193 (97%), Positives = 191/193 (98%)
Query: 16 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR
Sbjct: 1 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60
Query: 76 KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
KGDEHLEKPQQLCAYR+LQALQPCSSQGEGSSPLHLESVLSILAPGTA ESLDRAGAERV
Sbjct: 61 KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120
Query: 136 RIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 195
R PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA
Sbjct: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 180
Query: 196 DRLARQAEMLTGG 208
DRLAR+AEMLTGG
Sbjct: 181 DRLARRAEMLTGG 193
>gi|226502212 methyl-CpG binding domain protein 3-like [Homo
sapiens]
Length = 194
Score = 112 bits (279), Expect = 3e-25
Identities = 77/179 (43%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 28 QKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQL 87
Q+K+ + + + +++P+R++S F+RPVTRI HP N+VR + +E LEKPQQ+
Sbjct: 6 QRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQV 65
Query: 88 CAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESL--DRAGAERVRIPLEPTPGR 145
C RRLQ LQ SS GE SS L L + L L P G SL D A P+
Sbjct: 66 CWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACS 125
Query: 146 FPAVAGGPTPGMGCQLPPPLSGQ-LVTPADIRRQARRVKKARERLAKALQADRLARQAE 203
AV P G+G + L Q LVT DIR+Q +VK RERLA AL AD LA +AE
Sbjct: 126 SDAVEIIPAEGVG--ISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANEAE 182
>gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]
Length = 291
Score = 79.7 bits (195), Expect = 2e-15
Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 3/194 (1%)
Query: 16 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
GK+ + M + Q+ R + + +ALP+R T+ IF++PVT+I +HP N+V +
Sbjct: 67 GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKV-KS 125
Query: 76 KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
+ +++P+QL ++L L E + L L + PG E+L A A +
Sbjct: 126 DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL 185
Query: 136 RIPLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQ 194
P G+ A A PG+ PL +VT DIR+Q V++ R+RL +AL
Sbjct: 186 HTSTMPITGQLSA-AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALM 244
Query: 195 ADRLARQAEMLTGG 208
AD LA E+ G
Sbjct: 245 ADMLAHVEELARDG 258
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 78.6 bits (192), Expect = 4e-15
Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 7/187 (3%)
Query: 22 MMPWALQK-KREIHMAKAHRRRAA---RSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKG 77
MMP LQK K+ + ++ + + LP+R T+ IF++PVT++ +HP N+V +
Sbjct: 213 MMPSKLQKNKQRLRNDPLNQNKGKPDLNTTLPIRQTASIFKQPVTKVTNHPSNKV-KSDP 271
Query: 78 DEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRI 137
E+P+QL +RLQ L + + L L + PG+ E+L A A +
Sbjct: 272 QRMNEQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHT 331
Query: 138 PLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQAD 196
P G+ A A P + PL +VT DIR+Q RV++ R++L +AL AD
Sbjct: 332 SSAPITGQVSA-AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEALMAD 390
Query: 197 RLARQAE 203
L+R A+
Sbjct: 391 ILSRAAD 397
>gi|5902064 rabphilin 3A-like (without C2 domains) [Homo sapiens]
Length = 315
Score = 35.4 bits (80), Expect = 0.035
Identities = 31/97 (31%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Query: 68 PDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGE-S 126
P VR RKGD+ ++ R+ P P HL S LA G G S
Sbjct: 226 PSTGVRDRKGDKPWKESGGSVEAPRMGFTHP---------PGHLSGCQSSLASGETGTGS 276
Query: 127 LDRAGAERV----RIPLEPTPGRFPAVAGGPTPGMGC 159
D G R R P++ TPGR PA P C
Sbjct: 277 ADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGPSSC 313
>gi|148747864 JAW1-related protein isoform a [Homo sapiens]
Length = 903
Score = 32.7 bits (73), Expect = 0.22
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 120 PGTAGESLDRAGAERV----RIPLEPTPGRFPAVAGGPTPGMGCQLPPP--LSGQLVTP- 172
PGT G S A + P EP + PA G PT G+ C P L+G +P
Sbjct: 32 PGTRGHSQQEAAMPHIPEDEEPPGEPQAAQSPAGQGPPTAGVSCSPTPTIVLTGDATSPE 91
Query: 173 -ADIRRQARRVKKARERLA 190
+ A RV +RL+
Sbjct: 92 GETDKNLANRVHSPHKRLS 110
>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
Length = 271
Score = 32.0 bits (71), Expect = 0.38
Identities = 43/142 (30%), Positives = 57/142 (40%), Gaps = 25/142 (17%)
Query: 63 RIRSHPDNQVR-RRKGDEHLEKP-QQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
R+ + P +R +R GD L +L YR QP SS +S S S AP
Sbjct: 9 RVNAVPGTMLRPQRPGDLQLGASLYELVGYR-----QPPSSSSSSTSSTSSTSSSSTTAP 63
Query: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
L +A E+ P EP GP PG G P S + + ++Q R
Sbjct: 64 -----LLPKAAREKPEAPAEPP---------GPGPGSGAH--PGGSARPDAKEEQQQQLR 107
Query: 181 RVKKARERLAKALQADRLARQA 202
R +RER K +Q LA A
Sbjct: 108 RKINSRER--KRMQDLNLAMDA 127
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 32.0 bits (71), Expect = 0.38
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 103 GEGSSPLHLESVLSILAPGTAGESLDR-----AGAERVRIPLEPTP-----GRFPAVAGG 152
G SS S +PG SL G +R R+ P P GR P++
Sbjct: 1671 GSASSAPDSMSESGAASPGARTRSLKSPKKRATGLQRRRLIPAPLPDTTALGRKPSL--- 1727
Query: 153 PTPGMGCQLPPPLSGQLVTPADIR 176
PG LPPPL+G L P +I+
Sbjct: 1728 --PGQWVDLPPPLAGSLKEPFEIK 1749
>gi|225543215 antigen identified by monoclonal antibody Ki-67 isoform
2 [Homo sapiens]
Length = 2896
Score = 31.6 bits (70), Expect = 0.50
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 142 TPGRFP-AVAGGPTPGMGCQLPPPLSGQLVTPADIRRQ------ARRVKKARERLAKALQ 194
TPG AVA G T M C+ PP S TP RRQ R V+K L K Q
Sbjct: 995 TPGHTEEAVAAGKTTKMPCESSPPESAD--TPTSTRRQPKTPLEKRDVQKELSALKKLTQ 1052
Query: 195 ADRLARQAEMLTGG 208
+ + GG
Sbjct: 1053 TSGETTHTDKVPGG 1066
>gi|103472005 antigen identified by monoclonal antibody Ki-67 isoform
1 [Homo sapiens]
Length = 3256
Score = 31.6 bits (70), Expect = 0.50
