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Search of human proteins with 207028748
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|207028748 N-myc downstream regulated 1 [Homo sapiens]
(394 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|207028748 N-myc downstream regulated 1 [Homo sapiens] 802 0.0
gi|37655183 N-myc downstream regulated 1 [Homo sapiens] 802 0.0
gi|14165266 N-myc downstream-regulated gene 3 isoform a [Homo sa... 481 e-136
gi|32130514 N-myc downstream-regulated gene 3 isoform b [Homo sa... 469 e-132
gi|194440722 NDRG family member 4 isoform 2 [Homo sapiens] 445 e-125
gi|13430864 NDRG family member 4 isoform 1 [Homo sapiens] 445 e-125
gi|14165264 NDRG family member 4 isoform 1 [Homo sapiens] 445 e-125
gi|42544224 N-myc downstream-regulated gene 2 isoform b [Homo sa... 399 e-111
gi|42544222 N-myc downstream-regulated gene 2 isoform a [Homo sa... 399 e-111
gi|42544220 N-myc downstream-regulated gene 2 isoform a [Homo sa... 399 e-111
gi|42544218 N-myc downstream-regulated gene 2 isoform b [Homo sa... 399 e-111
gi|42544216 N-myc downstream-regulated gene 2 isoform a [Homo sa... 399 e-111
gi|10280620 N-myc downstream-regulated gene 2 isoform b [Homo sa... 399 e-111
gi|42544213 N-myc downstream-regulated gene 2 isoform b [Homo sa... 399 e-111
gi|42544211 N-myc downstream-regulated gene 2 isoform a [Homo sa... 399 e-111
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 35 0.12
gi|23200008 abhydrolase domain containing 11 isoform 1 [Homo sap... 35 0.12
gi|23200012 abhydrolase domain containing 11 isoform 2 [Homo sap... 35 0.12
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 35 0.15
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 35 0.15
gi|148233596 LPS-responsive vesicle trafficking, beach and ancho... 34 0.20
gi|239742514 PREDICTED: similar to Putative POM121-like protein ... 34 0.26
gi|167234419 thyroid hormone receptor associated protein 3 [Homo... 33 0.34
gi|239742580 PREDICTED: similar to Putative POM121-like protein ... 33 0.45
gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo ... 32 1.00
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 32 1.00
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 32 1.00
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 31 1.7
gi|151301154 mucin 6, gastric [Homo sapiens] 31 1.7
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 31 2.2
>gi|207028748 N-myc downstream regulated 1 [Homo sapiens]
Length = 394
Score = 802 bits (2072), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MSREMQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVIL 60
MSREMQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVIL
Sbjct: 1 MSREMQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVIL 60
Query: 61 TYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAE 120
TYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAE
Sbjct: 61 TYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAE 120
Query: 121 MLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKI 180
MLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKI
Sbjct: 121 MLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKI 180
Query: 181 SGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIE 240
SGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIE
Sbjct: 181 SGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIE 240
Query: 241 RPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAK 300
RPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAK
Sbjct: 241 RPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAK 300
Query: 301 LAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGT 360
LAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGT
Sbjct: 301 LAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGT 360
Query: 361 RSRSHTSEGAHLDITPNSGAAGNSAGPKSMEVSC 394
RSRSHTSEGAHLDITPNSGAAGNSAGPKSMEVSC
Sbjct: 361 RSRSHTSEGAHLDITPNSGAAGNSAGPKSMEVSC 394
>gi|37655183 N-myc downstream regulated 1 [Homo sapiens]
Length = 394
Score = 802 bits (2072), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MSREMQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVIL 60
MSREMQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVIL
Sbjct: 1 MSREMQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVIL 60
Query: 61 TYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAE 120
TYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAE
Sbjct: 61 TYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAE 120
Query: 121 MLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKI 180
MLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKI
Sbjct: 121 MLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKI 180
Query: 181 SGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIE 240
SGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIE
Sbjct: 181 SGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIE 240
Query: 241 RPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAK 300
RPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAK
Sbjct: 241 RPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAK 300
Query: 301 LAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGT 360
LAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGT
Sbjct: 301 LAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGT 360
Query: 361 RSRSHTSEGAHLDITPNSGAAGNSAGPKSMEVSC 394
RSRSHTSEGAHLDITPNSGAAGNSAGPKSMEVSC
Sbjct: 361 RSRSHTSEGAHLDITPNSGAAGNSAGPKSMEVSC 394
>gi|14165266 N-myc downstream-regulated gene 3 isoform a [Homo
sapiens]
Length = 375
Score = 481 bits (1239), Expect = e-136
Identities = 236/359 (65%), Positives = 289/359 (80%), Gaps = 5/359 (1%)
Query: 4 EMQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVILTYH 63
E+QDV L E+KPL+ + T Q+FD QE DIET HG VHVT+ G PKGNRPVILTYH
Sbjct: 3 ELQDVQLTEIKPLLND-KNGTRNFQDFDCQEHDIETTHGVVHVTIRGLPKGNRPVILTYH 61
Query: 64 DIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAEMLP 123
DIG+NHK+C+N FN+EDMQEITQHFAVCHVDAPGQQ+GA SFP GY YP+MD+LAEMLP
Sbjct: 62 DIGLNHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPTGYQYPTMDELAEMLP 121
Query: 124 GVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKISGW 183
VL LKSIIG+G GAGAYIL+RFALN+PE+VEGLVLINV+PCA+GW+DWAASK+SG
Sbjct: 122 PVLTHLSLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGL 181
Query: 184 TQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIERPM 243
T + D++++H FG+EE+Q+N++++ TYR HI D+N NL LF+N+YN RRDLEIERP+
Sbjct: 182 TTNVVDIILAHHFGQEELQANLDLIQTYRMHIAQDINQDNLQLFLNSYNGRRDLEIERPI 241
Query: 244 PGTH---TVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAK 300
G + + TL+C LLVVGD+SPAV+AVVECNS+L+P TTLLKMADCGGLPQ+ QP K
Sbjct: 242 LGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPINTTLLKMADCGGLPQVVQPGK 301
Query: 301 LAEAFKYFVQGMGYMPSASMTRLMRSRT-ASGSSVTSLDGTRSRSHTSEGTRSRSHTSE 358
L EAFKYF+QGMGY+PSASMTRL RSRT ++ SS+ S + SRS TS + + E
Sbjct: 302 LTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSLGSGESPFSRSVTSNQSDGTQESCE 360
>gi|32130514 N-myc downstream-regulated gene 3 isoform b [Homo
sapiens]
Length = 363
Score = 469 bits (1208), Expect = e-132
Identities = 231/359 (64%), Positives = 283/359 (78%), Gaps = 17/359 (4%)
Query: 4 EMQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVILTYH 63
E+QDV L E+KPL+ +E DIET HG VHVT+ G PKGNRPVILTYH
