Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 208431817
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208431817 protein kinase-like protein SgK493 [Homo sapiens]
(493 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208431817 protein kinase-like protein SgK493 [Homo sapiens] 1028 0.0
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 54 3e-07
gi|66932999 testis-specific protein kinase 1 [Homo sapiens] 52 2e-06
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 50 4e-06
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 49 8e-06
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 49 1e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 49 1e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 48 2e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 48 2e-05
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 47 3e-05
gi|22027541 programmed cell death 7 [Homo sapiens] 47 3e-05
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 47 4e-05
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 47 5e-05
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 47 5e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 46 7e-05
gi|83977450 discoidin domain receptor family, member 1 isoform a... 46 7e-05
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 46 7e-05
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 46 7e-05
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 46 9e-05
gi|118498339 EMI domain containing 2 [Homo sapiens] 46 9e-05
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 45 1e-04
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 45 1e-04
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 45 1e-04
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 45 1e-04
gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens] 45 1e-04
>gi|208431817 protein kinase-like protein SgK493 [Homo sapiens]
Length = 493
Score = 1028 bits (2659), Expect = 0.0
Identities = 493/493 (100%), Positives = 493/493 (100%)
Query: 1 MRRRRAAVAAGFCASFLLGSVLNVLFAPGSEPPRPGQSPEPSPAPGPGRRGGRGELARQI 60
MRRRRAAVAAGFCASFLLGSVLNVLFAPGSEPPRPGQSPEPSPAPGPGRRGGRGELARQI
Sbjct: 1 MRRRRAAVAAGFCASFLLGSVLNVLFAPGSEPPRPGQSPEPSPAPGPGRRGGRGELARQI 60
Query: 61 RARYEEVQRYSRGGPGPGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG 120
RARYEEVQRYSRGGPGPGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG
Sbjct: 61 RARYEEVQRYSRGGPGPGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG 120
Query: 121 PGSPGPGPRLGCAALRNVSGAQYMGSGYTKAVYRVRLPGGAAVALKAVDFSGHDLGSCVR 180
PGSPGPGPRLGCAALRNVSGAQYMGSGYTKAVYRVRLPGGAAVALKAVDFSGHDLGSCVR
Sbjct: 121 PGSPGPGPRLGCAALRNVSGAQYMGSGYTKAVYRVRLPGGAAVALKAVDFSGHDLGSCVR 180
Query: 181 EFGVRRGCYRLAAHKLLKEMVLLERLRHPNVLQLYGYCYQDSEDIPDTLTTITELGAPVE 240
EFGVRRGCYRLAAHKLLKEMVLLERLRHPNVLQLYGYCYQDSEDIPDTLTTITELGAPVE
Sbjct: 181 EFGVRRGCYRLAAHKLLKEMVLLERLRHPNVLQLYGYCYQDSEDIPDTLTTITELGAPVE 240
Query: 241 MIQLLQTSWEDRFRICLSLGRLLHHLAHSPLGSVTLLDFRPRQFVLVDGELKVTDLDDAR 300
MIQLLQTSWEDRFRICLSLGRLLHHLAHSPLGSVTLLDFRPRQFVLVDGELKVTDLDDAR
Sbjct: 241 MIQLLQTSWEDRFRICLSLGRLLHHLAHSPLGSVTLLDFRPRQFVLVDGELKVTDLDDAR 300
Query: 301 VEETPCAGSTDCILEFPARNFTLPCSAQGWCEGMNEKRNLYNAYRFFFTYLLPHSAPPSL 360
VEETPCAGSTDCILEFPARNFTLPCSAQGWCEGMNEKRNLYNAYRFFFTYLLPHSAPPSL
Sbjct: 301 VEETPCAGSTDCILEFPARNFTLPCSAQGWCEGMNEKRNLYNAYRFFFTYLLPHSAPPSL 360
Query: 361 RPLLDSIVNATGELAWGVDETLAQLEKVLHLYRSGQYLQNSTASSSTEYQCIPDSTIPQE 420
RPLLDSIVNATGELAWGVDETLAQLEKVLHLYRSGQYLQNSTASSSTEYQCIPDSTIPQE
Sbjct: 361 RPLLDSIVNATGELAWGVDETLAQLEKVLHLYRSGQYLQNSTASSSTEYQCIPDSTIPQE 420
Query: 421 DYRCWPSYHHGSCLLSVFNLAEAVDVCESHAQCRAFVVTNQTTWTGRQLVFFKTGWSQVV 480
DYRCWPSYHHGSCLLSVFNLAEAVDVCESHAQCRAFVVTNQTTWTGRQLVFFKTGWSQVV
Sbjct: 421 DYRCWPSYHHGSCLLSVFNLAEAVDVCESHAQCRAFVVTNQTTWTGRQLVFFKTGWSQVV 480
Query: 481 PDPNKTTYVKASG 493
PDPNKTTYVKASG
Sbjct: 481 PDPNKTTYVKASG 493
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 53.9 bits (128), Expect = 3e-07
Identities = 43/123 (34%), Positives = 53/123 (43%), Gaps = 31/123 (25%)
Query: 29 GSEPPRPGQSPEPSPAPGPGRRGGRGELARQ-------IRARYEEVQRYSRGGPGPGAGR 81
G P PG+ +P P+ PG RG G+ + + ++ R RG PGPG G
Sbjct: 1358 GEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEG- 1416
Query: 82 PERRRLMDLAPGGPGL------PRPRPPWARP--------LSDGAPGWPPAPG-PGSPGP 126
+APG PGL P P+ P P DGAPG P PG PG GP
Sbjct: 1417 -------GIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGP 1469
Query: 127 -GP 128
GP
Sbjct: 1470 RGP 1472
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/101 (31%), Positives = 34/101 (33%), Gaps = 27/101 (26%)
Query: 25 LFAPGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPER 84
L P P PGQ E PGR G G+ RG PG
Sbjct: 2237 LVGPQGSPGLPGQVGETGKPGAPGRDGASGKDG-------------DRGSPG-------- 2275
Query: 85 RRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG 125
PG PGLP P P P GAPG PG+ G
Sbjct: 2276 ------VPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKG 2310
Score = 40.4 bits (93), Expect = 0.004
Identities = 42/118 (35%), Positives = 49/118 (41%), Gaps = 22/118 (18%)
Query: 31 EPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGA-GRPERRRLMD 89
EP PGQS P G +G RG Q + ++ ++ RG PG G P
Sbjct: 2663 EPGVPGQSGAPGKEGLIGPKGDRG-FDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSA 2721
Query: 90 LAPGGPGLPRPR-------------PPWARPLSDGAPGWPPAPG----PGSPGP-GPR 129
PG PG PR PP R + GAPG P APG G PGP GPR
Sbjct: 2722 GPPGPPGSVGPRGPEGLQGQKGERGPPGERVV--GAPGVPGAPGERGEQGRPGPAGPR 2777
Score = 40.0 bits (92), Expect = 0.005
Identities = 37/111 (33%), Positives = 41/111 (36%), Gaps = 25/111 (22%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG----PG----A 79
P +P PG++ P P PG +GE RG PG PG A
Sbjct: 1270 PPGDPGLPGRTGAPGPQGPPGSATAKGE----------------RGFPGADGRPGSPGRA 1313
Query: 80 GRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRL 130
G P L G PGLP PR G G P APG G GP L
Sbjct: 1314 GNPGTPGAPGL-KGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGL 1363
Score = 39.3 bits (90), Expect = 0.008
Identities = 41/128 (32%), Positives = 48/128 (37%), Gaps = 22/128 (17%)
Query: 27 APGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEV-QRYSRGGPGPG------- 78
APG P +PG E P PG G +G+ R E ++ RG PGP
Sbjct: 1454 APGL-PGQPGSPGEQGPRGPPGAIGPKGD--RGFPGPLGEAGEKGERGPPGPAGSRGLPG 1510
Query: 79 -AGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPR---LGCAA 134
AGRP A G G P P G PG P GP GP +G A
Sbjct: 1511 VAGRPG-------AKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAG 1563
Query: 135 LRNVSGAQ 142
R +G Q
Sbjct: 1564 PRGATGVQ 1571
Score = 37.7 bits (86), Expect = 0.024
Identities = 38/114 (33%), Positives = 44/114 (38%), Gaps = 16/114 (14%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPE---- 83
P +P PG++ E PG RG GE Q E+ + S G GP R E
Sbjct: 1644 PPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQ-GDPGEDGRNGSPGSSGPKGDRGEPGPP 1702
Query: 84 --RRRLMDLAPGG--PGLPRPRPPWARPLSDGAPGWPPAPGP-------GSPGP 126
RL+D PG G P R G PG P APG G PGP
Sbjct: 1703 GPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGP 1756
Score = 37.7 bits (86), Expect = 0.024
Identities = 37/123 (30%), Positives = 45/123 (36%), Gaps = 28/123 (22%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPG--AGRPERR 85
P + G + P PG RG +G+ + RG PGP AG P +
Sbjct: 1980 PKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGK- 2038
Query: 86 RLMDLAPGGPGLP----------RPRPPWARPLS--------DGAPGWPPAPGPGSPGPG 127
PG PGLP RP R DG PG P PGP P PG
Sbjct: 2039 ------PGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGP-PG 2091
Query: 128 PRL 130
P++
Sbjct: 2092 PKV 2094
Score = 37.7 bits (86), Expect = 0.024
Identities = 39/115 (33%), Positives = 44/115 (38%), Gaps = 21/115 (18%)
Query: 28 PGSE----PPRPGQSPEPSPAPGP---------GRRGGRGELARQIRARYEEVQRYSRGG 74
PGS P P P P+ APG G +G G LA + E + RG
Sbjct: 2277 PGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVG--EPGAKGDRGL 2334
Query: 75 PGPGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG-PGP 128
PGP + E R G PG P P G G P PGSPG PGP
Sbjct: 2335 PGPRGEKGEAGRA-----GEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGP 2384
Score = 37.4 bits (85), Expect = 0.031
Identities = 34/112 (30%), Positives = 39/112 (34%), Gaps = 27/112 (24%)
Query: 35 PGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAPGG 94
PG P PG+ G RGE+ G PGP R + PG
Sbjct: 2394 PGLPGAPGVVGFPGQTGPRGEM----------------GQPGPSGERG-----LAGPPGR 2432
Query: 95 PGLPRPRPPWARPLSDGAPGWPPA------PGPGSPGPGPRLGCAALRNVSG 140
G+P P P P S G PG PG G PGP G +R G
Sbjct: 2433 EGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDG 2484
Score = 37.0 bits (84), Expect = 0.041
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 47 PGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAPGGPGLPRPRPPWAR 106
PG RG +GE R + + +G PGP + + + +PG PG P +
Sbjct: 2335 PGPRGEKGEAGRAGEPG-DPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGL 2393
Query: 107 PLSDGAP---GWPPAPGP----GSPGPGPRLGCA 133
P GAP G+P GP G PGP G A
Sbjct: 2394 PGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLA 2427
Score = 36.6 bits (83), Expect = 0.054
Identities = 34/109 (31%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 32 PPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLA 91
P G EP P G G GE +Q RG PGP G +
Sbjct: 2134 PGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQG-PRGPPGPVGGHGDPG-----P 2187
Query: 92 PGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLGCAALRNVSG 140
PG PGL P P G PG PG G GP +G SG
Sbjct: 2188 PGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSG 2236
Score = 35.4 bits (80), Expect = 0.12
Identities = 35/100 (35%), Positives = 42/100 (42%), Gaps = 20/100 (20%)
