Guide to the Human Genome
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Name: TCN2 Sequence: fasta or formatted (427aa) NCBI GI: 21071010
Description:

transcobalamin II precursor

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         33           2
 C cysteine            1.9          8           1
 D aspartate           4.4         19           2
 E glutamate           5.9         25           2
 F phenylalanine       3.3         14           1
 G glycine             7.7         33           2
 H histidine           4.2         18           2
 I isoleucine          3.7         16           2
 K lysine              4.2         18           2
 L leucine            16.2         69           2
 M methionine          2.8         12           1
 N asparagine          1.9          8           1
 P proline             4.9         21           2
 Q glutamine           5.4         23           2
 R arginine            5.2         22           2
 S serine              6.3         27           2
 T threonine           4.9         21           1
 V valine              5.2         22           2
 W tryptophan          0.9          4           1
 Y tyrosine            3.3         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcobalamin II precursor 
TCN1                  0.126   transcobalamin I precursor 
GIF                   0.092   gastric intrinsic factor (vitamin B synthesis) precu...
UNC13A                0.008   unc-13 homolog A 
PCDHB9                0.006   protocadherin beta 9 precursor 
SOS1                  0.005   son of sevenless homolog 1 
MYH14                 0.005   myosin, heavy chain 14 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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