Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 21040261
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21040261 START domain containing protein 6 [Homo sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21040261 START domain containing protein 6 [Homo sapiens] 452 e-127
gi|32526915 StAR-related lipid transfer protein 5 [Homo sapiens] 142 2e-34
gi|21040247 StAR-related lipid transfer (START) domain containin... 112 3e-25
gi|31543657 StAR-related lipid transfer (START) domain containin... 78 5e-15
gi|56243551 steroidogenic acute regulatory protein isoform 1 [Ho... 78 7e-15
gi|56117848 steroidogenic acute regulatory protein isoform 2 [Ho... 56 3e-08
gi|151301035 START domain containing 7 [Homo sapiens] 42 4e-04
gi|22165400 thioesterase, adipose associated isoform BFIT2 [Homo... 40 0.001
gi|22165355 thioesterase, adipose associated isoform BFIT1 [Homo... 40 0.001
gi|18640736 acyl-CoA thioesterase 12 [Homo sapiens] 38 0.008
gi|116812600 START domain containing 10 [Homo sapiens] 33 0.25
gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo ... 28 8.0
gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens] 28 8.0
gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens] 28 8.0
gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens] 28 8.0
gi|30089954 H326 [Homo sapiens] 28 8.0
>gi|21040261 START domain containing protein 6 [Homo sapiens]
Length = 220
Score = 452 bits (1162), Expect = e-127
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPESPAK 60
MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPESPAK
Sbjct: 1 MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPESPAK 60
Query: 61 LSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRY 120
LSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRY
Sbjct: 61 LSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRY 120
Query: 121 EGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLS 180
EGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLS
Sbjct: 121 EGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLS 180
Query: 181 PSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS 220
PSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
Sbjct: 181 PSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS 220
>gi|32526915 StAR-related lipid transfer protein 5 [Homo sapiens]
Length = 213
Score = 142 bits (358), Expect = 2e-34
Identities = 68/201 (33%), Positives = 115/201 (57%), Gaps = 2/201 (0%)
Query: 6 IAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPESPAKLSDFL 65
+++ A+++L Y RDT+GWK+ + ++VS + S +F GNLYR EGI+ + ++ D +
Sbjct: 9 MSEAVAEKMLQYRRDTAGWKICREGNGVSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDCV 68
Query: 66 YQT--GDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRYEGN 123
G R+ WD+++ + ++ I + T T S A+ ISPRDF+DLV +KRYE
Sbjct: 69 KPAVGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDG 128
Query: 124 MNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLSPSI 183
++ V+ P PP ++RG+NHPCG C P+ P + LV F T++ G L ++
Sbjct: 129 TISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGYLPQNV 188
Query: 184 IEKTMPSNLVNFILNAKDGIK 204
++ P ++ F N + +K
Sbjct: 189 VDSFFPRSMTRFYANLQKAVK 209
>gi|21040247 StAR-related lipid transfer (START) domain containing 4
[Homo sapiens]
Length = 205
Score = 112 bits (279), Expect = 3e-25
Identities = 58/195 (29%), Positives = 103/195 (52%), Gaps = 4/195 (2%)
Query: 2 DFKAIAQQTAQEVLGYNR-DTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPESPAK 60
D + A + ++ Y+ + W+V K +K +TV K S +F+G LY+ +G+I +
Sbjct: 6 DVASFATKLKNTLIQYHSIEEDKWRVAKKTKDVTVWRKPSEEFNGYLYKAQGVIDDLVYS 65
Query: 61 LSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRY 120
+ D + R+ WD + +++ + + + T ISPR+F+D Y Y
Sbjct: 66 IIDHIRPGPCRLDWDSLMTSLDILENFEENCCVMRYTTAGQLWNIISPREFVDFSYTVGY 125
Query: 121 EGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLS 180
+ + + S+D+ E P ++RGYNHPCG+ C P+++NP S L ++QT++RG +
Sbjct: 126 KEGL-LSCGISLDWDEKRPE--FVRGYNHPCGWFCVPLKDNPNQSLLTGYIQTDLRGMIP 182
Query: 181 PSIIEKTMPSNLVNF 195
S ++ M S L NF
Sbjct: 183 QSAVDTAMASTLTNF 197
>gi|31543657 StAR-related lipid transfer (START) domain containing 3
[Homo sapiens]