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 142 TPGRFP-AVAGGPTPGMGCQLPPPLSGQLVTPADIRRQ------ARRVKKARERLAKALQ 194
TPG AVA G T M C+ PP S TP RRQ R V+K L K Q
Sbjct: 1355 TPGHTEEAVAAGKTTKMPCESSPPESAD--TPTSTRRQPKTPLEKRDVQKELSALKKLTQ 1412
Query: 195 ADRLARQAEMLTGG 208
+ + GG
Sbjct: 1413 TSGETTHTDKVPGG 1426
>gi|193788732 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 5 [Homo sapiens]
Length = 2166
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1709 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1764
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1765 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1823
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1824 PPLSPAIRVQEV 1835
>gi|193788730 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 4 [Homo sapiens]
Length = 2173
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1795
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1796 PPLSPAIRVQEV 1807
>gi|193788728 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 3 [Homo sapiens]
Length = 2179
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1722 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1777
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1778 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1836
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1837 PPLSPAIRVQEV 1848
>gi|193788724 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 2 [Homo sapiens]
Length = 2186
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1729 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1784
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1785 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1843
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1844 PPLSPAIRVQEV 1855
>gi|193788720 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 1 [Homo sapiens]
Length = 2221
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1729 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1784
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1785 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1843
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1844 PPLSPAIRVQEV 1855
>gi|120433602 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 18 [Homo sapiens]
Length = 2138
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1795
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1796 PPLSPAIRVQEV 1807
>gi|193788548 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 20 [Homo sapiens]
Length = 2127
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1670 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1725
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1726 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1784
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1785 PPLSPAIRVQEV 1796
>gi|193788544 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 19 [Homo sapiens]
Length = 2135
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1678 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1733
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1734 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1792
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1793 PPLSPAIRVQEV 1804
>gi|193788542 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 17 [Homo sapiens]
Length = 2138
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1795
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1796 PPLSPAIRVQEV 1807
>gi|193788540 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 16 [Homo sapiens]
Length = 2138
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1795
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1796 PPLSPAIRVQEV 1807
>gi|193788538 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 15 [Homo sapiens]
Length = 2138
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1795
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1796 PPLSPAIRVQEV 1807
>gi|193788536 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 14 [Homo sapiens]
Length = 2138
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1795
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1796 PPLSPAIRVQEV 1807
>gi|193794832 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoforom 13 [Homo sapiens]
Length = 2144
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1687 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1742
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1743 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1801
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1802 PPLSPAIRVQEV 1813
>gi|193788534 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 12 [Homo sapiens]
Length = 2146
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1689 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1744
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1745 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1803
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1804 PPLSPAIRVQEV 1815
>gi|193788532 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 11 [Homo sapiens]
Length = 2146
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1689 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1744
Query: 102 QGEGSSPLHLESVLSILAP---GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMG 158
QG+ SP H + V S P + G + + A + P P +P+ G G
Sbjct: 1745 QGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTV-STVEGHG 1803
Query: 159 CQLPPPLSGQLV 170
L P + Q V
Sbjct: 1804 PPLSPAIRVQEV 1815
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,509,283
Number of Sequences: 37866
Number of extensions: 511022
Number of successful extensions: 2347
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 2256
Number of HSP's gapped (non-prelim): 198
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.