Query: 32 PPRP-GQSPEPSPA--PG-PGRRGGRGELAR--QIRARYEEVQRYSRGGPGPGAGRPERR 85
PP P G + EP PG PGR GG GE R + R E+ +R +G GP
Sbjct: 2026 PPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGP-------- 2077
Query: 86 RLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG 125
PG PG P P P +S PG + G PG
Sbjct: 2078 ------PGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPG 2111
Score = 35.4 bits (80), Expect = 0.12
Identities = 36/103 (34%), Positives = 37/103 (35%), Gaps = 20/103 (19%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGP--GAGRPERR 85
P E +PG S E A PGR G G L G PGP G P
Sbjct: 2411 PRGEMGQPGPSGERGLAGPPGREGIPGPL----------------GPPGPPGSVGPPGAS 2454
Query: 86 RLM-DLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGP-GSPGP 126
L D G GLP PR P G G P GP G GP
Sbjct: 2455 GLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGP 2497
Score = 33.9 bits (76), Expect = 0.35
Identities = 36/107 (33%), Positives = 45/107 (42%), Gaps = 23/107 (21%)
Query: 28 PGSE--PPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGAGRPER 84
PG++ P PG++ P PG +G G R + +R RG G PGA
Sbjct: 1301 PGADGRPGSPGRAGNPGTPGAPGLKGSPGLPG----PRGDPGERGPRGPKGEPGAPGQV- 1355
Query: 85 RRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAP-GP-GSPGP-GP 128
+ GPGLP + D P PP P GP G PGP GP
Sbjct: 1356 -----IGGEGPGLPGRK-------GDPGPSGPPGPRGPLGDPGPRGP 1390
Score = 33.9 bits (76), Expect = 0.35
Identities = 43/152 (28%), Positives = 47/152 (30%), Gaps = 52/152 (34%)
Query: 28 PGSEPPRPGQSPE---------PSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-- 76
P +P PG E P P PG RG GE + RG PG
Sbjct: 1732 PKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGE-------------KGDRGPPGLD 1778
Query: 77 --------PGAGRPE-----RRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG--- 120
PGA P + D PG GLP R P G PG P PG
Sbjct: 1779 GRSGLDGKPGAAGPSGPNGAAGKAGD--PGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDG 1836
Query: 121 ----------PGSPGPGPRLGCAALRNVSGAQ 142
PG PG R G SG +
Sbjct: 1837 KPGLNGKNGEPGDPGEDGRKGEKGDSGASGRE 1868
Score = 33.5 bits (75), Expect = 0.45
Identities = 34/107 (31%), Positives = 39/107 (36%), Gaps = 19/107 (17%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGAGRPERRR 86
P E PG+ P P GR G GE + G PG PG R
Sbjct: 1611 PPGEKGDPGRPGPPGPVGPRGRDGEVGE-------------KGDEGPPGDPGLPGKAGER 1657
Query: 87 LMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGP----GSPG-PGP 128
+ APG G + P DG G P + GP G PG PGP
Sbjct: 1658 GLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGP 1704
Score = 33.5 bits (75), Expect = 0.45
Identities = 37/124 (29%), Positives = 43/124 (34%), Gaps = 28/124 (22%)
Query: 28 PGSEPPRPGQSP-----EPSPAPGPGRRGGRGELARQ-IRARYEEVQRYSRGGPGPGAGR 81
PG + PR P +P P PG G G ++ E G PG G
Sbjct: 2167 PGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGET-----GPPGRGLTG 2221
Query: 82 PERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG----------------PGSPG 125
P + PG GL P+ P G G P APG PGSPG
Sbjct: 2222 PTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPG 2281
Query: 126 -PGP 128
PGP
Sbjct: 2282 LPGP 2285
Score = 33.1 bits (74), Expect = 0.59
Identities = 35/118 (29%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
P P +PG+ +P G G GE R + E+ + G G + ER
Sbjct: 1825 PPGLPGKPGEDGKPGLNGKNGEPGDPGEDGR----KGEKGDSGASGREGRDGPKGERGAP 1880
Query: 88 MDLAPGGP-GLPRPRPPWARPLSDGAPGWPPAPGP----GSPGPGPRLGCAALRNVSG 140
L P GP GLP P P G PG P GP G G G R + G
Sbjct: 1881 GILGPQGPPGLPGP----VGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRG 1934
Score = 32.0 bits (71), Expect = 1.3
Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 47 PGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAPGG-PGLPRPRPPWA 105
PG RG +G++ + R + + RG G + + D G PGL P
Sbjct: 2529 PGPRGAKGDMGER-GPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQG 2587
Query: 106 RPLSDGAPGWPPAPG-PGSPG----------PGPRLGCAALRNVSGA 141
+P + G PG P +PG G PG GPR G R V GA
Sbjct: 2588 QPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPR-GLKGERGVKGA 2633
Score = 29.3 bits (64), Expect = 8.6
Identities = 34/113 (30%), Positives = 41/113 (36%), Gaps = 27/113 (23%)
Query: 28 PGSEPPRPGQSPEPSPA-----PGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGR- 81
P P PG P P PGPG G +G + ++G PG +
Sbjct: 2077 PPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGL----------KGAKGEPGSNGDQG 2126
Query: 82 PERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG----PGSPG-PGPR 129
P+ R + G G P PR DG PG P G G PG GPR
Sbjct: 2127 PKGDRGVPGIKGDRGEPGPRG------QDGNPGLPGERGMAGPEGKPGLQGPR 2173
>gi|66932999 testis-specific protein kinase 1 [Homo sapiens]
Length = 626
Score = 51.6 bits (122), Expect = 2e-06
Identities = 52/184 (28%), Positives = 73/184 (39%), Gaps = 48/184 (26%)
Query: 107 PLSDGAPGWPPAPGPGSPGPGPRLG---------CAALRNVSG----------AQYMGSG 147
PL PG PG G PGPG G ALR+ A+ +G+G
Sbjct: 7 PLRGPGPGPGEVPGEGPPGPGGTGGGPGRGRPSSYRALRSAVSSLARVDDFHCAEKIGAG 66
Query: 148 YTKAVYRVR-LPGGAAVALKAVDFSGHDLGSCVREFGVRRGCYRLAAHKLLKEMVLLERL 206
+ VY+VR G + LK + + RG L+E+ L+ RL
Sbjct: 67 FFSEVYKVRHRQSGQVMVLK------------MNKLPSNRG-------NTLREVQLMNRL 107
Query: 207 RHPNVLQLYGYCYQDSEDIPDTLTTITELGAPVEMIQLLQT----SWEDRFRICLSLGRL 262
RHPN+L+ G C + L +TE + QLL + SW R + L + R
Sbjct: 108 RHPNILRFMGVCVHQGQ-----LHALTEYMNGGTLEQLLSSPEPLSWPVRLHLALDIARG 162
Query: 263 LHHL 266
L +L
Sbjct: 163 LRYL 166
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 50.4 bits (119), Expect = 4e-06
Identities = 37/101 (36%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 30 SEPPRPGQSPEPSPAPGPGR--RGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
S PPRPG P A GPG RGGR Y + P P G +
Sbjct: 265 SMPPRPGYPGTPMGASGPGYPLRGGRAPSPG-----------YPQQSPYPATGGKPPYPI 313
Query: 88 MDLAPGGPGLPRPRPPWARPLSDG-AP--GWPPAPGPGSPG 125
P PG P+P P P G AP G+PP PGP PG
Sbjct: 314 QPQLPSFPGQPQPSVPLQPPYPPGPAPPYGFPPPPGPAWPG 354
Score = 29.3 bits (64), Expect = 8.6
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 23/85 (27%)
Query: 61 RARYEEVQRYSRGGPGPGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAP------- 113
R R E++Q R + R +LA P PRP PP RP+ G P
Sbjct: 147 RVRVEKLQEVVR----------KPRASQELAGDAPP-PRPPPP-VRPVPQGTPPVVEEQP 194
Query: 114 ----GWPPAPGPGSPGPGPRLGCAA 134
PP P P SP P +G A
Sbjct: 195 QPPLAMPPYPLPYSPSPSLPVGPTA 219
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 49.3 bits (116), Expect = 8e-06
Identities = 42/109 (38%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 32 PPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLA 91
P PG S EP PG+RG G + R+ R E ++ ++G PGP G P R M A
Sbjct: 1294 PGPPGASGEPGAPGPPGKRGPSGHMGREGR----EGEKGAKGEPGPD-GPPGRTGPMG-A 1347
Query: 92 PGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLGCAALRNVSG 140
G PG P P G PG APG P PGP LG + L + G
Sbjct: 1348 RGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGP-PGP-LGPSGLPGLKG 1394
Score = 37.7 bits (86), Expect = 0.024
Identities = 37/113 (32%), Positives = 41/113 (36%), Gaps = 32/113 (28%)
Query: 34 RPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGP--------GAGRPERR 85
+PG E P PG RG RG Q + G PGP G P +
Sbjct: 825 QPGLEGERGP---PGSRGERG-------------QPGATGQPGPKGDVGQDGAPGIPGEK 868
Query: 86 RLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG-------PGSPGPGPRLG 131
L L G PG P P+ P DG PG P G G PGP LG
Sbjct: 869 GLPGLQ-GPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLG 920
Score = 36.6 bits (83), Expect = 0.054
Identities = 38/110 (34%), Positives = 45/110 (40%), Gaps = 28/110 (25%)
Query: 27 APGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGA--GRPER 84
APG++ G EP P PG++G G S+G PGP G P
Sbjct: 624 APGAKG-NVGPPGEPGP---PGQQGNHG----------------SQGLPGPQGLIGTPGE 663
Query: 85 RRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGP----GSPG-PGPR 129
+ PG PGLP P P +G G A GP G PG PGPR
Sbjct: 664 KGPPG-NPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPR 712
Score = 35.4 bits (80), Expect = 0.12
Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 32/131 (24%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYS--------RGGPGPGA 79
P +P G + P P G +G RG + + V+ + +G PGP
Sbjct: 1098 PPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPG 1157
Query: 80 GRPERRRLMDLAPGGP-GLPRPRPPWARPLSDGAPGWPPAPG------------------ 120
E+ + D+ GP G P PR P S+G PG P G
Sbjct: 1158 ---EKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPG 1214
Query: 121 -PGSPG-PGPR 129
PG+PG PGP+
Sbjct: 1215 PPGAPGIPGPK 1225
Score = 35.0 bits (79), Expect = 0.16
Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 36 GQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLA--PG 93
GQ+ P PA G +G GE+ RG PGP G P + L L G
Sbjct: 908 GQTGPPGPAGVLGPQGKTGEVG----------PLGERGPPGP-PGPPGEQGLPGLEGREG 956
Query: 94 GPGLPRPRPPWARPLSDGAPGWP-PAPGPGSPGP 126
G P P + G G+P P GPG PGP
Sbjct: 957 AKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGP 990
Score = 34.3 bits (77), Expect = 0.27
Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 28/96 (29%)
Query: 45 PGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAPGGPGLPRPRPPW 104
PG G +G +GE A E+ Q++ G PG APG G+ P P
Sbjct: 370 PGAGEKGAKGE-----PAVIEKGQQFE-GPPG--------------APGPQGVVGPSGP- 408
Query: 105 ARPLSDGAPGWPPAPGPGSPGPGPRLGCAALRNVSG 140
G PG+P PGP PGP G + + G
Sbjct: 409 -----PGPPGFPGDPGP--PGPAGLPGIPGIDGIRG 437
Score = 34.3 bits (77), Expect = 0.27
Identities = 43/149 (28%), Positives = 53/149 (35%), Gaps = 38/149 (25%)
Query: 32 PPRP-GQSPEPSPAPGPGRRGGRGELA-------RQIRARYEEVQRYSR-GGPG------ 76
PP P G + P P PG G +GE R ++ + R + G PG
Sbjct: 480 PPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARG 539
Query: 77 -PGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPG--------WPPA-------PG 120