Length = 445
Score = 78.2 bits (191), Expect = 5e-15
Identities = 44/182 (24%), Positives = 88/182 (48%), Gaps = 4/182 (2%)
Query: 24 WKVVKTSKKITVSSKASRKFHGNLYRVEGIIPESPAKL--SDFLYQTGDRITWDKSLQVY 81
WK K ++ FHG + ++ +P PA+L + + Q + W+K++
Sbjct: 259 WKFEKNNEYGDTVYTIEVPFHGKTFILKTFLP-CPAELVYQEVILQPERMVLWNKTVTAC 317
Query: 82 NMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRYEGNMNIISSKSVDFPEYPPSS 141
++ R++ +T I + ++ A G +SPRDF+++ I+R + S + PP+
Sbjct: 318 QILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRY-LSSGIATSHSAKPPTH 376
Query: 142 NYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLSPSIIEKTMPSNLVNFILNAKD 201
Y+RG N P GF+ NP V + T+++G+L +I +++ + + F + +
Sbjct: 377 KYVRGENGPGGFIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQ 436
Query: 202 GI 203
I
Sbjct: 437 RI 438
>gi|56243551 steroidogenic acute regulatory protein isoform 1 [Homo
sapiens]
Length = 285
Score = 77.8 bits (190), Expect = 7e-15
Identities = 49/208 (23%), Positives = 100/208 (48%), Gaps = 6/208 (2%)
Query: 8 QQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFH--GNLYRVEGIIPESPAKLSDFL 65
++ Q+ LG + GWK K S++ S+ G ++R+E ++ + +L + L
Sbjct: 80 EEAMQKALGILSNQEGWK--KESQQDNGDKVMSKVVPDVGKVFRLEVVVDQPMERLYEEL 137
Query: 66 YQTGDRI-TWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRYEGNM 124
+ + + W+ +++ ++ +I DTFI H + A + PRDF+ + KR G+
Sbjct: 138 VERMEAMGEWNPNVKEIKVLQKIGKDTFITHELAAEAAGNLVGPRDFVSVRCAKR-RGST 196
Query: 125 NIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLSPSII 184
+++ + DF P IR + P V P+ +P+ +KL + +++G L SII
Sbjct: 197 CVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKSII 256
Query: 185 EKTMPSNLVNFILNAKDGIKAHRTPSRR 212
+ + V+F + + +++H R
Sbjct: 257 NQVLSQTQVDFANHLRKRLESHPASEAR 284
>gi|56117848 steroidogenic acute regulatory protein isoform 2 [Homo
sapiens]
Length = 267
Score = 55.8 bits (133), Expect = 3e-08
Identities = 43/208 (20%), Positives = 92/208 (44%), Gaps = 24/208 (11%)
Query: 8 QQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFH--GNLYRVEGIIPESPAKLSDFL 65
++ Q+ LG + GWK K S++ S+ G ++R+E ++ + +L + L
Sbjct: 80 EEAMQKALGILSNQEGWK--KESQQDNGDKVMSKVVPDVGKVFRLEVVVDQPMERLYEEL 137
Query: 66 YQTGDRI-TWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRYEGNM 124
+ + + W+ +++ ++ +I PRDF+ + KR G+
Sbjct: 138 VERMEAMGEWNPNVKEIKVLQKIGG------------------PRDFVSVRCAKR-RGST 178
Query: 125 NIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLSPSII 184
+++ + DF P IR + P V P+ +P+ +KL + +++G L SII
Sbjct: 179 CVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKSII 238
Query: 185 EKTMPSNLVNFILNAKDGIKAHRTPSRR 212
+ + V+F + + +++H R
Sbjct: 239 NQVLSQTQVDFANHLRKRLESHPASEAR 266
>gi|151301035 START domain containing 7 [Homo sapiens]
Length = 370
Score = 42.0 bits (97), Expect = 4e-04
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 18 NRDTSG----WKVVKTSKKITVSSKASRKFHGNLYRVEGIIPE-SPAKLSDFLYQTGDRI 72
N D+ G W++V K + + H YRV G + +P + + T R
Sbjct: 131 NEDSEGKEQRWEMVMDKKHFKLWRRPITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYRK 190
Query: 73 TWDKSLQVYNMVHR-IDSDTFICHTITQSFAVGSISPRDFIDLVYIKRY----EGNMNII 127
WD + ++ R + S + + H +T P D VY++RY E NM ++
Sbjct: 191 KWDALVIKLEVIERDVVSGSEVLHWVTHF-----PYPMYSRDYVYVRRYSVDQENNMMVL 245
Query: 128 SSKSVDFPEYPPSSNYIRGYNHPCGFVCSP 157
S++V+ P P S ++R ++ V P
Sbjct: 246 VSRAVEHPSVPESPEFVRVRSYESQMVIRP 275
>gi|22165400 thioesterase, adipose associated isoform BFIT2 [Homo
sapiens]
Length = 594
Score = 40.4 bits (93), Expect = 0.001
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 48 YRVEGIIPESPAKLSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSIS 107
+ +E ++ A+ L R WDK + +V ++D D I H +T G
Sbjct: 426 FHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDEDDAIYH-VTSPALGGHTK 484
Query: 108 PRDFIDLVYIKR--YEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGF 153
P+DF+ L ++ G+ +I+ +SV P + + Y RG GF
Sbjct: 485 PQDFVILASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGF 532
>gi|22165355 thioesterase, adipose associated isoform BFIT1 [Homo
sapiens]
Length = 607
Score = 40.4 bits (93), Expect = 0.001
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 48 YRVEGIIPESPAKLSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSIS 107
