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Search of human proteins with 208431793
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208431793 dynactin 4 (p62) isoform a [Homo sapiens]
(467 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208431793 dynactin 4 (p62) isoform a [Homo sapiens] 952 0.0
gi|7705893 dynactin 4 (p62) isoform b [Homo sapiens] 931 0.0
gi|208431795 dynactin 4 (p62) isoform c [Homo sapiens] 813 0.0
gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi... 33 0.42
gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [H... 32 1.2
gi|148922852 general transcription factor IIH, polypeptide 2C [H... 32 1.6
gi|148922900 general transcription factor IIH, polypeptide 2B [H... 32 1.6
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 32 1.6
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 32 1.6
gi|6681762 general transcription factor IIH, polypeptide 2, 44kD... 32 1.6
gi|109809737 general transcription factor IIH, polypeptide 2D [H... 32 1.6
gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo sa... 31 2.1
gi|50659100 regeneration associated muscle protease isoform b [H... 31 2.7
gi|50659098 regeneration associated muscle protease isoform a [H... 31 2.7
gi|148539876 beta-adrenergic receptor kinase 1 [Homo sapiens] 30 3.6
gi|46370066 exostosin 1 [Homo sapiens] 30 6.1
gi|153082722 intercellular adhesion molecule 2 precursor [Homo s... 30 6.1
gi|153082719 intercellular adhesion molecule 2 precursor [Homo s... 30 6.1
gi|153082699 intercellular adhesion molecule 2 precursor [Homo s... 30 6.1
gi|153082686 intercellular adhesion molecule 2 precursor [Homo s... 30 6.1
gi|153082696 intercellular adhesion molecule 2 precursor [Homo s... 30 6.1
gi|13376064 zinc finger protein 408 [Homo sapiens] 30 6.1
gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III ... 29 8.0
gi|52345387 meteorin, glial cell differentiation regulator-like ... 29 8.0
>gi|208431793 dynactin 4 (p62) isoform a [Homo sapiens]
Length = 467
Score = 952 bits (2461), Expect = 0.0
Identities = 467/467 (100%), Positives = 467/467 (100%)
Query: 1 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 60
MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 60
Query: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 121 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSQ 180
VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSQ
Sbjct: 121 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSQ 180
Query: 181 HTIHVVDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY 240
HTIHVVDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY
Sbjct: 181 HTIHVVDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY 240
Query: 241 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS 300
TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS
Sbjct: 241 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS 300
Query: 301 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN 360
IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN
Sbjct: 301 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN 360
Query: 361 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG 420
STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG
Sbjct: 361 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG 420
Query: 421 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 467
EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
Sbjct: 421 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 467
>gi|7705893 dynactin 4 (p62) isoform b [Homo sapiens]
Length = 460
Score = 931 bits (2405), Expect = 0.0
Identities = 460/467 (98%), Positives = 460/467 (98%), Gaps = 7/467 (1%)
Query: 1 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 60
MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 60
Query: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 121 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSQ 180
VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFS
Sbjct: 121 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFS- 179
Query: 181 HTIHVVDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY 240
DKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY
Sbjct: 180 ------DKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY 233
Query: 241 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS 300
TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS
Sbjct: 234 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS 293
Query: 301 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN 360
IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN
Sbjct: 294 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN 353
Query: 361 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG 420
STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG
Sbjct: 354 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG 413
Query: 421 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 467
EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
Sbjct: 414 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 460
>gi|208431795 dynactin 4 (p62) isoform c [Homo sapiens]
Length = 403
Score = 813 bits (2101), Expect = 0.0
Identities = 403/410 (98%), Positives = 403/410 (98%), Gaps = 7/410 (1%)
Query: 58 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT 117
MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT
Sbjct: 1 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT 60
Query: 118 SRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLA 177
SRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLA
Sbjct: 61 SRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLA 120
Query: 178 FSQHTIHVVDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPE 237
FS DKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPE
Sbjct: 121 FS-------DKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPE 173
Query: 238 DYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFN 297
DYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFN
Sbjct: 174 DYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFN 233
Query: 298 PTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPD 357
PTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPD
Sbjct: 234 PTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPD 293
Query: 358 DINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQR 417
DINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQR
Sbjct: 294 DINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQR 353
Query: 418 EEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 467
EEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
Sbjct: 354 EEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 403
>gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing
protein) [Homo sapiens]
Length = 543
Score = 33.5 bits (75), Expect = 0.42
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 191 LGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPE 237
LGT+LQ PR ++S L G+ L ++++EI P + E PE
Sbjct: 166 LGTKLQDPRIMTTLSVLLGVDLGSMDEEEEIATPPPPPPPKKETKPE 212
>gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [Homo
sapiens]
Length = 802
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 8 DRVL-YLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLK 66
D VL +LV+G ++ L Q + C C EL + V+ E + C CL+ A+
Sbjct: 711 DEVLSHLVEGPNFLKK-LEQSFMCVCCQEL-VYQPVTTECFHNVCKDCLQRSFKAQV--- 765
Query: 67 KNRCANCFDCPGCMHTLSTRATSISTQL 94
F CP C H L I ++
Sbjct: 766 -------FSCPACRHDLGQNYIMIPNEI 786
>gi|148922852 general transcription factor IIH, polypeptide 2C [Homo
sapiens]
Length = 395
Score = 31.6 bits (70), Expect = 1.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 8 DRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDS-HYCPSCLENMPS 60
+R Y QGE K + +Y C C + ++C DS H CP C+ +P+
Sbjct: 342 ERFCYGCQGELKDQ----HVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIHKIPA 391
>gi|148922900 general transcription factor IIH, polypeptide 2B [Homo
sapiens]
Length = 395
Score = 31.6 bits (70), Expect = 1.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 8 DRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDS-HYCPSCLENMPS 60
+R Y QGE K + +Y C C + ++C DS H CP C+ +P+
Sbjct: 342 ERFCYGCQGELKDQ----HVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIHKIPA 391
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 1.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 64 KLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACG 112
+L ++RC+N +D P + T A + T P DP + A Y CG
Sbjct: 100 RLDQSRCSN-YDTPAWVQTGRPPARARDTAAPRDPGRERSHTAVYAVCG 147
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 31.6 bits (70), Expect = 1.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 64 KLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACG 112
+L ++RC+N +D P + T A + T P DP + A Y CG
Sbjct: 100 RLDQSRCSN-YDTPAWVQTGRPPARARDTAAPRDPGRERSHTAVYAVCG 147
>gi|6681762 general transcription factor IIH, polypeptide 2, 44kD
subunit [Homo sapiens]
Length = 395
Score = 31.6 bits (70), Expect = 1.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 8 DRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDS-HYCPSCLENMPS 60
+R Y QGE K + +Y C C + ++C DS H CP C+ +P+
Sbjct: 342 ERFCYGCQGELKDQ----HVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIHKIPA 391
>gi|109809737 general transcription factor IIH, polypeptide 2D [Homo
sapiens]
Length = 395
Score = 31.6 bits (70), Expect = 1.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 8 DRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDS-HYCPSCLENMPS 60
+R Y QGE K + +Y C C + ++C DS H CP C+ +P+
Sbjct: 342 ERFCYGCQGELKDQ----HVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIHKIPA 391
>gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo
sapiens]
Length = 1336
Score = 31.2 bits (69), Expect = 2.1
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 52 PSCLENMPSAEAKLKKNRCANCFDCPGCMHT-----LSTRATSISTQLPDDPA 99