PG P+ R D PG PG R + G PG PP PG
Sbjct: 540 LPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPG 599
Query: 121 P-------GSPGPGPRLGCAALRNVSGAQ 142
P GSPGP R G + GA+
Sbjct: 600 PRGLLGPRGSPGPTGRPGVTGIDGAPGAK 628
Score = 33.9 bits (76), Expect = 0.35
Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 20/98 (20%)
Query: 29 GSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLM 88
G+ PR Q P S PG GG G Q A E+ +R G PGP
Sbjct: 1172 GAPGPRGPQGPTGSEGT-PGLPGGVG----QPGAVGEKGERGDAGDPGP----------- 1215
Query: 89 DLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG-PGSPG 125
PG PG+P P+ G G PG G PG
Sbjct: 1216 ---PGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPG 1250
Score = 31.2 bits (69), Expect = 2.3
Identities = 33/108 (30%), Positives = 36/108 (33%), Gaps = 32/108 (29%)
Query: 35 PGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAPGG 94
PGQS P G++G RGE RG PGP L L P
Sbjct: 1024 PGQSGSEGPVGPAGKKGSRGE----------------RGPPGPTGKDGIPGPLGPLGP-- 1065
Query: 95 PGLPRPRPPWARPLSDGAPGWPPAPG-------PGSPG-------PGP 128
PG P GAPG + G PG PG PGP
Sbjct: 1066 PGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGP 1113
Score = 29.3 bits (64), Expect = 8.6
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 29 GSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARY--EEVQRYSRGGPGPGAGRPERRR 86
G E P+ GQ+ + PG G +G+L Y + S G PGP E+ +
Sbjct: 761 GPEGPK-GQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGK 819
Query: 87 LMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGP-------GSPGPGPRLGCAALRNVS 139
G PGL R P G PG PGP G+PG G L+
Sbjct: 820 --SGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPP 877
Query: 140 G 140
G
Sbjct: 878 G 878
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 48.5 bits (114), Expect = 1e-05
Identities = 47/149 (31%), Positives = 55/149 (36%), Gaps = 22/149 (14%)
Query: 3 RRRAAVAAGFCASFLLGSVLNVLFAPGSEPPRPGQSP----EPSPA----PGPGRRGGRG 54
R + V+ A + G L P PPRPG+ P P PA PG R
Sbjct: 16 RPHSQVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEPGNRHPPPPAARTHPGSCRARCPS 75
Query: 55 ELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDL---------APGGPGL---PRPRP 102
A +R + R G A RPER+R+ APG L P P P
Sbjct: 76 PAAGGLRGPWTAAPGRQRADEGAAAARPERQRVWARRLPGSAAAPAPGRDALRLPPPPPP 135
Query: 103 PWARPLSD--GAPGWPPAPGPGSPGPGPR 129
P RP G G P P SP P PR
Sbjct: 136 PPERPRLPPAGLAGGPADSAPPSPAPAPR 164
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 48.5 bits (114), Expect = 1e-05
Identities = 33/105 (31%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 33 PRPGQSPEPSPAPGPGRRGGRGEL------ARQIRARYEEVQRYSRGGPGPGAGRPERRR 86
P PG P P P PGPG+ G G A + + + S GP A P +
Sbjct: 172 PGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPK- 230
Query: 87 LMDLAPGGPGLPRPRPPW---ARPLSDGAPGWPPAPGPGSPGPGP 128
P PG PP+ A P + AP P AP P +P P
Sbjct: 231 -----PAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAP 270
Score = 44.3 bits (103), Expect = 3e-04
Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 26/181 (14%)
Query: 5 RAAVAAGFCASFLLGSVLNVLFAPGSEPPR--PGQSPEPSPAPGPGRRGGRGELARQIRA 62
RAA A + GS A + P PG +PEP PA G R GG G Q
Sbjct: 51 RAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPA-GRARPGGGGP---QRPG 106
Query: 63 RYEEVQRYSRGGPGPGAGR---PERRRLMDLAP--------GGPGLPRPRPPWARPLSDG 111
+ GP P A + P AP GP P P P A+P
Sbjct: 107 PPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPE-PAPAGP-AKPAGPA 164
Query: 112 A------PGWPPAPGPG-SPGPGPRLGCAALRNVSGAQYMGSGYTKAVYRVRLPGGAAVA 164
A PG P PGPG PGPG G A + ++G+ + + + A V L A
Sbjct: 165 ALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAA 224
Query: 165 L 165
L
Sbjct: 225 L 225
Score = 32.0 bits (71), Expect = 1.3
Identities = 34/99 (34%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 71 SRGGPGPGAGRPERRRLMDLAPGGPGLPRPRPPW-ARPLSDGAPGWPPAPGPGSPGPGPR 129
+ G PG P R PGG G RP PP RPL P PPA P G
Sbjct: 79 AEGAPGAAPEPPPAGRAR---PGGGGPQRPGPPSPRRPLVPAGPA-PPAAKLRPPPEGSA 134
Query: 130 LGCAALRNVSGAQYMGSGYTKAVYRVRLPGG-AAVALKA 167
CA V A + +G A P G AA+A +A
Sbjct: 135 GSCAP---VPAAAAVAAGPEPAPAGPAKPAGPAALAARA 170
Score = 32.0 bits (71), Expect = 1.3
Identities = 32/123 (26%), Positives = 38/123 (30%), Gaps = 28/123 (22%)
Query: 26 FAPGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERR 85
F + PP P +P P AP P P P P
Sbjct: 243 FVGAAAPPAPA-APSPPAAPAPAAPAA---------------------APPPPPPAPATL 280
Query: 86 RLMDLAPGGPGLPRPR-PPWARPLSDGAPGWPPAPGPGSPGPG-----PRLGCAALRNVS 139
P GP P PP A + G+ G PAP P + GP P G AA
Sbjct: 281 ARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAP 340
Query: 140 GAQ 142
G +
Sbjct: 341 GVK 343
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 47.8 bits (112), Expect = 2e-05
Identities = 38/107 (35%), Positives = 43/107 (40%), Gaps = 14/107 (13%)
Query: 27 APGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRR 86
A + P R +SP P AP RGGR R R +R SR A P RR
Sbjct: 352 AAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRS----SASAPRRR- 406
Query: 87 LMDLAPGGPGLPRPRPP--WARPLSDGAPGWPPAPGPGSPGPGPRLG 131
G PRP PP +R LS G G+PGPGP G
Sbjct: 407 -------GRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPG 446
Score = 32.0 bits (71), Expect = 1.3
Identities = 31/101 (30%), Positives = 35/101 (34%), Gaps = 27/101 (26%)
Query: 29 GSEPPRPGQSPEPSPAPG---PGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERR 85
GS+ +SP PS G P R GG G QR G PG+
Sbjct: 290 GSQRSSGSRSPSPSGGSGWGSPQRNGGSG-------------QRSGAHGGRPGSAHSP-- 334
Query: 86 RLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGP 126
P P P PR R + A PPA G SP P
Sbjct: 335 ------PDKPSSPSPR---VRDKAAAAAPTPPARGKESPSP 366
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 47.8 bits (112), Expect = 2e-05
Identities = 35/99 (35%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 32 PPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAG-RPERRRLMDL 90
PP P S +P A GPG G G + S PG G G P +
Sbjct: 100 PPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTS 159
Query: 91 APGGPGLPRPRPPWAR-PLSDGAPGWPPAPGPGSPGPGP 128
AP PG P P PP + P + G PP P PGPGP
Sbjct: 160 AP--PGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGP 196
Score = 42.4 bits (98), Expect = 0.001
Identities = 35/108 (32%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
P + +P + P PAPG G A S GPGP P
Sbjct: 102 PPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGS--GPGPTPTPPPA--- 156
Query: 88 MDLAPGGPGLPRPRPPWA----RPLSDGAPGWPPAPGPGSPGPGPRLG 131
+ PG P P PP + P G P PPA PG PGPGP+ G
Sbjct: 157 --VTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPG-PGPGPKQG 201
Score = 32.7 bits (73), Expect = 0.77
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 75 PGPGAGRPERRRLMDLAPG--GPGLPRPRPPWARPLSDGAPGWPP--APGPGSPGPGPR 129
P PG G + R M PG GP P P PP + P PP P P P P P+
Sbjct: 34 PPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQ 92
Score = 32.0 bits (71), Expect = 1.3
Identities = 30/113 (26%), Positives = 35/113 (30%), Gaps = 43/113 (38%)
Query: 28 PGSEPPRP-------------GQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGG 74
PG+ PP P G P P+ PGPG + G
Sbjct: 162 PGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPG--------------------PKQG 201
Query: 75 PGPGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPG 127
PGPG + + GGPGL P G PP G G P G
Sbjct: 202 PGPGGPKGGKMPGGPKPGGGPGLSTP----------GGHPKPPHRGGGEPRGG 244
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 47.4 bits (111), Expect = 3e-05
Identities = 38/110 (34%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 24 VLFAPGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPE 83
VL P + PP G P P P PG+ G+ L V Y GP PG P+
Sbjct: 258 VLPPPLAGPPNRGDRPPP-PVLFPGQPFGQPPLGPLPPGPPPPVPGY---GPPPGPPPPQ 313
Query: 84 RRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLGCA 133
+ P GP PRP P PL+ P P P PG+P P P + A
Sbjct: 314 QG---PPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA 360
Score = 33.5 bits (75), Expect = 0.45
Identities = 28/97 (28%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 42 SPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPE---------RRRLMDLAP 92
+P P + + Q R + Q G GP G R R P
Sbjct: 153 NPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVP 212
Query: 93 GGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG-PGP 128
GG P P P P A PP P G PG PGP
Sbjct: 213 GGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGP 249
Score = 31.2 bits (69), Expect = 2.3
Identities = 31/102 (30%), Positives = 32/102 (31%), Gaps = 24/102 (23%)
Query: 35 PGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAPGG 94
PG P PGP GG P P P R L P G
Sbjct: 208 PGAVPGGDRFPGPAGPGGPPP-------------------PFPAGQTPPRPPLGPPGPPG 248
Query: 95 PGLPRP-----RPPWARPLSDGAPGWPPAPGPGSPGPGPRLG 131
P P P PP A P + G PP PG P P LG
Sbjct: 249 PPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLG 290
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 47.4 bits (111), Expect = 3e-05
Identities = 46/133 (34%), Positives = 53/133 (39%), Gaps = 23/133 (17%)
Query: 27 APGSEPPRPGQSP--------EPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPG 78
AP PP P SP P P PG + LA Q RA E SRGG G G
Sbjct: 23 APFGCPPPPLPSPAFPPPLPQRPGPFPGASAPFLQPPLALQPRASAEA----SRGGGGAG 78
Query: 79 AGRPERRRLMDLAP-------GGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLG 131
A P + P G RPRPP P +P WP AP P P LG
Sbjct: 79 AFYPVPPPPLPPPPPQCRPFPGTDAGERPRPPPPGPGPPWSPRWPEAP----PPPADVLG 134
Query: 132 CAALRNVSGAQYM 144
AAL+ + Q++
Sbjct: 135 DAALQRLRDRQWL 147
Score = 31.2 bits (69), Expect = 2.3
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 93 GGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPR 129
