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Search of human proteins with 208973226
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208973226 sarcoglycan, alpha isoform 2 precursor [Homo
sapiens]
(263 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208973226 sarcoglycan, alpha isoform 2 precursor [Homo sapiens] 540 e-154
gi|4506911 sarcoglycan, alpha isoform 1 precursor [Homo sapiens] 403 e-113
gi|150378454 sarcoglycan, epsilon isoform 1 [Homo sapiens] 151 5e-37
gi|150378535 sarcoglycan, epsilon isoform 3 [Homo sapiens] 151 5e-37
gi|10835047 sarcoglycan, epsilon isoform 2 [Homo sapiens] 151 5e-37
gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo ... 31 0.96
gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens] 31 1.3
gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens] 31 1.3
gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens] 31 1.3
gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens] 31 1.3
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 30 2.8
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 30 2.8
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 30 2.8
gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens] 30 2.8
gi|189181750 human immunodeficiency virus type I enhancer bindin... 29 3.7
gi|116089331 human immunodeficiency virus type I enhancer bindin... 29 3.7
gi|239755199 PREDICTED: hypothetical protein [Homo sapiens] 28 6.2
gi|42794622 zinc finger protein 784 [Homo sapiens] 28 6.2
gi|187608615 tyrosine kinase 2 [Homo sapiens] 28 8.2
gi|189027090 cytoplasmic polyadenylation element binding protein... 28 8.2
>gi|208973226 sarcoglycan, alpha isoform 2 precursor [Homo sapiens]
Length = 263
Score = 540 bits (1391), Expect = e-154
Identities = 263/263 (100%), Positives = 263/263 (100%)
Query: 1 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI 60
MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI
Sbjct: 1 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI 60
Query: 61 TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL 120
TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL
Sbjct: 61 TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL 120
Query: 121 VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD 180
VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD
Sbjct: 121 VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD 180
Query: 181 RGGRVPLPIEGRKEGLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFN 240
RGGRVPLPIEGRKEGLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFN
Sbjct: 181 RGGRVPLPIEGRKEGLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFN 240
Query: 241 VHTGERLPPRVDSAQVPLILDQH 263
VHTGERLPPRVDSAQVPLILDQH
Sbjct: 241 VHTGERLPPRVDSAQVPLILDQH 263
>gi|4506911 sarcoglycan, alpha isoform 1 precursor [Homo sapiens]
Length = 387
Score = 403 bits (1036), Expect = e-113
Identities = 195/196 (99%), Positives = 196/196 (100%)
Query: 1 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI 60
MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI
Sbjct: 1 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI 60
Query: 61 TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL 120
TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL
Sbjct: 61 TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL 120
Query: 121 VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD 180
VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD
Sbjct: 121 VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD 180
Query: 181 RGGRVPLPIEGRKEGL 196
RGGRVPLPIEGRKEG+
Sbjct: 181 RGGRVPLPIEGRKEGV 196
Score = 144 bits (362), Expect = 1e-34
Identities = 71/73 (97%), Positives = 72/73 (98%), Gaps = 1/73 (1%)
Query: 192 RKEG-LKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPPR 250
R+EG LKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPPR
Sbjct: 315 RREGRLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPPR 374
Query: 251 VDSAQVPLILDQH 263
VDSAQVPLILDQH
Sbjct: 375 VDSAQVPLILDQH 387
>gi|150378454 sarcoglycan, epsilon isoform 1 [Homo sapiens]
Length = 462
Score = 151 bits (382), Expect = 5e-37
Identities = 80/176 (45%), Positives = 110/176 (62%), Gaps = 10/176 (5%)
Query: 28 LHPLVGRVFVHTLDHETFLS------LPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQR 81
++P G +FVH L+ E F P ++ P IT++ +L G+PD P WLRY QR
Sbjct: 50 VYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDP---ITFNTNLMGYPDRPGWLRYIQR 106
Query: 82 SPHHPGFLYGSATPEDRGLQ-VIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLV 140
+P+ G LYGS T E+ G +IE+TAYNR +F+T R L++ I E LPYQAEF +
Sbjct: 107 TPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFI 166