Sbjct: 3 ELQDVQLTEIKPLLND-------------KEHDIETTHGVVHVTIRGLPKGNRPVILTYH 49
Query: 64 DIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAEMLP 123
DIG+NHK+C+N FN+EDMQEITQHFAVCHVDAPGQQ+GA SFP GY YP+MD+LAEMLP
Sbjct: 50 DIGLNHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPTGYQYPTMDELAEMLP 109
Query: 124 GVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKISGW 183
VL LKSIIG+G GAGAYIL+RFALN+PE+VEGLVLINV+PCA+GW+DWAASK+SG
Sbjct: 110 PVLTHLSLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGL 169
Query: 184 TQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIERPM 243
T + D++++H FG+EE+Q+N++++ TYR HI D+N NL LF+N+YN RRDLEIERP+
Sbjct: 170 TTNVVDIILAHHFGQEELQANLDLIQTYRMHIAQDINQDNLQLFLNSYNGRRDLEIERPI 229
Query: 244 PGTH---TVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAK 300
G + + TL+C LLVVGD+SPAV+AVVECNS+L+P TTLLKMADCGGLPQ+ QP K
Sbjct: 230 LGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPINTTLLKMADCGGLPQVVQPGK 289
Query: 301 LAEAFKYFVQGMGYMPSASMTRLMRSRT-ASGSSVTSLDGTRSRSHTSEGTRSRSHTSE 358
L EAFKYF+QGMGY+PSASMTRL RSRT ++ SS+ S + SRS TS + + E
Sbjct: 290 LTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSLGSGESPFSRSVTSNQSDGTQESCE 348
>gi|194440722 NDRG family member 4 isoform 2 [Homo sapiens]
Length = 391
Score = 445 bits (1145), Expect = e-125
Identities = 219/366 (59%), Positives = 276/366 (75%), Gaps = 13/366 (3%)
Query: 5 MQDVDLAEVKPLVEKGETITGL--------LQEFDVQEQDIETLHGSVHVTLCGTPKGNR 56
+Q++ E KPL+ +G+ T L + D +E DIET +G +HV + G+PKGNR
Sbjct: 24 LQELRFPEEKPLL-RGQDATELESSDAFLLAADTDWKEHDIETPYGLLHVVIRGSPKGNR 82
Query: 57 PVILTYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMD 116
P ILTYHD+G+NHK C+N FN+EDMQEIT+HF VCHVDAPGQQ GA+ FP GY +PSM+
Sbjct: 83 PAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSME 142
Query: 117 QLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWA 176
QLA MLP V+Q FG K +IG+G GAGAY+L +FAL P++VEGLVL+N++P +GW+DWA
Sbjct: 143 QLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKGWIDWA 202
Query: 177 ASKISGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRD 236
A+K+SG T LPD V+SHLF +EE+ +N E+V +YRQ I N +N NL LF N YNSRRD
Sbjct: 203 ATKLSGLTSTLPDTVLSHLFSQEELVNNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRD 262
Query: 237 LEIERPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQIS 296
L+I RP + TL+CP +LVVGD++PA D VVECNSKLDPT TT LKMAD GGLPQ++
Sbjct: 263 LDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVT 322
Query: 297 QPAKLAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTR----SRSHTSEGTRS 352
QP KL EAFKYF+QGMGYMPSASMTRL RSRTAS +S +S+DG+R + S +SEG
Sbjct: 323 QPGKLTEAFKYFLQGMGYMPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSEGLGQ 382
Query: 353 RSHTSE 358
+HT E
Sbjct: 383 VNHTME 388
>gi|13430864 NDRG family member 4 isoform 1 [Homo sapiens]
Length = 371
Score = 445 bits (1145), Expect = e-125
Identities = 219/366 (59%), Positives = 276/366 (75%), Gaps = 13/366 (3%)
Query: 5 MQDVDLAEVKPLVEKGETITGL--------LQEFDVQEQDIETLHGSVHVTLCGTPKGNR 56
+Q++ E KPL+ +G+ T L + D +E DIET +G +HV + G+PKGNR
Sbjct: 4 LQELRFPEEKPLL-RGQDATELESSDAFLLAADTDWKEHDIETPYGLLHVVIRGSPKGNR 62
Query: 57 PVILTYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMD 116
P ILTYHD+G+NHK C+N FN+EDMQEIT+HF VCHVDAPGQQ GA+ FP GY +PSM+
Sbjct: 63 PAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSME 122
Query: 117 QLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWA 176
QLA MLP V+Q FG K +IG+G GAGAY+L +FAL P++VEGLVL+N++P +GW+DWA
Sbjct: 123 QLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKGWIDWA 182
Query: 177 ASKISGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRD 236