G PG P P+PP P G P PP P P P P P+
Sbjct: 10 GRPGPPPPQPPPPAPF--GCPP-PPLPSPAFPPPLPQ 43
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 47.0 bits (110), Expect = 4e-05
Identities = 38/116 (32%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
P P PG P PG RG GEL R + R +G G G PE +
Sbjct: 561 PPGPPGPPGSIGHPGARGPPGYRGPTGELGDP-GPRGNQGDRGDKGAAGAGLDGPEGDQ- 618
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG-PGSPGPGPRLGCAALRNVSGAQ 142
GP P+ P ++ DGAPG P PG PG PG G + + S Q
Sbjct: 619 ------GPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGAQGTPGICDTSACQ 668
Score = 38.1 bits (87), Expect = 0.018
Identities = 44/139 (31%), Positives = 50/139 (35%), Gaps = 10/139 (7%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQ-----IRARYEEVQRYSRGGPGPGAGRP 82
P EP PG + P G RG G L Q R + Q+ S G PG +
Sbjct: 362 PSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQG 421
Query: 83 ERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGP-GSPGPGPRLGCAALRNVSGA 141
R + D PGG P+ A SDG PG GP G GP G G
Sbjct: 422 LRGDVGDRGPGGAAGPKGDQGIAG--SDGLPGDKGELGPSGLVGPKGESGSRGELGPKGT 479
Query: 142 QYMGSGYTKAVYRVRLPGG 160
Q G T V V P G
Sbjct: 480 Q--GPNGTSGVQGVPGPPG 496
Score = 37.4 bits (85), Expect = 0.031
Identities = 36/107 (33%), Positives = 39/107 (36%), Gaps = 18/107 (16%)
Query: 35 PGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAP-- 92
PG P P PG+ G GE + + G PGP ER L P
Sbjct: 55 PGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRD-GPPGPKGAPGERGSLGPPGPPG 113
Query: 93 -GGPGLPRPR-------PPWA-----RPLSDGAPGWPPAPGPGSPGP 126
GG GLP P PP P G PG P PGP PGP
Sbjct: 114 LGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGP--PGP 158
Score = 36.2 bits (82), Expect = 0.070
Identities = 39/128 (30%), Positives = 45/128 (35%), Gaps = 29/128 (22%)
Query: 28 PGSEPPR--PGQSPEPSPAPGPGRRGGRGELARQ--IRARYEEVQRYSRGGPGP------ 77
PG P+ PG+ +P A PG G G R + +R S G PGP
Sbjct: 58 PGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGK 117
Query: 78 GAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG----------------- 120
G P + PGG GL P P P G PG P PG
Sbjct: 118 GLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSI 177
Query: 121 --PGSPGP 126
PG PGP
Sbjct: 178 CPPGPPGP 185
Score = 34.3 bits (77), Expect = 0.27
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 73 GGPGPGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG-PGSPG------ 125
G PGP G+P + + D G PGLP P P P G PG PG PG G
Sbjct: 35 GPPGP-PGKPGQDGI-DGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDG 92
Query: 126 -PGPR 129
PGP+
Sbjct: 93 PPGPK 97
Score = 32.3 bits (72), Expect = 1.0
Identities = 43/132 (32%), Positives = 47/132 (35%), Gaps = 24/132 (18%)
Query: 13 CASFLLGSVLNVLFAPGSEPP--RPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRY 70
CA LL +L L A PG P P PG+ G GE
Sbjct: 7 CAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLP-------- 58
Query: 71 SRGGPGP-GA----GRPERRRLMDLAPGGPGL------PRPRPPWARPLSDGAPGWPPAP 119
G PGP GA G+P L L PG GL P P+ S G PG P
Sbjct: 59 --GPPGPKGAPGKPGKPGEAGLPGL-PGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLG 115
Query: 120 GPGSPGPGPRLG 131
G G PGP G
Sbjct: 116 GKGLPGPPGEAG 127
Score = 32.0 bits (71), Expect = 1.3
Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 90 LAPGGPGLPRPRPPWARPLSDGAPGWPPAPG-PGSPGPGPRLGCAALRNVSG 140
LAPG G P P P P G+ G P A G PG GP LG R G
Sbjct: 548 LAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQG 599
Score = 30.4 bits (67), Expect = 3.8
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 92 PGGPGLPRPRPPWARPLSDGAPGWPPAPGP----GSPGPGPRLGCAALRNVSG 140
PG PG P P + DG G P PGP G+PG + G A L + G
Sbjct: 31 PGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPG 83
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 46.6 bits (109), Expect = 5e-05
Identities = 41/110 (37%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 34 RPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGAGRPERRRLMDLAP 92
+PG + P P G+ G GE Q VQ G PG PG G+P + D P
Sbjct: 273 KPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQ----GPPGIPGIGKPGQ----DGIP 324
Query: 93 GGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG-PGPRLGCAALRNVSGA 141
G PG P + P G PG P PG G PG PGP+ G + V GA
Sbjct: 325 GQPGFPGGKGEQGLP---GLPGPPGLPGIGKPGFPGPK-GDRGMGGVPGA 370
Score = 38.5 bits (88), Expect = 0.014
Identities = 35/101 (34%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 33 PRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAP 92
P P P P PG G+ GG G L Q + + R +G PGP R + P
Sbjct: 193 PGPQGPPGPHGLPGIGKPGGPG-LPGQPGPKGD---RGPKGLPGPQGLRGPKGDKGFGMP 248
Query: 93 GGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG----PGPR 129
G PG+ P P G PG PG G PG PGP+
Sbjct: 249 GAPGVKGP------PGMHGPPGPVGLPGVGKPGVTGFPGPQ 283
Score = 35.8 bits (81), Expect = 0.091
Identities = 35/109 (32%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 25 LFAPGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGAGRPE 83
L P EP PG P PG G G + + + G PG PG G+P
Sbjct: 478 LLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPP-GIPGPKGEPGLPGPPGFPGIGKPG 536
Query: 84 RRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGS---PGPGPR 129
L G PG P P +P G PG P PGP + P P P+
Sbjct: 537 VAGLH----GPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQ 581
Score = 35.0 bits (79), Expect = 0.16
Identities = 39/131 (29%), Positives = 45/131 (34%), Gaps = 32/131 (24%)
Query: 28 PGSEPPRPGQSPEPSPAPG----PGRRGGRGELARQIRARYEEVQRYSRGGPGPGA---- 79
P EP PG P P PG PG +G G + Q G PGP
Sbjct: 388 PPGEPGLPG-IPGPMGPPGAIGFPGPKGEGGIVGPQ-------------GPPGPKGEPGL 433
Query: 80 -GRPERRRLMDLA--PGGPGLPRPRPPWARPLSDGAPGWPPAPG-------PGSPGPGPR 129
G P + + PG GLP P P G PG P PG PG PG
Sbjct: 434 QGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGL 493
Query: 130 LGCAALRNVSG 140
G + + G
Sbjct: 494 QGPPGIPGIGG 504
Score = 34.7 bits (78), Expect = 0.20
Identities = 38/103 (36%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 33 PRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGG-PG-PGA-GRPERR-RLM 88
P P P P PG G G +G+ Q Y V + G PG PGA G P + +
Sbjct: 126 PGPRGPPGPPGLPGHGIPGIKGKPGPQ---GYPGVGKPGMPGMPGKPGAMGMPGAKGEIG 182
Query: 89 DLAPGGP-GLPRPRPPWARPLSDGAPGWPPAPGPGSPG-PGPR 129
GP G+P P+ P P G PG GPG PG PGP+
Sbjct: 183 QKGEIGPMGIPGPQGP---PGPHGLPGIGKPGGPGLPGQPGPK 222
Score = 34.7 bits (78), Expect = 0.20
Identities = 35/105 (33%), Positives = 41/105 (39%), Gaps = 20/105 (19%)
Query: 34 RPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGAGRP-----ERRRL 87
+PGQ P PG GG+GE G PG PG G+P + R
Sbjct: 317 KPGQDGIPGQ---PGFPGGKGEQGLPGLP----------GPPGLPGIGKPGFPGPKGDRG 363
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG-PGSPGPGPRLG 131
M PG G + P P G PG P PG PG GP +G
Sbjct: 364 MGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIG 408
Score = 34.7 bits (78), Expect = 0.20
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 35 PGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPER-RRLMDLAPG 93
PG EP PG+ G GE+ RG PGP + E ++ + PG
Sbjct: 425 PGPKGEPGLQGFPGKPGFLGEVGPP----------GMRGLPGPIGPKGEAGQKGVPGLPG 474
Query: 94 GPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG--------PGPR 129
PGL P+ P G G P PG G P PGP+
Sbjct: 475 VPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPK 518
Score = 33.9 bits (76), Expect = 0.35
Identities = 42/150 (28%), Positives = 52/150 (34%), Gaps = 36/150 (24%)
Query: 32 PPRPGQSPEPSPAPGPGRRGGRGELARQ----IRARYEEVQRYSRGGPG----PGAGRPE 83
P +PG + P PG +G RG + A + G PG PG G+P
Sbjct: 216 PGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPG 275
Query: 84 RRRLMDL-----APGGPGLPRPR--------------PPWARPLSDGAPGWPPAPG---- 120
PG PG P P+ P +P DG PG P PG
Sbjct: 276 VTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGE 335
Query: 121 ---PGSPGPG--PRLGCAALRNVSGAQYMG 145
PG PGP P +G G + MG
Sbjct: 336 QGLPGLPGPPGLPGIGKPGFPGPKGDRGMG 365
Score = 31.2 bits (69), Expect = 2.3
Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 32 PPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLA 91
P P E PAP G+ + ++I ++ RG PGP
Sbjct: 84 PHLPQYMKEIQPAPRMGKEAVPKK-GKEIPLASLRGEQGPRGEPGPRG-----------P 131
Query: 92 PGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLGCAALRNVSG 140
PG PGLP P + G G+P PG PG + G + G
Sbjct: 132 PGPPGLPGHGIPGIKG-KPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKG 179
Score = 30.0 bits (66), Expect = 5.0
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 28 PGSEPPR--PGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGAGRPER 84
PG P+ GQ P PG G +GE + +G PG PG G P
Sbjct: 455 PGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIP-------GDQGLQGPPGIPGIGGPSG 507
Query: 85 RRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG 125
G PG+P P+ G PG P PG G PG
Sbjct: 508 ------PIGPPGIPGPKG------EPGLPGPPGFPGIGKPG 536
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 46.6 bits (109), Expect = 5e-05
Identities = 41/110 (37%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 34 RPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGAGRPERRRLMDLAP 92
+PG + P P G+ G GE Q VQ G PG PG G+P + D P
Sbjct: 273 KPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQ----GPPGIPGIGKPGQ----DGIP 324
Query: 93 GGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG-PGPRLGCAALRNVSGA 141
G PG P + P G PG P PG G PG PGP+ G + V GA
Sbjct: 325 GQPGFPGGKGEQGLP---GLPGPPGLPGIGKPGFPGPK-GDRGMGGVPGA 370
Score = 38.5 bits (88), Expect = 0.014
Identities = 35/101 (34%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 33 PRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAP 92
P P P P PG G+ GG G L Q + + R +G PGP R + P