P CL P + KN C CPGC L ++ +S Q P++P+
Sbjct: 432 PPCLSPEPQETLQKVKNVLEQCKTCPGCPQEPASWGLCAASSDVSLQDPEEPS 484
>gi|50659100 regeneration associated muscle protease isoform b
[Homo sapiens]
Length = 720
Score = 30.8 bits (68), Expect = 2.7
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 12/53 (22%)
Query: 30 CRYCSELRSLECV---SHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGC 79
CR C E +ECV EV + P C + ++N C +C PGC
Sbjct: 42 CRECCEYDQIECVCPGKREVVGYTIPCC---------RNEENECDSCLIHPGC 85
>gi|50659098 regeneration associated muscle protease isoform a
[Homo sapiens]
Length = 737
Score = 30.8 bits (68), Expect = 2.7
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 12/53 (22%)
Query: 30 CRYCSELRSLECV---SHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGC 79
CR C E +ECV EV + P C + ++N C +C PGC
Sbjct: 42 CRECCEYDQIECVCPGKREVVGYTIPCC---------RNEENECDSCLIHPGC 85
>gi|148539876 beta-adrenergic receptor kinase 1 [Homo sapiens]
Length = 689
Score = 30.4 bits (67), Expect = 3.6
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 140 HTQRMNKLIEYYQQLAQKEKVERDRKKLARRR 171
H + L+E+Y+++ + EK+E + +++AR R
Sbjct: 75 HLEEARPLVEFYEEIKKYEKLETEEERVARSR 106
>gi|46370066 exostosin 1 [Homo sapiens]
Length = 746
Score = 29.6 bits (65), Expect = 6.1
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 16/64 (25%)
Query: 44 HEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTM 103
H + SHY P+ L+NM ++ ANC D L S T+LP P K T
Sbjct: 631 HYLYSHYLPASLKNM--------VDQLANCED------ILMNFLVSAVTKLP--PIKVTQ 674
Query: 104 KKAY 107
KK Y
Sbjct: 675 KKQY 678
>gi|153082722 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 29.6 bits (65), Expect = 6.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 340 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 374
V N++H T+ +C G + +NS V PP++++L
Sbjct: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
>gi|153082719 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 29.6 bits (65), Expect = 6.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 340 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 374
V N++H T+ +C G + +NS V PP++++L
Sbjct: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
>gi|153082699 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 29.6 bits (65), Expect = 6.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 340 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 374
V N++H T+ +C G + +NS V PP++++L
Sbjct: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
>gi|153082686 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 29.6 bits (65), Expect = 6.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 340 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 374
V N++H T+ +C G + +NS V PP++++L
Sbjct: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
>gi|153082696 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 29.6 bits (65), Expect = 6.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 340 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 374
V N++H T+ +C G + +NS V PP++++L
Sbjct: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
>gi|13376064 zinc finger protein 408 [Homo sapiens]
Length = 720
Score = 29.6 bits (65), Expect = 6.1
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 28 YFCRYCS-------ELRSLECVSHEVDSHYCPSC---LENMPSAEAKLKKNRCANCFDCP 77
Y C +C+ ELR +SH ++H CP C L + + A + + F CP
Sbjct: 524 YRCPHCADAFPQLPELRR-HLISHTGEAHLCPVCGKALRDPHTLRAHERLHSGERPFPCP 582
Query: 78 GC--MHTLSTR-ATSISTQLPDDP 98
C +TL+T+ + + L D P
Sbjct: 583 QCGRAYTLATKLRRHLKSHLEDKP 606
>gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III
isoform 2 [Homo sapiens]
Length = 2098
Score = 29.3 bits (64), Expect = 8.0
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 5/107 (4%)
Query: 94 LPDDPAKTTMKKAYYLACGFCRWTSR--DVGMADKSVASGGWQEPENP-HTQRMNKLIEY 150
L D + K AY R+ + G ++ SG W P+ P TQ + Y
Sbjct: 33 LTPDQDEPPFKSAYSSFVNLFRFNKERAEGGQGEQQPLSGSWTSPQLPSRTQSVRSPTPY 92
Query: 151 YQQLAQKEKVERDRKKLARRRNYMPLAFSQHTIHVVDKYGLGTRLQR 197
+QL E+++R L RR P V L T L+R
Sbjct: 93 KKQL--NEELQRRSSALDTRRKAEPTFGGHDPRTAVQLRSLSTVLKR 137
>gi|52345387 meteorin, glial cell differentiation regulator-like
[Homo sapiens]
Length = 311
Score = 29.3 bits (64), Expect = 8.0
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 408 GIFIKVTPQREEGEVTVCFKMK-------HDFKNLAAPIRPIEESD 446
G+F++ TPQ++ G T F+ + D L+AP RP +++
Sbjct: 150 GLFVEATPQQDIGRRTTGFQYELVRRHRASDLHELSAPCRPCSDTE 195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,414,794
Number of Sequences: 37866
Number of extensions: 830843
Number of successful extensions: 2351
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2338
Number of HSP's gapped (non-prelim): 28
length of query: 467
length of database: 18,247,518
effective HSP length: 106
effective length of query: 361
effective length of database: 14,233,722
effective search space: 5138373642
effective search space used: 5138373642
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.