A+K+SG T LPD V+SHLF +EE+ +N E+V +YRQ I N +N NL LF N YNSRRD
Sbjct: 183 ATKLSGLTSTLPDTVLSHLFSQEELVNNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRD 242
Query: 237 LEIERPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQIS 296
L+I RP + TL+CP +LVVGD++PA D VVECNSKLDPT TT LKMAD GGLPQ++
Sbjct: 243 LDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVT 302
Query: 297 QPAKLAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTR----SRSHTSEGTRS 352
QP KL EAFKYF+QGMGYMPSASMTRL RSRTAS +S +S+DG+R + S +SEG
Sbjct: 303 QPGKLTEAFKYFLQGMGYMPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSEGLGQ 362
Query: 353 RSHTSE 358
+HT E
Sbjct: 363 VNHTME 368
>gi|14165264 NDRG family member 4 isoform 1 [Homo sapiens]
Length = 371
Score = 445 bits (1145), Expect = e-125
Identities = 219/366 (59%), Positives = 276/366 (75%), Gaps = 13/366 (3%)
Query: 5 MQDVDLAEVKPLVEKGETITGL--------LQEFDVQEQDIETLHGSVHVTLCGTPKGNR 56
+Q++ E KPL+ +G+ T L + D +E DIET +G +HV + G+PKGNR
Sbjct: 4 LQELRFPEEKPLL-RGQDATELESSDAFLLAADTDWKEHDIETPYGLLHVVIRGSPKGNR 62
Query: 57 PVILTYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMD 116
P ILTYHD+G+NHK C+N FN+EDMQEIT+HF VCHVDAPGQQ GA+ FP GY +PSM+
Sbjct: 63 PAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSME 122
Query: 117 QLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWA 176
QLA MLP V+Q FG K +IG+G GAGAY+L +FAL P++VEGLVL+N++P +GW+DWA
Sbjct: 123 QLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKGWIDWA 182
Query: 177 ASKISGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRD 236
A+K+SG T LPD V+SHLF +EE+ +N E+V +YRQ I N +N NL LF N YNSRRD
Sbjct: 183 ATKLSGLTSTLPDTVLSHLFSQEELVNNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRD 242
Query: 237 LEIERPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQIS 296
L+I RP + TL+CP +LVVGD++PA D VVECNSKLDPT TT LKMAD GGLPQ++
Sbjct: 243 LDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVT 302
Query: 297 QPAKLAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTR----SRSHTSEGTRS 352
QP KL EAFKYF+QGMGYMPSASMTRL RSRTAS +S +S+DG+R + S +SEG
Sbjct: 303 QPGKLTEAFKYFLQGMGYMPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSEGLGQ 362
Query: 353 RSHTSE 358
+HT E
Sbjct: 363 VNHTME 368
>gi|42544224 N-myc downstream-regulated gene 2 isoform b [Homo
sapiens]
Length = 357
Score = 399 bits (1026), Expect = e-111
Identities = 200/365 (54%), Positives = 258/365 (70%), Gaps = 13/365 (3%)
Query: 4 EMQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVILTYH 63
E+Q+V + E KPL+ G+T + +ET +GSV T+ GTPK RP ILTYH
Sbjct: 3 ELQEVQITEEKPLLP-GQTPEA------AKTHSVETPYGSVTFTVYGTPKPKRPAILTYH 55
Query: 64 DIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAEMLP 123
D+G+N+K+C+ PLF +EDMQEI Q+F HVDAPG ++GA FP GY YPS+DQLA+M+P
Sbjct: 56 DVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIP 115
Query: 124 GVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKISGW 183
VLQ +IIG+G GAGAYIL R+ALN+P+ VEGLVLIN++P A+GWMDWAA K++G
Sbjct: 116 CVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGL 175
Query: 184 TQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIERPM 243
T ++P+M++ HLF +EE+ N E++ YR I + N N+ L+ N+YN+RRDL ER
Sbjct: 176 TSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFER-- 233
Query: 244 PGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAE 303
+TL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD GG PQ++QP KL E
Sbjct: 234 --GGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTE 291
Query: 304 AFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSR 363
AFKYF+QGMGYM S+ MTRL RSRTAS +S S+DG RSRS T + S G
Sbjct: 292 AFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSG--PP 349
Query: 364 SHTSE 368