Sbjct: 193 PGPQGPPGPHGLPGIGKPGGPG-LPGQPGPKGD---RGPKGLPGPQGLRGPKGDKGFGMP 248
Query: 93 GGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG----PGPR 129
G PG+ P P G PG PG G PG PGP+
Sbjct: 249 GAPGVKGP------PGMHGPPGPVGLPGVGKPGVTGFPGPQ 283
Score = 35.8 bits (81), Expect = 0.091
Identities = 35/109 (32%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 25 LFAPGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGAGRPE 83
L P EP PG P PG G G + + + G PG PG G+P
Sbjct: 478 LLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPP-GIPGPKGEPGLPGPPGFPGIGKPG 536
Query: 84 RRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGS---PGPGPR 129
L G PG P P +P G PG P PGP + P P P+
Sbjct: 537 VAGLH----GPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQ 581
Score = 35.0 bits (79), Expect = 0.16
Identities = 39/131 (29%), Positives = 45/131 (34%), Gaps = 32/131 (24%)
Query: 28 PGSEPPRPGQSPEPSPAPG----PGRRGGRGELARQIRARYEEVQRYSRGGPGPGA---- 79
P EP PG P P PG PG +G G + Q G PGP
Sbjct: 388 PPGEPGLPG-IPGPMGPPGAIGFPGPKGEGGIVGPQ-------------GPPGPKGEPGL 433
Query: 80 -GRPERRRLMDLA--PGGPGLPRPRPPWARPLSDGAPGWPPAPG-------PGSPGPGPR 129
G P + + PG GLP P P G PG P PG PG PG
Sbjct: 434 QGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGL 493
Query: 130 LGCAALRNVSG 140
G + + G
Sbjct: 494 QGPPGIPGIGG 504
Score = 34.7 bits (78), Expect = 0.20
Identities = 38/103 (36%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 33 PRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGG-PG-PGA-GRPERR-RLM 88
P P P P PG G G +G+ Q Y V + G PG PGA G P + +
Sbjct: 126 PGPRGPPGPPGLPGHGIPGIKGKPGPQ---GYPGVGKPGMPGMPGKPGAMGMPGAKGEIG 182
Query: 89 DLAPGGP-GLPRPRPPWARPLSDGAPGWPPAPGPGSPG-PGPR 129
GP G+P P+ P P G PG GPG PG PGP+
Sbjct: 183 QKGEIGPMGIPGPQGP---PGPHGLPGIGKPGGPGLPGQPGPK 222
Score = 34.7 bits (78), Expect = 0.20
Identities = 35/105 (33%), Positives = 41/105 (39%), Gaps = 20/105 (19%)
Query: 34 RPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGAGRP-----ERRRL 87
+PGQ P PG GG+GE G PG PG G+P + R
Sbjct: 317 KPGQDGIPGQ---PGFPGGKGEQGLPGLP----------GPPGLPGIGKPGFPGPKGDRG 363
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG-PGSPGPGPRLG 131
M PG G + P P G PG P PG PG GP +G
Sbjct: 364 MGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIG 408
Score = 34.7 bits (78), Expect = 0.20
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 35 PGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPER-RRLMDLAPG 93
PG EP PG+ G GE+ RG PGP + E ++ + PG
Sbjct: 425 PGPKGEPGLQGFPGKPGFLGEVGPP----------GMRGLPGPIGPKGEAGQKGVPGLPG 474
Query: 94 GPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG--------PGPR 129
PGL P+ P G G P PG G P PGP+
Sbjct: 475 VPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPK 518
Score = 33.9 bits (76), Expect = 0.35
Identities = 42/150 (28%), Positives = 52/150 (34%), Gaps = 36/150 (24%)
Query: 32 PPRPGQSPEPSPAPGPGRRGGRGELARQ----IRARYEEVQRYSRGGPG----PGAGRPE 83
P +PG + P PG +G RG + A + G PG PG G+P
Sbjct: 216 PGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPG 275
Query: 84 RRRLMDL-----APGGPGLPRPR--------------PPWARPLSDGAPGWPPAPG---- 120
PG PG P P+ P +P DG PG P PG
Sbjct: 276 VTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGE 335
Query: 121 ---PGSPGPG--PRLGCAALRNVSGAQYMG 145
PG PGP P +G G + MG
Sbjct: 336 QGLPGLPGPPGLPGIGKPGFPGPKGDRGMG 365
Score = 31.2 bits (69), Expect = 2.3
Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 32 PPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLA 91
P P E PAP G+ + ++I ++ RG PGP
Sbjct: 84 PHLPQYMKEIQPAPRMGKEAVPKK-GKEIPLASLRGEQGPRGEPGPRG-----------P 131
Query: 92 PGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLGCAALRNVSG 140
PG PGLP P + G G+P PG PG + G + G
Sbjct: 132 PGPPGLPGHGIPGIKG-KPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKG 179
Score = 30.0 bits (66), Expect = 5.0
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 28 PGSEPPR--PGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGAGRPER 84
PG P+ GQ P PG G +GE + +G PG PG G P
Sbjct: 455 PGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIP-------GDQGLQGPPGIPGIGGPSG 507
Query: 85 RRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG 125
G PG+P P+ G PG P PG G PG
Sbjct: 508 ------PIGPPGIPGPKG------EPGLPGPPGFPGIGKPG 536
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 46.2 bits (108), Expect = 7e-05
Identities = 39/111 (35%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 28 PGSE--PPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGP-GAGRPER 84
PG + P +PG P P PG G G A Q+ Y+E PGP G P
Sbjct: 129 PGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRG 188
Query: 85 RRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGP----GSPGPGPRLG 131
PG PG P P+ P G PG P A GP G PGP + G
Sbjct: 189 ------LPGPPGAPGPQGFQGPP---GEPGEPGASGPMGPRGPPGPPGKNG 230
Score = 45.4 bits (106), Expect = 1e-04
Identities = 39/106 (36%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 27 APGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGP----GAGRP 82
A G+ P PG + P PG G +GE Q R E + RG PGP GA P
Sbjct: 327 ATGAAGP-PGPTGPAGPPGFPGAVGAKGEAGPQ-GPRGSEGPQGVRGEPGPPGPAGAAGP 384
Query: 83 ERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSP-GPG 127
PG G P + P GAPG+P A GP P GPG
Sbjct: 385 AGN------PGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPG 424
Score = 43.1 bits (100), Expect = 6e-04
Identities = 42/132 (31%), Positives = 47/132 (35%), Gaps = 28/132 (21%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGE-----LARQIRARYEEVQRYSRGGPGPGA--- 79
PG P G S EP G G +GE + EE +R +RG PGP
Sbjct: 423 PGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPG 482
Query: 80 -----GRPERRRLMD----LAPGGP----GLPRPRPPWARPLSDGAPGWPPAPG------ 120
G P R P GP G P P P P G PG PG
Sbjct: 483 PPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 542
Query: 121 -PGSPGPGPRLG 131
PGSPGP + G
Sbjct: 543 SPGSPGPDGKTG 554
Score = 42.7 bits (99), Expect = 7e-04
Identities = 37/118 (31%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
P E +PG+ P PG G RGE R +R +G PGP R
Sbjct: 651 PPGEAGKPGEQGVPGDLGAPGPSGARGE-------RGFPGERGVQGPPGPAGPRGANG-- 701
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG----PGSPGPGPRLGCAALRNVSGA 141
APG G P S GAPG PG G PGP G A + G+
Sbjct: 702 ---APGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGS 756
Score = 42.0 bits (97), Expect = 0.001
Identities = 39/120 (32%), Positives = 43/120 (35%), Gaps = 35/120 (29%)
Query: 32 PPRPGQSPEPSPAPGP-GRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDL 90
PP P + P PGP G+ GG+G RG GP AGRP
Sbjct: 885 PPGPSGNAGPPGPPGPAGKEGGKGP----------------RGETGP-AGRPGE------ 921
Query: 91 APGGPGLPRPRPPWARPLSDGAPGWPPAPGP----------GSPGPGPRLGCAALRNVSG 140
G PG P P P +DG G P PGP G PG G L SG
Sbjct: 922 -VGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSG 980
Score = 41.6 bits (96), Expect = 0.002
Identities = 39/109 (35%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 30 SEPPRPGQSPEPSPAPG-PGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLM 88
S P PG P P G PG G +G+ A+ E +G PGP E +R
Sbjct: 418 SGPQGPGGPPGPKGNSGEPGAPGSKGDTG----AKGEPGPVGVQGPPGPAG--EEGKRGA 471
Query: 89 DLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGP-------GSPGP-GPR 129
PG GLP P P S G PG GP GSPGP GP+
Sbjct: 472 RGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPK 520
Score = 40.0 bits (92), Expect = 0.005
Identities = 36/100 (36%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 32 PPRP-GQSPEPSPAPGPGRRGGRGELA--RQIRARYEEVQRYSRGGPGP-GAGRPERRRL 87
PP P GQ P P PG RG G + A E + RG PGP GA P +
Sbjct: 555 PPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDG 614
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPG 127
A G PG P G+PG+ PGP P PG
Sbjct: 615 EAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGP-PG 653
Score = 38.5 bits (88), Expect = 0.014
Identities = 41/129 (31%), Positives = 44/129 (34%), Gaps = 17/129 (13%)
Query: 28 PGSEPPRPGQSPEPSPA--PGP-GRRGGRGE--LARQIRARYEEVQRYSRGGPGPG---- 78
P E + G EP P PGP G RGG G + RG PGP
Sbjct: 462 PAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKG 521
Query: 79 ----AGRPERRRLMDLA--PGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLGC 132
AGRP L G PG P P P G G P PGP PG + G
Sbjct: 522 SPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGP--PGARGQAGV 579
Query: 133 AALRNVSGA 141
GA
Sbjct: 580 MGFPGPKGA 588
Score = 38.5 bits (88), Expect = 0.014
Identities = 38/120 (31%), Positives = 42/120 (35%), Gaps = 34/120 (28%)
Query: 31 EPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDL 90
EP + G+ P P G G GE Q G PGP ER
Sbjct: 591 EPGKAGERGVPGPPGAVGPAGKDGEAGAQ-------------GPPGPAGPAGERGEQGPA 637
Query: 91 -APGGPGLPRPRPP---WARPLSDGAPGWPPAPGP----------------GSPGP-GPR 129
+PG GLP P P +P G PG APGP G PGP GPR
Sbjct: 638 GSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPR 697
Score = 38.1 bits (87), Expect = 0.018
Identities = 39/121 (32%), Positives = 47/121 (38%), Gaps = 18/121 (14%)
Query: 28 PGSEPPRPGQS----PEPSPAPGPGRRGGRGELARQIR--ARYEEVQRYSRGGPG----P 77
P EP PG S P P P PG+ G GE + R R + +RG PG P
Sbjct: 204 PPGEPGEPGASGPMGPRGPPGP-PGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLP 262
Query: 78 GAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG-------PGSPGPGPRL 130
G +D A G G P+ P +GAPG G PG+PGP
Sbjct: 263 GMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 322
Query: 131 G 131
G
Sbjct: 323 G 323
Score = 38.1 bits (87), Expect = 0.018
Identities = 40/130 (30%), Positives = 46/130 (35%), Gaps = 36/130 (27%)
Query: 28 PGSEPPR--PGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERR 85
PG + P G+ P P PG G GE R+ G PG G P R
