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Search of human proteins with 209529678
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209529678 sarcospan isoform 2 [Homo sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209529678 sarcospan isoform 2 [Homo sapiens] 288 8e-79
gi|16933561 sarcospan isoform 1 [Homo sapiens] 288 8e-79
gi|23238234 membrane-spanning 4-domains, subfamily A, member 6A ... 29 1.4
gi|23238238 membrane-spanning 4-domains, subfamily A, member 6A ... 29 1.4
gi|73611920 phosphatidic acid phosphatase type 2 domain containi... 28 1.9
gi|11545887 neuropeptide FF receptor 1 [Homo sapiens] 28 1.9
gi|33636722 plasticity related gene 1 [Homo sapiens] 27 7.1
gi|119120894 Dmx-like 2 [Homo sapiens] 26 9.3
gi|52421349 olfactory receptor, family 4, subfamily F, member 3 ... 26 9.3
gi|119943152 olfactory receptor, family 4, subfamily F, member 2... 26 9.3
gi|52627209 olfactory receptor, family 4, subfamily F, member 16... 26 9.3
gi|78190498 secreted modular calcium-binding protein 1 isoform 1... 26 9.3
gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens] 26 9.3
gi|11545873 secreted modular calcium-binding protein 1 isoform 2... 26 9.3
gi|53933274 olfactory receptor, family 4, subfamily F, member 21... 26 9.3
>gi|209529678 sarcospan isoform 2 [Homo sapiens]
Length = 140
Score = 288 bits (738), Expect = 8e-79
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MLCVSYQVDERTCIQFSMKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQ 60
MLCVSYQVDERTCIQFSMKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQ
Sbjct: 1 MLCVSYQVDERTCIQFSMKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQ 60
Query: 61 CKLPSSEPLSRTFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQV 120
CKLPSSEPLSRTFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQV
Sbjct: 61 CKLPSSEPLSRTFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQV 120
Query: 121 FYVGVRICSLTASEGPQQKI 140
FYVGVRICSLTASEGPQQKI
Sbjct: 121 FYVGVRICSLTASEGPQQKI 140
>gi|16933561 sarcospan isoform 1 [Homo sapiens]
Length = 243
Score = 288 bits (738), Expect = 8e-79
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MLCVSYQVDERTCIQFSMKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQ 60
MLCVSYQVDERTCIQFSMKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQ
Sbjct: 104 MLCVSYQVDERTCIQFSMKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQ 163
Query: 61 CKLPSSEPLSRTFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQV 120
CKLPSSEPLSRTFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQV
Sbjct: 164 CKLPSSEPLSRTFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQV 223
Query: 121 FYVGVRICSLTASEGPQQKI 140
FYVGVRICSLTASEGPQQKI
Sbjct: 224 FYVGVRICSLTASEGPQQKI 243
>gi|23238234 membrane-spanning 4-domains, subfamily A, member 6A
isoform 2 [Homo sapiens]
Length = 225
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 58 SCQCKLPSSEPLSRTFV---YRD---VTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACF 111
S QC+L + +R++V Y D TDC + + L + +I L+ + +L
Sbjct: 146 SLQCELDKNNIPTRSYVSYFYHDSLYTTDCYTAKASLAGTLSLMLICTLLEFCLAVLTAV 205
Query: 112 VMWKHRYQVF 121
+ WK Y F
Sbjct: 206 LRWKQAYSDF 215
>gi|23238238 membrane-spanning 4-domains, subfamily A, member 6A
isoform 1 [Homo sapiens]
Length = 248
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 58 SCQCKLPSSEPLSRTFV---YRD---VTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACF 111
S QC+L + +R++V Y D TDC + + L + +I L+ + +L
Sbjct: 146 SLQCELDKNNIPTRSYVSYFYHDSLYTTDCYTAKASLAGTLSLMLICTLLEFCLAVLTAV 205
Query: 112 VMWKHRYQVF 121
+ WK Y F
Sbjct: 206 LRWKQAYSDF 215
>gi|73611920 phosphatidic acid phosphatase type 2 domain containing
1A [Homo sapiens]
Length = 271
Score = 28.5 bits (62), Expect = 1.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 72 TFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVG 124
TF C + +G K + L IL L C ++ L+ +KH +Q +VG
Sbjct: 158 TFYLAGKLHCFTESGRGKSWRLCAAILPLYCAMMIALSRMCDYKHHWQDSFVG 210
>gi|11545887 neuropeptide FF receptor 1 [Homo sapiens]
Length = 430
Score = 28.5 bits (62), Expect = 1.9
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 65 SSEPLSRTFVYRDVTDCTSVTGTF---------KLFLLIQMILNLVCGLVCLLACFVMWK 115
SS PLS+ + T T++T + +F++ ++ L+C + L CF++ K
Sbjct: 11 SSWPLSQNGTNTEATPATNLTFSSYYQHTSPVAAMFIVAYALIFLLCMVGNTLVCFIVLK 70
