Guide to the Human Genome
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Name: DCTN4 Sequence: fasta or formatted (403aa) NCBI GI: 208431795
Description:

dynactin 4 (p62) isoform c

Referenced in:

Dynein and Dynactin

Other entries for this name:
alt prot [467aa] dynactin 4 (p62) isoform a
alt prot [460aa] dynactin 4 (p62) isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         29           3
 C cysteine            2.7         11           1
 D aspartate           5.5         22           2
 E glutamate           8.2         33           2
 F phenylalanine       3.0         12           1
 G glycine             4.0         16           2
 H histidine           2.0          8           1
 I isoleucine          4.7         19           2
 K lysine              7.9         32           2
 L leucine             9.7         39           2
 M methionine          2.2          9           1
 N asparagine          3.7         15           1
 P proline             7.4         30           2
 Q glutamine           5.2         21           2
 R arginine            6.0         24           3
 S serine              5.0         20           1
 T threonine           6.0         24           2
 V valine              6.0         24           3
 W tryptophan          0.7          3           1
 Y tyrosine            3.0         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dynactin 4 (p62) isoform c 
DCTN4                 1.000   dynactin 4 (p62) isoform b 
DCTN4                 0.991   dynactin 4 (p62) isoform a 
STIP1                 0.010   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
LOC440829             0.009   PREDICTED: transmembrane protein 46-like 
LOC440829             0.009   PREDICTED: transmembrane protein 46-like 
KIAA1109              0.008   fragile site-associated protein 
PTRF                  0.006   polymerase I and transcript release factor 
ADRBK1                0.006   beta-adrenergic receptor kinase 1 
ICAM2                 0.006   intercellular adhesion molecule 2 precursor 
ICAM2                 0.006   intercellular adhesion molecule 2 precursor 
ICAM2                 0.006   intercellular adhesion molecule 2 precursor 
ICAM2                 0.006   intercellular adhesion molecule 2 precursor 
ICAM2                 0.006   intercellular adhesion molecule 2 precursor 
METRNL                0.005   meteorin, glial cell differentiation regulator-like ...
SLTM                  0.005   modulator of estrogen induced transcription isoform ...
SLTM                  0.005   modulator of estrogen induced transcription isoform ...
RPGRIP1L              0.005   RPGRIP1-like isoform b 
RPGRIP1L              0.005   RPGRIP1-like isoform a 
HYDIN                 0.005   hydrocephalus inducing isoform a 
C17orf47              0.005   hypothetical protein LOC284083 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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