Sbjct: 982 PGKQGPSGASGERGPPGPMGPPGLAGPPGESGRE-------------GAPG-AEGSPGR- 1026
Query: 86 RLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGP-------------GSPGPGPRLGC 132
D +PG G P P GAPG P APGP G GP +G
Sbjct: 1027 ---DGSPGAKGDRGETGPAGPP---GAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGP 1080
Query: 133 AALRNVSGAQ 142
R +G Q
Sbjct: 1081 VGARGPAGPQ 1090
Score = 36.2 bits (82), Expect = 0.070
Identities = 36/104 (34%), Positives = 39/104 (37%), Gaps = 29/104 (27%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
P EP PG++ P G RG GE R G PGP R
Sbjct: 285 PKGEPGSPGENGAPGQM---GPRGLPGERGRP-------------GAPGPAGARGN---- 324
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG-PGSPGP-GPR 129
D A G G P P P G PG+P A G G GP GPR
Sbjct: 325 -DGATGAAGPPGPTGP------AGPPGFPGAVGAKGEAGPQGPR 361
Score = 36.2 bits (82), Expect = 0.070
Identities = 35/92 (38%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 36 GQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDL-APGG 94
G P P PG +G G RG PG AG P + L L P G
Sbjct: 1115 GLQGPPGPPGSPGEQGPSGASG----------PAGPRGPPG-SAGAPGKDGLNGLPGPIG 1163
Query: 95 PGLPRPRPPWARPLSDGAPGWPPAPGPGSPGP 126
P PR R A P+ G PG PP P PG PGP
Sbjct: 1164 PPGPRGRTGDAGPV--GPPG-PPGP-PGPPGP 1191
Score = 35.4 bits (80), Expect = 0.12
Identities = 37/129 (28%), Positives = 44/129 (34%), Gaps = 16/129 (12%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELAR--------------QIRARYEEVQRYSRG 73
P + G P PA G RG +G + E+ G
Sbjct: 609 PAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLG 668
Query: 74 GPGPGAGRPERRRLMDL-APGGPGLPRPRPPWARPLSDGAPGWPPAPG-PGSPGPGPRLG 131
PGP R ER + G PG PR P +DGA G APG PGS G G
Sbjct: 669 APGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQG 728
Query: 132 CAALRNVSG 140
R +G
Sbjct: 729 MPGERGAAG 737
Score = 34.7 bits (78), Expect = 0.20
Identities = 22/40 (55%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 92 PGGPGLPR-PRPPWARPLSDGAPGWPPAPG-PGSPG-PGP 128
P G PR PR P P DG PG P PG PG PG PGP
Sbjct: 113 PKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGP 152
Score = 33.9 bits (76), Expect = 0.35
Identities = 43/153 (28%), Positives = 52/153 (33%), Gaps = 41/153 (26%)
Query: 27 APGSEPPRPGQSP--EPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPER 84
+PG + R P P PA PG +G G GP G P
Sbjct: 756 SPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGP--------------AGPTGARGAPGD 801
Query: 85 RRLMDLAPGGPGLPRPRPPWARPLSDGAPGW--------------PPAP-GP-GSPGPGP 128
R G PG P P P +DG PG PP P GP G PGP
Sbjct: 802 R-------GEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIG 854
Query: 129 RLGCAALRNVSGAQYM--GSGYTKAVYRVRLPG 159
+G + G+ +G+ A RV PG
Sbjct: 855 NVGAPGAKGARGSAGPPGATGFPGAAGRVGPPG 887
Score = 32.0 bits (71), Expect = 1.3
Identities = 39/118 (33%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 27 APGSE--PPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPER 84
APGS+ P G E A PG +G RG+ + A + RG GP G P
Sbjct: 717 APGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPK-GADGSPGKDGVRGLTGP-IGPPGP 774
Query: 85 RRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLGCAALRNVSGAQ 142
APG G P P + GAPG PGP PGP G GA+
Sbjct: 775 AG----APGDKGESGPSGPAGPTGARGAPGDRGEPGP--PGPAGFAGPPGADGQPGAK 826
Score = 31.2 bits (69), Expect = 2.3
Identities = 30/101 (29%), Positives = 34/101 (33%), Gaps = 13/101 (12%)
Query: 35 PGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGP--GAGRPERRRLMDLA- 91
PG +P PG G +G+ A G PGP G P + A
Sbjct: 817 PGADGQPGAKGEPGDAGAKGDAGPPGPAG-------PAGPPGPIGNVGAPGAKGARGSAG 869
Query: 92 -PGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSP--GPGPR 129
PG G P P G G P PGP G GPR
Sbjct: 870 PPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPR 910
Score = 30.4 bits (67), Expect = 3.8
Identities = 21/40 (52%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 94 GPGLPR-PRPPWARPLSDGAPGWPPAPG-PGSPGPGPRLG 131
GP PR P P R G PG P PG PG PGP P LG
Sbjct: 118 GPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGP-PGLG 156
>gi|83977450 discoidin domain receptor family, member 1 isoform a
[Homo sapiens]
Length = 913
Score = 46.2 bits (108), Expect = 7e-05
Identities = 62/246 (25%), Positives = 92/246 (37%), Gaps = 40/246 (16%)
Query: 19 GSVLNVLFAPGSEPPRPGQSPEPS---PAPGPGRRGGRGELA-----RQIRARYEEVQRY 70
G + + PG P P Q P P P P G L R + A Y R
Sbjct: 467 GDTILINNRPGPREPPPYQEPRPRGNPPHSAPCVPNGSALLLSNPAYRLLLATYARPPR- 525
Query: 71 SRGGPGPGAGRPERRRLMD---LAPGGPGLPRPRPP--------------WARPLSDGAP 113
G P P +P + + P PG P PP + ++ G
Sbjct: 526 GPGPPTPAWAKPTNTQAYSGDYMEPEKPGAPLLPPPPQNSVPHYAEADIVTLQGVTGGNT 585
Query: 114 GWPPAPGPGSPGPGPRLGCAALRNVSGAQYMGSGYTKAVYRVRLPGGAAVALKAVDF--- 170
PA PG+ G GP + + +G G V+ + + L ++DF
Sbjct: 586 YAVPALPPGAVGDGPPRVDFPRSRLRFKEKLGEGQFGEVHLCEVD--SPQDLVSLDFPLN 643
Query: 171 --SGHDLGSCVREFGVRRGCYRLAAHKLLKEMVLLERLRHPNVLQLYGYCYQDSEDIPDT 228
GH L V+ +R + A + LKE+ ++ RL+ PN+++L G C QD D
Sbjct: 644 VRKGHPLLVAVKI--LRPDATKNARNDFLKEVKIMSRLKDPNIIRLLGVCVQD-----DP 696
Query: 229 LTTITE 234
L IT+
Sbjct: 697 LCMITD 702
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 46.2 bits (108), Expect = 7e-05
Identities = 41/124 (33%), Positives = 48/124 (38%), Gaps = 23/124 (18%)
Query: 28 PGSE--PPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERR 85
PG++ P PG EP P PG G RG ++ Q G PG G
Sbjct: 175 PGAQGVPGPPGFQGEPGPQGEPGPPGDRG-----LKGDNGVGQPGLPGAPGQGG------ 223
Query: 86 RLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG----PGSPGPGPRLGCAALRNVSGA 141
APG PGLP P +P DG PG P G PG PGP G + G
Sbjct: 224 -----APGPPGLPGP-AGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGV 277
Query: 142 QYMG 145
+G
Sbjct: 278 DGVG 281
Score = 40.4 bits (93), Expect = 0.004
Identities = 36/98 (36%), Positives = 41/98 (41%), Gaps = 22/98 (22%)
Query: 45 PGPGRRGGRGELARQIRARYEEVQRYSRGGPGP----GAGRPERRRL----MDLA--PGG 94
P GG G A +Y +Q +G GP G G+ L MDL PG
Sbjct: 24 PRASSGGGAGGAAGYAPVKY--IQPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGP 81
Query: 95 PGLPRPRPPWARPLSDGAPGWPPAPGPGSPG----PGP 128
PG P PR P G PG+P PG G PG PGP
Sbjct: 82 PGKPGPRGP------PGPPGFPGKPGMGKPGLHGQPGP 113
Score = 38.1 bits (87), Expect = 0.018
Identities = 38/109 (34%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 32 PPRPGQSPEPSPAPGPGRRG-GRGELARQIRARYEEVQRYSRGGPGP----GAGRPERRR 86
P PGQ P P PG G G+ L A ++ + G PGP GA P+
Sbjct: 216 PGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPP 275
Query: 87 LMDLA--PGGPGLPRPRPP---WARPLSDGAPGWPPAPGPGSPG-PGPR 129
+D PG GLP P+ P P + G PG G G PG PGP+
Sbjct: 276 GVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPK 324
Score = 37.4 bits (85), Expect = 0.031
Identities = 36/104 (34%), Positives = 41/104 (39%), Gaps = 28/104 (26%)
Query: 32 PPRPGQSPEPSPAPGPGRRG-GRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDL 90
P +PG P P PG+ G G+ L G PGP AG P R+
Sbjct: 82 PGKPGPRGPPGPPGFPGKPGMGKPGL---------------HGQPGP-AGPPGFSRMGKA 125
Query: 91 APGGPGLPRPRPPWARPLSDGAPG--------WPPAPGPGSPGP 126
P PGLP P +P G PG PP P PG PGP
Sbjct: 126 GP--PGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGP-PGLPGP 166
Score = 36.2 bits (82), Expect = 0.070
Identities = 40/106 (37%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 32 PPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PG-AGRPERR---- 85
P PG + PA PG G RGE + Q G PG PG AG P RR
Sbjct: 318 PGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLG-GPPGLPGSAGLPGRRGPPG 376
Query: 86 RLMDLAPGG-PGLPRPRPPWARPLSDGAPGWPPAPG-PGSPG-PGP 128
+ PGG PG+P R G PG P G PG+ G PGP
Sbjct: 377 PKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGP 422
Score = 35.8 bits (81), Expect = 0.091
Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 25/114 (21%)
Query: 35 PGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG----PGAGRPERRRLMDL 90
PGQ P+ PG +G G + Q +G PG PG GR
Sbjct: 453 PGQPGLRGPSGIPGLQGPAGPIGPQGLPGL-------KGEPGLPGPPGEGRA-------- 497
Query: 91 APGGPGLPRPRPPWARPLSDGAPGWPPAPG----PGSPGPGPRLGCAALRNVSG 140
G PG P P P S G G P PG PG+PG G A L +G
Sbjct: 498 --GEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNG 549
Score = 32.0 bits (71), Expect = 1.3
Identities = 36/104 (34%), Positives = 38/104 (36%), Gaps = 20/104 (19%)
Query: 28 PGSE-PPRP-GQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGAGRPER 84
PG+ PP P G EP PG G G L Q+ G PG PG P
Sbjct: 414 PGAHGPPGPTGPKGEPGFTGRPGGPGVAGALG----------QKGDLGLPGQPGLRGPSG 463
Query: 85 RRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG-PG 127
PG G P P P G PG P PG G G PG
Sbjct: 464 ------IPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPG 501
Score = 31.2 bits (69), Expect = 2.3
Identities = 32/104 (30%), Positives = 35/104 (33%), Gaps = 27/104 (25%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
PG P PG E P PG G RG+ GP AG+P
Sbjct: 369 PGRRGP-PGPKGEAGPGGPPGVPGIRGDQ-----------------GPSGLAGKPG---- 406
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLG 131
PG GLP P G PG+ PG PG LG
Sbjct: 407 ---VPGERGLPGAHGPPGPTGPKGEPGF--TGRPGGPGVAGALG 445
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 46.2 bits (108), Expect = 7e-05
Identities = 37/109 (33%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 27 APGSEPPRPGQSPEPSPAPGPGR------RGGRGELARQIRARYEEVQRYSRGGPGPGAG 80
AP PP P +P+ +P P G + + YE +S G PG G
Sbjct: 781 APPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGG 840
Query: 81 RPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPR 129
E G+PRPR P P GAP PP PGP P PGPR
Sbjct: 841 AAEEE----------GVPRPRAP-PEPPDPGAPRPPPDPGP-LPLPGPR 877
Score = 38.5 bits (88), Expect = 0.014
Identities = 34/116 (29%), Positives = 38/116 (32%), Gaps = 46/116 (39%)
Query: 28 PGSEPPRPGQSPEP------------SPAPGPGRRGGRGELARQIRARYEEVQRYSRGGP 75