Query: 141 RSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGL 196
++ + EE+L S FL A+ +W+P L +N+TSALDRGGRVPLPI KEG+
Sbjct: 167 KNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGV 222
Score = 69.7 bits (169), Expect = 2e-12
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 192 RKEGL-KRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPP- 249
R+EG+ KR++ T DIQ+VHH I +T+ELR M+ +RE+ PLSTLP+F+ TGE +PP
Sbjct: 342 RREGVEKRNMQTPDIQLVHHSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPL 401
Query: 250 ---RVDSAQVPLILDQ 262
DS +PL+ Q
Sbjct: 402 HTDNYDSTNMPLMQTQ 417
>gi|150378535 sarcoglycan, epsilon isoform 3 [Homo sapiens]
Length = 451
Score = 151 bits (382), Expect = 5e-37
Identities = 80/176 (45%), Positives = 110/176 (62%), Gaps = 10/176 (5%)
Query: 28 LHPLVGRVFVHTLDHETFLS------LPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQR 81
++P G +FVH L+ E F P ++ P IT++ +L G+PD P WLRY QR
Sbjct: 50 VYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDP---ITFNTNLMGYPDRPGWLRYIQR 106
Query: 82 SPHHPGFLYGSATPEDRGLQ-VIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLV 140
+P+ G LYGS T E+ G +IE+TAYNR +F+T R L++ I E LPYQAEF +
Sbjct: 107 TPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFI 166
Query: 141 RSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGL 196
++ + EE+L S FL A+ +W+P L +N+TSALDRGGRVPLPI KEG+
Sbjct: 167 KNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGV 222
Score = 58.5 bits (140), Expect = 6e-09
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 205 IQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPP----RVDSAQVPLIL 260
IQ+VHH I +T+ELR M+ +RE+ PLSTLP+F+ TGE +PP DS +PL+
Sbjct: 347 IQLVHHSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNYDSTNMPLMQ 406
Query: 261 DQ 262
Q
Sbjct: 407 TQ 408
>gi|10835047 sarcoglycan, epsilon isoform 2 [Homo sapiens]
Length = 437
Score = 151 bits (382), Expect = 5e-37
Identities = 80/176 (45%), Positives = 110/176 (62%), Gaps = 10/176 (5%)
Query: 28 LHPLVGRVFVHTLDHETFLS------LPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQR 81
++P G +FVH L+ E F P ++ P IT++ +L G+PD P WLRY QR
Sbjct: 50 VYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDP---ITFNTNLMGYPDRPGWLRYIQR 106
Query: 82 SPHHPGFLYGSATPEDRGLQ-VIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLV 140
+P+ G LYGS T E+ G +IE+TAYNR +F+T R L++ I E LPYQAEF +
Sbjct: 107 TPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFI 166
Query: 141 RSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGL 196
++ + EE+L S FL A+ +W+P L +N+TSALDRGGRVPLPI KEG+
Sbjct: 167 KNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGV 222
Score = 69.7 bits (169), Expect = 2e-12
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 192 RKEGL-KRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPP- 249
R+EG+ KR++ T DIQ+VHH I +T+ELR M+ +RE+ PLSTLP+F+ TGE +PP
Sbjct: 342 RREGVEKRNMQTPDIQLVHHSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPL 401
Query: 250 ---RVDSAQVPLILDQ 262
DS +PL+ Q
Sbjct: 402 HTDNYDSTNMPLMQTQ 417
>gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo
sapiens]
Length = 475
Score = 31.2 bits (69), Expect = 0.96
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 27 TLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQRSPHHP 86
++HP + + +H H + + P H + P++H+ H H HP + ++ + +HP
Sbjct: 67 SIHPPI-HLHIHPPIHPS-IHPPMHSSTHPSIHLFIHIHSSTHPSIHPFIHPSVHPSNHP 124
>gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens]
Length = 761
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 146 EEVLPSTPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGLKRDLATSDI 205
+ LP RF S G L P EL+ N+ S G +P +E + K DL ++
Sbjct: 573 DSALPPQRQDRFCSNSGRLSGPAELRSFNMPSLDKMDGSMPSEMESSRNDTKDDLGNLNV 632
>gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens]
Length = 804
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 146 EEVLPSTPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGLKRDLATSDI 205
+ LP RF S G L P EL+ N+ S G +P +E + K DL ++
Sbjct: 616 DSALPPQRQDRFCSNSGRLSGPAELRSFNMPSLDKMDGSMPSEMESSRNDTKDDLGNLNV 675
>gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens]
Length = 775
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 146 EEVLPSTPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGLKRDLATSDI 205
+ LP RF S G L P EL+ N+ S G +P +E + K DL ++
Sbjct: 587 DSALPPQRQDRFCSNSGRLSGPAELRSFNMPSLDKMDGSMPSEMESSRNDTKDDLGNLNV 646
>gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens]
Length = 792
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 146 EEVLPSTPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGLKRDLATSDI 205
