Guide to the Human Genome
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Name: DCTN4 Sequence: fasta or formatted (467aa) NCBI GI: 208431793
Description:

dynactin 4 (p62) isoform a

Referenced in:

Dynein and Dynactin

Other entries for this name:
alt prot [403aa] dynactin 4 (p62) isoform c
alt prot [460aa] dynactin 4 (p62) isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         31           3
 C cysteine            3.4         16           1
 D aspartate           5.1         24           2
 E glutamate           8.1         38           2
 F phenylalanine       2.8         13           1
 G glycine             3.6         17           2
 H histidine           2.6         12           1
 I isoleucine          4.3         20           2
 K lysine              7.3         34           2
 L leucine            10.3         48           2
 M methionine          2.1         10           1
 N asparagine          3.4         16           1
 P proline             6.9         32           2
 Q glutamine           5.4         25           2
 R arginine            6.0         28           3
 S serine              6.0         28           1
 T threonine           5.4         25           2
 V valine              6.6         31           3
 W tryptophan          0.6          3           1
 Y tyrosine            3.4         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dynactin 4 (p62) isoform a 
DCTN4                 0.977   dynactin 4 (p62) isoform b 
DCTN4                 0.850   dynactin 4 (p62) isoform c 
STIP1                 0.009   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
UHRF2                 0.008   ubiquitin-like with PHD and ring finger domains 2 [H...
GTF2H2C               0.008   general transcription factor IIH, polypeptide 2C [H...
GTF2H2B               0.008   general transcription factor IIH, polypeptide 2B [H...
LOC440829             0.008   PREDICTED: transmembrane protein 46-like 
LOC440829             0.008   PREDICTED: transmembrane protein 46-like 
GTF2H2                0.008   general transcription factor IIH, polypeptide 2, 44kD...
GTF2H2D               0.008   general transcription factor IIH, polypeptide 2D [H...
SH3TC1                0.006   SH3 domain and tetratricopeptide repeats 1 
PAMR1                 0.006   regeneration associated muscle protease isoform b [H...
PAMR1                 0.006   regeneration associated muscle protease isoform a [H...
ADRBK1                0.005   beta-adrenergic receptor kinase 1 
EXT1                  0.005   exostosin 1 
ICAM2                 0.005   intercellular adhesion molecule 2 precursor 
ICAM2                 0.005   intercellular adhesion molecule 2 precursor 
ICAM2                 0.005   intercellular adhesion molecule 2 precursor 
ICAM2                 0.005   intercellular adhesion molecule 2 precursor 
ICAM2                 0.005   intercellular adhesion molecule 2 precursor 
ZNF408                0.005   zinc finger protein 408 
PIKFYVE               0.004   phosphatidylinositol-3-phosphate 5-kinase type III ...
METRNL                0.004   meteorin, glial cell differentiation regulator-like ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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