P P P SP+P SP P PG G YE +S G
Sbjct: 788 PPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSG------------YETETPFSPEGA 835
Query: 76 GPGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLG 131
PG G E G+PRPR P P P PG+P P P G
Sbjct: 836 FPGGGAAEEE----------GVPRPRAP------------PEPPDPGAPRPPPDPG 869
Score = 29.3 bits (64), Expect = 8.6
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 95 PGLPRPRPPWARPLSDGAPGWPPA----PGPGSPGPGPRLG 131
P P P PP P A PP+ PG G PGP+ G
Sbjct: 780 PAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPG 820
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 45.8 bits (107), Expect = 9e-05
Identities = 43/123 (34%), Positives = 52/123 (42%), Gaps = 25/123 (20%)
Query: 28 PGSEPPRPGQSPEPSPAPG-PGRRGGRGELARQIRARYEEVQRYSRGG--------PGPG 78
P E PG +P PS +PG PG G G++ Y+E++R+ R
Sbjct: 1405 PAGERGHPG-APGPSGSPGLPGVPGSMGDMVN-----YDEIKRFIRQEIIKMFDERMAYY 1458
Query: 79 AGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG-PGSPGPGPRLGCAALRN 137
R + M APG PG P DGAPG P APG PG PG R G L
Sbjct: 1459 TSRMQFPMEMAAAPGRPGPPG---------KDGAPGRPGAPGSPGLPGQIGREGRQGLPG 1509
Query: 138 VSG 140
V G
Sbjct: 1510 VRG 1512
Score = 42.0 bits (97), Expect = 0.001
Identities = 37/116 (31%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 34 RPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYS--RGGPGP-------GAGRPER 84
RPG S EP G +G +G+ + V + G PGP G GRP +
Sbjct: 701 RPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGK 760
Query: 85 RRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLGCAALRNVSG 140
PG PGLP + P P G G P PG G GP G L + G
Sbjct: 761 -------PGQPGLPGVQGP---PGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQG 806
Score = 40.8 bits (94), Expect = 0.003
Identities = 44/137 (32%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 17 LLGSVLNVLFAPGSEPPRPGQSPEPSPAPG-PGRRGGRGELARQIRARYEEVQRYSRGGP 75
L G+V ++ PG P+ Q PE PG PG+ G G Q + VQ G P
Sbjct: 730 LQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGV---QGPPGLKGVQG-EPGPP 785
Query: 76 GPGAGRPERRRLMDLAPGGPGLPRPR---PPWARPLSDGAPGWPPAPGP---------GS 123
G G P+ PG GLP PR P + G+PG A GP G
Sbjct: 786 GRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGP 845
Query: 124 PGPGPRLGCAALRNVSG 140
PG + G LR G
Sbjct: 846 PGRDGQQGQTGLRGTPG 862
Score = 40.8 bits (94), Expect = 0.003
Identities = 41/114 (35%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 31 EPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGAGRPERRRLMD 89
EP PG P P PG G RGE Q + + Q + +G PG PG P
Sbjct: 1118 EPGPPGSEGLPGP---PGPAGPRGERGPQGNSGEKGDQGF-QGQPGFPGPPGPPG----- 1168
Query: 90 LAPGGPGLPRPRPPWARPLSDGA---PGWPPAPGPGSPGPGPRLGCAALRNVSG 140
PG G P P P A S+G G P +PGP PGP G A L + G
Sbjct: 1169 -FPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGP--PGPPGIQGPAGLDGLDG 1219
Score = 39.7 bits (91), Expect = 0.006
Identities = 43/136 (31%), Positives = 49/136 (36%), Gaps = 48/136 (35%)
Query: 31 EPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDL 90
EP PGQ P PG G +GE R +G PGP
Sbjct: 1082 EPGPPGQPGYPGATGPPGLPGIKGE-------RGYTGSAGEKGEPGP------------- 1121
Query: 91 APGGPGLPRPRPPWARPLSD----------------GAPGWPPAPGP-------GSPG-P 126
PG GLP P P A P + G PG+P PGP GSPG P
Sbjct: 1122 -PGSEGLPGPPGP-AGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPP 1179
Query: 127 GPRL--GCAALRNVSG 140
GP+ G +R SG
Sbjct: 1180 GPQAEKGSEGIRGPSG 1195
Score = 38.9 bits (89), Expect = 0.011
Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 32 PPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGP-----GAGRPERRR 86
P +PG P P PG G G+ + + G PGP AG+ +
Sbjct: 1328 PGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFY-------GPPGPKGDPGAAGQKGQAG 1380
Query: 87 LMDLA--PGGPGLPRPRPPWARPLSDGAPGWPPAPGP-GSPG-PG 127
A PGGPG P P G G P APGP GSPG PG
Sbjct: 1381 EKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPG 1425
Score = 36.2 bits (82), Expect = 0.070
Identities = 44/133 (33%), Positives = 53/133 (39%), Gaps = 21/133 (15%)
Query: 27 APGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGP-------GA 79
APG P PG+ P PG G G++ R+ R V RG PG G
Sbjct: 1471 APGRPGP-PGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGV----RGLPGTKGEKGDIGI 1525
Query: 80 GRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG-PGSPGPGPRLGCAALRNV 138
G L PG PG P+ P + + + G G PG PG PGP + G A N
Sbjct: 1526 GIAGENGL----PGPPG-PQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNP 1580
Query: 139 S---GAQYMGSGY 148
S GA M Y
Sbjct: 1581 SDCFGAMPMEQQY 1593
Score = 35.0 bits (79), Expect = 0.16
Identities = 36/112 (32%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 31 EPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDL 90
+P G P P PG+RG G R S G PGP G P +
Sbjct: 1013 DPGCVGSPGLPGPPGLPGQRGEEGPPG----------MRGSPGPPGP-IGPPGFPGAVG- 1060
Query: 91 APGGPGLPRPRPPWARPLSDGAPGWPPAPG-PGSPGPGPRLGCAALRNVSGA 141
+PG PGL R G PG P PG PG+ GP G R +G+
Sbjct: 1061 SPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGS 1112
Score = 34.3 bits (77), Expect = 0.27
Identities = 41/132 (31%), Positives = 47/132 (35%), Gaps = 21/132 (15%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGEL-ARQIRARYEEVQRYS----RGGPGPGA--- 79
PG P+ G +P P GR G GE A + R G PGP
Sbjct: 1251 PGLPGPK-GDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISA 1309
Query: 80 -------GRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGP----GSPGPGP 128
G R L L PG PG P P P +DGA G PG G PGP
Sbjct: 1310 VGLKGDRGATGERGLAGL-PGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKG 1368
Query: 129 RLGCAALRNVSG 140
G A + +G
Sbjct: 1369 DPGAAGQKGQAG 1380
Score = 33.9 bits (76), Expect = 0.35
Identities = 31/111 (27%), Positives = 38/111 (34%), Gaps = 30/111 (27%)
Query: 32 PPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLA 91
P R GQ + PG +G RGE +G PG + + +
Sbjct: 846 PGRDGQQGQTGLRGTPGEKGPRGE----------------KGEPGECSCPSQGDLIFSGM 889
Query: 92 PGGPGLPRPRPPWARPLSDGAPGWPPAPG--PGSPGPGPRLGCAALRNVSG 140
PG PGL W W P P PG PGP G L+ V G
Sbjct: 890 PGAPGL------WM------GSSWQPGPQGPPGIPGPPGPPGVPGLQGVPG 928
Score = 33.9 bits (76), Expect = 0.35
Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 17/96 (17%)
Query: 27 APGSEPP--RPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPER 84
A G E P + G P P PG G +G+ + RA GGPG
Sbjct: 1348 AAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMP-------GGPGKSGS---- 1396
Query: 85 RRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPG 120
+ + P GP R P P G+PG P PG
Sbjct: 1397 --MGPVGPPGPAGERGHP--GAPGPSGSPGLPGVPG 1428
Score = 32.3 bits (72), Expect = 1.0
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 34 RPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAPG 93
+PG P P PG+ G G Q ++ S G GP +G P +PG
Sbjct: 1157 QPGFPGPPGPPGFPGKVGSPGPPGPQ-------AEKGSEGIRGP-SGLPG-------SPG 1201
Query: 94 GPGLPRPRPPWARPLSDGAPGWPPAPG-PGSPGPGPRLGCAALRNVSG 140
PG P + P DG G P G PG GP +G + +G
Sbjct: 1202 PPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTG 1249
Score = 31.6 bits (70), Expect = 1.7
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 36 GQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPG-PGA-GRPERRRLMDLAP- 92
G+S P+ PG G +G+ + E+ +G PG PG GRP + + P
Sbjct: 381 GESGALGPSGLPGSTGEKGQ-------KGEKGDGGIKGVPGKPGRDGRPGE--ICVIGPK 431
Query: 93 ---GGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPG-----PGPR 129
G PG P P G PG P PG+PG PGP+
Sbjct: 432 GQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPK 476
Score = 31.6 bits (70), Expect = 1.7
Identities = 31/109 (28%), Positives = 37/109 (33%), Gaps = 13/109 (11%)
Query: 34 RPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGP--GAGRPERRRLMDLA 91
+PG +P PA PG G G + + G PGP GRP
Sbjct: 1223 KPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPG-PKGDCGKPGPPGSTGRP--------- 1272
Query: 92 PGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLGCAALRNVSG 140
G G P P RP G G P PG P +G R +G
Sbjct: 1273 -GAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATG 1320
Score = 30.0 bits (66), Expect = 5.0
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 27/128 (21%)
Query: 23 NVLFAPGSEPPRPGQSPEPSPAPG-PGRRGGRGELARQ-------IRARYEEVQRYSRGG 74
N + PG P+ G+ +P PA G PG +G +GE + A++ + G
Sbjct: 519 NFVGLPGKPGPK-GEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTGASGD 577
Query: 75 PG-PGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGP-GSPGPGPRLGC 132
G PG G P PG G+P + G G GP GSPGP +G
Sbjct: 578 VGSPGFGLPG-------LPGRAGVPGLK---------GEKGNFGEAGPAGSPGPPGPVGP 621
Query: 133 AALRNVSG 140
A ++ G
Sbjct: 622 AGIKGAKG 629
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 45.8 bits (107), Expect = 9e-05
Identities = 35/102 (34%), Positives = 39/102 (38%), Gaps = 31/102 (30%)
Query: 35 PGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAPGG 94
PGQ+ P PA PG +G RG+ G GP G
Sbjct: 202 PGQTGPPGPAGPPGSKGDRGQ----------------TGEKGPA--------------GP 231
Query: 95 PGLPRPRPPWARPLSDGAPGWPPAPGP-GSPGPGPRLGCAAL 135
PGL P P P G PG P PGP G+PGP P AL
Sbjct: 232 PGLLGPPGPRGLPGEMGRPGPPGPPGPAGNPGPSPNSPQGAL 273
Score = 33.1 bits (74), Expect = 0.59
Identities = 36/126 (28%), Positives = 41/126 (32%), Gaps = 29/126 (23%)
Query: 32 PPRPGQSPEPSP----------APGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGR 81
PP P +P PSP P + G LA I V G PGP
Sbjct: 255 PPGPAGNPGPSPNSPQGALYSLQPPTDKDNGDSRLASAI------VDTVLAGVPGPRG-- 306
Query: 82 PERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRLGCAALRNVSGA 141
PG PG P PR P P + G+ G A G+ GP G A
Sbjct: 307 ---------PPGPPGPPGPRGPPGPPGTPGSQGL--AGERGTVGPSGEPGVKGEEGEKAA 355
Query: 142 QYMGSG 147
G G
Sbjct: 356 TAEGEG 361