+ +E ++ A+ L R WDK + +V ++D D I H +T G
Sbjct: 426 FHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDEDDAIYH-VTSPALGGHTK 484
Query: 108 PRDFIDLVYIKR--YEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGF 153
P+DF+ L ++ G+ +I+ +SV P + + Y RG GF
Sbjct: 485 PQDFVILASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGF 532
>gi|18640736 acyl-CoA thioesterase 12 [Homo sapiens]
Length = 555
Score = 37.7 bits (86), Expect = 0.008
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 23 GWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPESPAKLS-DFLYQTGDRITWDKSLQVY 81
GW+V T +KI + + H L SPA L+ L R WD
Sbjct: 367 GWEVTSTVEKIKIYTLEE---HDVLSVWVEKHVGSPAHLAYRLLSDFTKRPLWDPHFVSC 423
Query: 82 NMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKR--YEGNMNIISSKSVDFPEYPP 139
++ + D + H + P+D + LV ++ +GN ++ KSV P PP
Sbjct: 424 EVIDWVSEDDQLYHITCP--ILNDDKPKDLVVLVSRRKPLKDGNTYTVAVKSVILPSVPP 481
Query: 140 SSNYIRGYNHPCGFVCSPMEEN 161
S YIR GF+ ++ N
Sbjct: 482 SPQYIRSEIICAGFLIHAIDSN 503
>gi|116812600 START domain containing 10 [Homo sapiens]
Length = 291
Score = 32.7 bits (73), Expect = 0.25
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 33/197 (16%)
Query: 2 DFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKA---SRKFHGNLYRVEGIIPESP 58
DF++ + EV GW + + ++V +A R H R+E + P
Sbjct: 29 DFRSFRSECEAEV--------GWNLTYSRAGVSVWVQAVEMDRTLHKIKCRMECC--DVP 78
Query: 59 AK-LSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSIS-----PRDFI 112
A+ L D L+ R WD ++ +TF +T + VG S P
Sbjct: 79 AETLYDVLHDIEYRKKWDSNV----------IETFDIARLTVNADVGYYSWRCPKPLKNR 128
Query: 113 DLVYIKRY--EGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMF 170
D++ ++ + G II + SV P+YPP + +R + G++ P +
Sbjct: 129 DVITLRSWLPMGADYIIMNYSVKHPKYPPRKDLVRAVSIQTGYLI--QSTGPKSCVITYL 186
Query: 171 VQTEMRGKLSPSIIEKT 187
Q + +G L ++ K+
Sbjct: 187 AQVDPKGSLPKWVVNKS 203
>gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo
sapiens]
Length = 1246
Score = 27.7 bits (60), Expect = 8.0
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 151 CGFVCSPMEENPAYSKLVMFVQTEMRGKLSPSIIEKTMPSN-LVNFILNAKDGIKAHRTP 209
C + C P EE +KL V T ++ +P + + + SN +++ + K+GIK HRT
Sbjct: 947 CIWYCIPAEEE---NKLEDVVHTLLQANGTPGL--QMLESNVMISPEVLCKEGIKVHRTV 1001
Query: 210 SRRG 213
+ G
Sbjct: 1002 QQSG 1005
>gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]
Length = 1137
Score = 27.7 bits (60), Expect = 8.0
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 27 VKTSKKITVSSKASRKFHGNLYRVEGIIPESPAKLSDFLYQTGDRITWDKSLQVYNMVHR 86
VKT ++ KA KFHG++Y + + SP L + L + R+ + K+ +VH
Sbjct: 240 VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSP--LREKLEEQFKRLLFQKAFNSQQLVHV 297
Query: 87 IDSDTFICH 95
+ F H
Sbjct: 298 TVINLFQLH 306
>gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]
Length = 1049
Score = 27.7 bits (60), Expect = 8.0
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 27 VKTSKKITVSSKASRKFHGNLYRVEGIIPESPAKLSDFLYQTGDRITWDKSLQVYNMVHR 86
VKT ++ KA KFHG++Y + + SP L + L + R+ + K+ +VH
Sbjct: 198 VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSP--LREKLEEQFKRLLFQKAFNSQQLVHV 255
Query: 87 IDSDTFICH 95
+ F H
Sbjct: 256 TVINLFQLH 264
>gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]
Length = 1091
Score = 27.7 bits (60), Expect = 8.0
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 27 VKTSKKITVSSKASRKFHGNLYRVEGIIPESPAKLSDFLYQTGDRITWDKSLQVYNMVHR 86
VKT ++ KA KFHG++Y + + SP L + L + R+ + K+ +VH
Sbjct: 240 VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSP--LREKLEEQFKRLLFQKAFNSQQLVHV 297
Query: 87 IDSDTFICH 95
+ F H
Sbjct: 298 TVINLFQLH 306
>gi|30089954 H326 [Homo sapiens]
Length = 597
Score = 27.7 bits (60), Expect = 8.0
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 116 YIKRYEGNMNIISSKSVDFPEYPPSSNYI 144
Y+KRY+G+ N + K V+F Y P S ++
Sbjct: 424 YVKRYKGHRNNATVKGVNF--YGPKSEFV 450
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,189,839
Number of Sequences: 37866
Number of extensions: 342313
Number of successful extensions: 653
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 16
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.