+ LP RF S G L P EL+ N+ S G +P +E + K DL ++
Sbjct: 604 DSALPPQRQDRFCSNSGRLSGPAELRSFNMPSLDKMDGSMPSEMESSRNDTKDDLGNLNV 663
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 29.6 bits (65), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 9 LPTHPHLPTHPHLPTHPHLPTHPHLP 34
Score = 29.6 bits (65), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 15 LPTHPHLPTHPHLPTHPHLPTHPHLP 40
Score = 29.6 bits (65), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 21 LPTHPHLPTHPHLPTHPHLPTHPHLP 46
Score = 29.3 bits (64), Expect = 3.7
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLPRWLRYT-------QRSPHHP 86
LP H +P H+ H HL HP + + R + Q + HHP
Sbjct: 27 LPTHPHLPTHPHLPTHPHLPTHPMMSKETRQSKLAEAKEQLTDHHP 72
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 29.6 bits (65), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 9 LPTHPHLPTHPHLPTHPHLPTHPHLP 34
Score = 29.6 bits (65), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 15 LPTHPHLPTHPHLPTHPHLPTHPHLP 40
Score = 29.6 bits (65), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 21 LPTHPHLPTHPHLPTHPHLPTHPHLP 46
Score = 29.3 bits (64), Expect = 3.7
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLPRWLRYT-------QRSPHHP 86
LP H +P H+ H HL HP + + R + Q + HHP
Sbjct: 27 LPTHPHLPTHPHLPTHPHLPTHPMMSKETRQSKLAEAKEQLTDHHP 72
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 29.6 bits (65), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 9 LPTHPHLPTHPHLPTHPHLPTHPHLP 34
Score = 29.3 bits (64), Expect = 3.7
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLPRWLRYT-------QRSPHHP 86
LP H +P H+ H HL HP + + R + Q + HHP
Sbjct: 15 LPTHPHLPTHPHLPTHPHLPTHPMMSKETRQSKLAEAKEQLTDHHP 60
>gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens]
Length = 950
Score = 29.6 bits (65), Expect = 2.8
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 129 GPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSAL-----DRGG 183
GP +Q + R AE +LP +R L ++P + Q+L DRGG
Sbjct: 871 GPPPLFQQQRFDRGVGAEPLLPW---NRMLQTQNAAFQPNQYQMLAGPGGYPPRRDDRGG 927
Query: 184 RVPLPIEGRK 193
R P EGRK
Sbjct: 928 RQGYPREGRK 937
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 29.3 bits (64), Expect = 3.7
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 184 RVPLPIEGRKEGLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLP 237
R P P G + G +R + +I ++ H + ++ L Q + +PL+ P
Sbjct: 776 RTPKPGSGSESGKERRTTSKEISVIQHTSSFEKSDSLEQPSGLEGEDKPLAQFP 829
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 29.3 bits (64), Expect = 3.7
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 184 RVPLPIEGRKEGLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLP 237
R P P G + G +R + +I ++ H + ++ L Q + +PL+ P
Sbjct: 776 RTPKPGSGSESGKERRTTSKEISVIQHTSSFEKSDSLEQPSGLEGEDKPLAQFP 829
>gi|239755199 PREDICTED: hypothetical protein [Homo sapiens]
Length = 279
Score = 28.5 bits (62), Expect = 6.2
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 29 HPLVGRVFVHTLDHETFLSLPEHVAVPPAVHITYH--AHLQGHPDLPRWLRYTQRSPHHP 86
HP + H L H P H + P++H T H AH HP + SP HP
Sbjct: 148 HPSI-HASTHPLIHHPSTHPPTHPSTHPSIHPTIHPRAHPPIHPSI--------HSPTHP 198
>gi|42794622 zinc finger protein 784 [Homo sapiens]
Length = 323
Score = 28.5 bits (62), Expect = 6.2
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 230 PRPLSTLPMFNVHTGER-----LPPRVDSAQVPLILDQH 263
P P S +++HTGER L PR A PL+ QH
Sbjct: 111 PGPASLRAHYSLHTGERPYRCALCPRAFKALAPLLRHQH 149
>gi|187608615 tyrosine kinase 2 [Homo sapiens]
Length = 1187
Score = 28.1 bits (61), Expect = 8.2
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 152 TPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLP 188
+P ++FL +G G++ +L +T L+RG R+P P
Sbjct: 1103 SPPTKFLELIG--IAQGQMTVLRLTELLERGERLPRP 1137
>gi|189027090 cytoplasmic polyadenylation element binding protein 4
[Homo sapiens]
Length = 729
Score = 28.1 bits (61), Expect = 8.2
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 45 FLSLPEHVAV-----------PPAVHITYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSA 93
F + P HV+ P + H +H H Q H + R + SPH P F + +A
Sbjct: 207 FQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNA 266
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,252,227
Number of Sequences: 37866
Number of extensions: 547802
Number of successful extensions: 1232
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1194
Number of HSP's gapped (non-prelim): 34
length of query: 263
length of database: 18,247,518
effective HSP length: 100
effective length of query: 163
effective length of database: 14,460,918
effective search space: 2357129634
effective search space used: 2357129634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.