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 45.4 bits (106), Expect = 1e-04
Identities = 37/108 (34%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
PG + P P A GPG G G GPGPG P R
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGP------------------GPGPGPAPPNYSRP 252
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGP-GPRLGCAA 134
+ GGP +P P P P G PG PP GP P P GP AA
Sbjct: 253 HGM--GGPNMPPPGPSGVPP---GMPGQPPG-GPPKPWPEGPMANAAA 294
Score = 33.1 bits (74), Expect = 0.59
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 33 PRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAP 92
P G +P P P+PGPG G + GP PG +M +P
Sbjct: 6 PPLGGTPRPGPSPGPGPSPG------------------AMLGPSPGPSPGSAHSMMGPSP 47
Query: 93 GGPGLPRPRPPWARPLSDGAPGWP 116
G P P P + G G+P
Sbjct: 48 GPPSAGHPIP------TQGPGGYP 65
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 45.4 bits (106), Expect = 1e-04
Identities = 37/108 (34%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
PG + P P A GPG G G GPGPG P R
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGP------------------GPGPGPAPPNYSRP 252
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGP-GPRLGCAA 134
+ GGP +P P P P G PG PP GP P P GP AA
Sbjct: 253 HGM--GGPNMPPPGPSGVPP---GMPGQPPG-GPPKPWPEGPMANAAA 294
Score = 33.1 bits (74), Expect = 0.59
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 33 PRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAP 92
P G +P P P+PGPG G + GP PG +M +P
Sbjct: 6 PPLGGTPRPGPSPGPGPSPG------------------AMLGPSPGPSPGSAHSMMGPSP 47
Query: 93 GGPGLPRPRPPWARPLSDGAPGWP 116
G P P P + G G+P
Sbjct: 48 GPPSAGHPIP------TQGPGGYP 65
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 45.4 bits (106), Expect = 1e-04
Identities = 37/108 (34%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
PG + P P A GPG G G GPGPG P R
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGP------------------GPGPGPAPPNYSRP 252
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGP-GPRLGCAA 134
+ GGP +P P P P G PG PP GP P P GP AA
Sbjct: 253 HGM--GGPNMPPPGPSGVPP---GMPGQPPG-GPPKPWPEGPMANAAA 294
Score = 33.1 bits (74), Expect = 0.59
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 33 PRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAP 92
P G +P P P+PGPG G + GP PG +M +P
Sbjct: 6 PPLGGTPRPGPSPGPGPSPG------------------AMLGPSPGPSPGSAHSMMGPSP 47
Query: 93 GGPGLPRPRPPWARPLSDGAPGWP 116
G P P P + G G+P
Sbjct: 48 GPPSAGHPIP------TQGPGGYP 65
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 45.4 bits (106), Expect = 1e-04
Identities = 37/108 (34%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
PG + P P A GPG G G GPGPG P R
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGP------------------GPGPGPAPPNYSRP 252
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGP-GPRLGCAA 134
+ GGP +P P P P G PG PP GP P P GP AA
Sbjct: 253 HGM--GGPNMPPPGPSGVPP---GMPGQPPG-GPPKPWPEGPMANAAA 294
Score = 33.1 bits (74), Expect = 0.59
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 33 PRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAP 92
P G +P P P+PGPG G + GP PG +M +P
Sbjct: 6 PPLGGTPRPGPSPGPGPSPG------------------AMLGPSPGPSPGSAHSMMGPSP 47
Query: 93 GGPGLPRPRPPWARPLSDGAPGWP 116
G P P P + G G+P
Sbjct: 48 GPPSAGHPIP------TQGPGGYP 65
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 45.4 bits (106), Expect = 1e-04
Identities = 37/108 (34%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
PG + P P A GPG G G GPGPG P R
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGP------------------GPGPGPAPPNYSRP 252
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGP-GPRLGCAA 134
+ GGP +P P P P G PG PP GP P P GP AA
Sbjct: 253 HGM--GGPNMPPPGPSGVPP---GMPGQPPG-GPPKPWPEGPMANAAA 294
Score = 33.1 bits (74), Expect = 0.59
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 33 PRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAP 92
P G +P P P+PGPG G + GP PG +M +P
Sbjct: 6 PPLGGTPRPGPSPGPGPSPG------------------AMLGPSPGPSPGSAHSMMGPSP 47
Query: 93 GGPGLPRPRPPWARPLSDGAPGWP 116
G P P P + G G+P
Sbjct: 48 GPPSAGHPIP------TQGPGGYP 65
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 45.4 bits (106), Expect = 1e-04
Identities = 37/108 (34%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
PG + P P A GPG G G GPGPG P R
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGP------------------GPGPGPAPPNYSRP 252
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGP-GPRLGCAA 134
+ GGP +P P P P G PG PP GP P P GP AA
Sbjct: 253 HGM--GGPNMPPPGPSGVPP---GMPGQPPG-GPPKPWPEGPMANAAA 294
Score = 33.1 bits (74), Expect = 0.59
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 33 PRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAP 92
P G +P P P+PGPG G + GP PG +M +P
Sbjct: 6 PPLGGTPRPGPSPGPGPSPG------------------AMLGPSPGPSPGSAHSMMGPSP 47
Query: 93 GGPGLPRPRPPWARPLSDGAPGWP 116
G P P P + G G+P
Sbjct: 48 GPPSAGHPIP------TQGPGGYP 65
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 45.4 bits (106), Expect = 1e-04
Identities = 37/108 (34%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 28 PGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRL 87
PG + P P A GPG G G GPGPG P R
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGPGP------------------GPGPGPAPPNYSRP 252
Query: 88 MDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGP-GPRLGCAA 134
+ GGP +P P P P G PG PP GP P P GP AA
Sbjct: 253 HGM--GGPNMPPPGPSGVPP---GMPGQPPG-GPPKPWPEGPMANAAA 294
Score = 33.1 bits (74), Expect = 0.59
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 33 PRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRRLMDLAP 92
P G +P P P+PGPG G + GP PG +M +P
Sbjct: 6 PPLGGTPRPGPSPGPGPSPG------------------AMLGPSPGPSPGSAHSMMGPSP 47
Query: 93 GGPGLPRPRPPWARPLSDGAPGWP 116
G P P P + G G+P
Sbjct: 48 GPPSAGHPIP------TQGPGGYP 65
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 45.4 bits (106), Expect = 1e-04
Identities = 39/108 (36%), Positives = 45/108 (41%), Gaps = 29/108 (26%)
Query: 28 PGSEPPRPGQ-SPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRR 86
P PPRPG SP P PAP PG + AR +R GGPG GAG R
Sbjct: 125 PRPPPPRPGMHSPPPRPAPSPGT--WESQPARSVRL----------GGPGGGAGGAGGGR 172
Query: 87 LMDLAPGGPGL------PRPRPPWARPLSDGAPGWPPAPGPGSPGPGP 128
+++ P + P P PP A L D W G GSP P
Sbjct: 173 VLEC----PSIRITSISPTPEPPAA--LEDNPDAW----GDGSPRDYP 210
Score = 33.9 bits (76), Expect = 0.35
Identities = 39/140 (27%), Positives = 44/140 (31%), Gaps = 49/140 (35%)
Query: 26 FAPGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERR 85
F GS P P SP P P +S GP PG PE
Sbjct: 272 FGLGSPLPSPRASPRPWTPEDP----------------------WSLYGPSPGGRGPEDS 309
Query: 86 RLMDLAPGG-PGLPRPRPPWA--RPLSDGAPGW---------------------PPAP-- 119
L+ APG P PRP P R S G P PP P
Sbjct: 310 WLLLSAPGPTPASPRPASPCGKRRYSSSGTPSSASPALSRRGSLGEEGSEPPPPPPLPLA 369
Query: 120 -GPGSPGPGPRLGCAALRNV 138
PGSPGP +G ++
Sbjct: 370 RDPGSPGPFDYVGAPPAESI 389
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 45.4 bits (106), Expect = 1e-04
Identities = 39/108 (36%), Positives = 45/108 (41%), Gaps = 29/108 (26%)
Query: 28 PGSEPPRPGQ-SPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERRR 86
P PPRPG SP P PAP PG + AR +R GGPG GAG R
Sbjct: 62 PRPPPPRPGMHSPPPRPAPSPGT--WESQPARSVRL----------GGPGGGAGGAGGGR 109
Query: 87 LMDLAPGGPGL------PRPRPPWARPLSDGAPGWPPAPGPGSPGPGP 128
+++ P + P P PP A L D W G GSP P
Sbjct: 110 VLEC----PSIRITSISPTPEPPAA--LEDNPDAW----GDGSPRDYP 147
Score = 33.9 bits (76), Expect = 0.35
Identities = 39/140 (27%), Positives = 44/140 (31%), Gaps = 49/140 (35%)
Query: 26 FAPGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEEVQRYSRGGPGPGAGRPERR 85
F GS P P SP P P +S GP PG PE
Sbjct: 209 FGLGSPLPSPRASPRPWTPEDP----------------------WSLYGPSPGGRGPEDS 246
Query: 86 RLMDLAPGG-PGLPRPRPPWA--RPLSDGAPGW---------------------PPAP-- 119
L+ APG P PRP P R S G P PP P
Sbjct: 247 WLLLSAPGPTPASPRPASPCGKRRYSSSGTPSSASPALSRRGSLGEEGSEPPPPPPLPLA 306
Query: 120 -GPGSPGPGPRLGCAALRNV 138
PGSPGP +G ++
Sbjct: 307 RDPGSPGPFDYVGAPPAESI 326
>gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens]
Length = 196
Score = 45.4 bits (106), Expect = 1e-04
Identities = 36/107 (33%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
Query: 28 PGSEPPRPGQSPEPSPA---PGPGRRGGRGELARQIRARYEEVQRYSRG-GPGPGAGRPE 83
PG E P P +P P P P R R +L R+ R E SRG G GP A R
Sbjct: 19 PGPETPPPAPAPTARPRLRLPAPDWRARRADLTRRKGLRRGEPG--SRGLGEGPAAARRP 76
Query: 84 RRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGPGSPGPGPRL 130
+ + +D P G +GAP + A PG GP P L
Sbjct: 77 QVQSIDTTPSG---------------EGAPSFSRAQRPGRSGPSPSL 108
Score = 30.0 bits (66), Expect = 5.0
Identities = 30/103 (29%), Positives = 35/103 (33%), Gaps = 12/103 (11%)
Query: 26 FAPGSEPPRPGQSPEPSPAPGPGRRGGRGEL---ARQIRARYEEVQRYSRGG-------- 74
F+ P R G SP + P PGR G L RQ E R SR
Sbjct: 93 FSRAQRPGRSGPSPSLASDPAPGRGAAWGSLRPGKRQQALESEAGGRASREARAAEVRER 152
Query: 75 -PGPGAGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWP 116
PG G+ P RR + G P + S AP P
Sbjct: 153 IPGGGSWCPGRRDWLTPPCAGSSSQLTEPSVIQQPSISAPNMP 195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,754,190
Number of Sequences: 37866
Number of extensions: 1679098
Number of successful extensions: 20444
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 1014
Number of HSP's that attempted gapping in prelim test: 11818
Number of HSP's gapped (non-prelim): 6051
length of query: 493
length of database: 18,247,518
effective HSP length: 106
effective length of query: 387
effective length of database: 14,233,722
effective search space: 5508450414
effective search space used: 5508450414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.