Query: 116 HRYQVFYVGVRICSLTASE 134
+R+ + I +L S+
Sbjct: 71 NRHMHTVTNMFILNLAVSD 89
>gi|33636722 plasticity related gene 1 [Homo sapiens]
Length = 763
Score = 26.6 bits (57), Expect = 7.1
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 54 TTLDSCQCKLPSSEPLSRTF--VYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACF 111
T ++S + PS F VY + +++T + KL + + ++CG++C L
Sbjct: 239 TVINSGRKSFPSQHATLAAFAAVYVSMYFNSTLTDSSKLLKPLLVFTFIICGIICGLTRI 298
Query: 112 VMWKHRYQVFYVGVRI 127
+K+ Y G I
Sbjct: 299 TQYKNHPVDVYCGFLI 314
>gi|119120894 Dmx-like 2 [Homo sapiens]
Length = 3036
Score = 26.2 bits (56), Expect = 9.3
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 70 SRTFVYRDVTDCTSVTGTFKLFLLIQMILN--LVCGLVCLLACFVMWKH 116
SR + R + +SV GT L + + + + LV G+ C + + WKH
Sbjct: 1228 SRWVLLRSIDLVSSVDGTPSLPVSLSWVRDGILVVGMDCEMHVYAQWKH 1276
>gi|52421349 olfactory receptor, family 4, subfamily F, member 3
[Homo sapiens]
Length = 312
Score = 26.2 bits (56), Expect = 9.3
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 20 LLYFLLSALGLTVCVLAVAFA---AHHYSQLT-----QFTCETTLDSCQCKLPSSEPLSR 71
L Y + + + + LAVA+ +H QL F LDS C LP L+
Sbjct: 130 LHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLAFCGPNVLDSFYCDLPRLLRLAC 189
Query: 72 TFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKH 116
T YR T +G F+ + L+ V +L F +WKH
Sbjct: 190 TDTYRLQFMVTVNSG----FICVGTFFILLISYVFIL--FTVWKH 228
>gi|119943152 olfactory receptor, family 4, subfamily F, member 29
[Homo sapiens]
Length = 312
Score = 26.2 bits (56), Expect = 9.3
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 20 LLYFLLSALGLTVCVLAVAFA---AHHYSQLT-----QFTCETTLDSCQCKLPSSEPLSR 71
L Y + + + + LAVA+ +H QL F LDS C LP L+
Sbjct: 130 LHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLAFCGPNVLDSFYCDLPRLLRLAC 189
Query: 72 TFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKH 116
T YR T +G F+ + L+ V +L F +WKH
Sbjct: 190 TDTYRLQFMVTVNSG----FICVGTFFILLISYVFIL--FTVWKH 228
>gi|52627209 olfactory receptor, family 4, subfamily F, member 16
[Homo sapiens]
Length = 312
Score = 26.2 bits (56), Expect = 9.3
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 20 LLYFLLSALGLTVCVLAVAFA---AHHYSQLT-----QFTCETTLDSCQCKLPSSEPLSR 71
L Y + + + + LAVA+ +H QL F LDS C LP L+
Sbjct: 130 LHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLAFCGPNVLDSFYCDLPRLLRLAC 189
Query: 72 TFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKH 116
T YR T +G F+ + L+ V +L F +WKH
Sbjct: 190 TDTYRLQFMVTVNSG----FICVGTFFILLISYVFIL--FTVWKH 228
>gi|78190498 secreted modular calcium-binding protein 1 isoform 1
[Homo sapiens]
Length = 435
Score = 26.2 bits (56), Expect = 9.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 48 TQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCT-SVT 85
TQ C T C C P +P+S + V C+ SVT
Sbjct: 125 TQVQCHTYTGYCWCVTPDGKPISGSSVQNKTPVCSGSVT 163
>gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens]
Length = 1918
Score = 26.2 bits (56), Expect = 9.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 110 CFVMWKHRYQVFYVGVRICSLTASEGP 136
CF WKH + ++G+ + S T S P
Sbjct: 773 CFQHWKHSMMLEWLGLGVGSFTQSVSP 799
>gi|11545873 secreted modular calcium-binding protein 1 isoform 2
[Homo sapiens]
Length = 434
Score = 26.2 bits (56), Expect = 9.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 48 TQFTCETTLDSCQCKLPSSEPLSRTFVYRDVTDCT-SVT 85
TQ C T C C P +P+S + V C+ SVT
Sbjct: 125 TQVQCHTYTGYCWCVTPDGKPISGSSVQNKTPVCSGSVT 163
>gi|53933274 olfactory receptor, family 4, subfamily F, member 21
[Homo sapiens]
Length = 312
Score = 26.2 bits (56), Expect = 9.3
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 20 LLYFLLSALGLTVCVLAVAFA---AHHYSQLT-----QFTCETTLDSCQCKLPSSEPLSR 71
L Y + + + + LAVA+ +H QL F LDS C LP L+
Sbjct: 130 LHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLAFCGPNVLDSFYCDLPRLLRLAC 189
Query: 72 TFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKH 116
T YR T +G F+ + L+ V +L F +WKH
Sbjct: 190 TDTYRLQFMVTVNSG----FICVGTFFILLISYVFIL--FTVWKH 228
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.332 0.139 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,121,942
Number of Sequences: 37866
Number of extensions: 186260
Number of successful extensions: 722
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 15
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.