HT E
Sbjct: 350 GHTME 354
>gi|42544222 N-myc downstream-regulated gene 2 isoform a [Homo
sapiens]
Length = 371
Score = 399 bits (1026), Expect = e-111
Identities = 201/373 (53%), Positives = 261/373 (69%), Gaps = 15/373 (4%)
Query: 4 EMQDVDLAEVKPLV--------EKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGN 55
E+Q+V + E KPL+ ++ E +L + Q +ET +GSV T+ GTPK
Sbjct: 3 ELQEVQITEEKPLLPGQTPEAAKEAELAARILLD-QGQTHSVETPYGSVTFTVYGTPKPK 61
Query: 56 RPVILTYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSM 115
RP ILTYHD+G+N+K+C+ PLF +EDMQEI Q+F HVDAPG ++GA FP GY YPS+
Sbjct: 62 RPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSL 121
Query: 116 DQLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDW 175
DQLA+M+P VLQ +IIG+G GAGAYIL R+ALN+P+ VEGLVLIN++P A+GWMDW
Sbjct: 122 DQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDW 181
Query: 176 AASKISGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRR 235
AA K++G T ++P+M++ HLF +EE+ N E++ YR I + N N+ L+ N+YN+RR
Sbjct: 182 AAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRR 241
Query: 236 DLEIERPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQI 295
DL ER +TL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD GG PQ+
Sbjct: 242 DLNFER----GGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQL 297
Query: 296 SQPAKLAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSH 355
+QP KL EAFKYF+QGMGYM S+ MTRL RSRTAS +S S+DG RSRS T +
Sbjct: 298 TQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGT 357
Query: 356 TSEGTRSRSHTSE 368
S G HT E
Sbjct: 358 LSSG--PPGHTME 368
>gi|42544220 N-myc downstream-regulated gene 2 isoform a [Homo
sapiens]
Length = 371
Score = 399 bits (1026), Expect = e-111
Identities = 201/373 (53%), Positives = 261/373 (69%), Gaps = 15/373 (4%)
Query: 4 EMQDVDLAEVKPLV--------EKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGN 55
E+Q+V + E KPL+ ++ E +L + Q +ET +GSV T+ GTPK
Sbjct: 3 ELQEVQITEEKPLLPGQTPEAAKEAELAARILLD-QGQTHSVETPYGSVTFTVYGTPKPK 61
Query: 56 RPVILTYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSM 115
RP ILTYHD+G+N+K+C+ PLF +EDMQEI Q+F HVDAPG ++GA FP GY YPS+
Sbjct: 62 RPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSL 121
Query: 116 DQLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDW 175
DQLA+M+P VLQ +IIG+G GAGAYIL R+ALN+P+ VEGLVLIN++P A+GWMDW
Sbjct: 122 DQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDW 181
Query: 176 AASKISGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRR 235
AA K++G T ++P+M++ HLF +EE+ N E++ YR I + N N+ L+ N+YN+RR
Sbjct: 182 AAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRR 241
Query: 236 DLEIERPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQI 295
DL ER +TL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD GG PQ+
Sbjct: 242 DLNFER----GGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQL 297
Query: 296 SQPAKLAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSH 355
+QP KL EAFKYF+QGMGYM S+ MTRL RSRTAS +S S+DG RSRS T +
Sbjct: 298 TQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGT 357
Query: 356 TSEGTRSRSHTSE 368
S G HT E
Sbjct: 358 LSSG--PPGHTME 368
>gi|42544218 N-myc downstream-regulated gene 2 isoform b [Homo
sapiens]
Length = 357
Score = 399 bits (1026), Expect = e-111
Identities = 200/365 (54%), Positives = 258/365 (70%), Gaps = 13/365 (3%)
Query: 4 EMQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVILTYH 63
E+Q+V + E KPL+ G+T + +ET +GSV T+ GTPK RP ILTYH
Sbjct: 3 ELQEVQITEEKPLLP-GQTPEA------AKTHSVETPYGSVTFTVYGTPKPKRPAILTYH 55
Query: 64 DIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAEMLP 123
D+G+N+K+C+ PLF +EDMQEI Q+F HVDAPG ++GA FP GY YPS+DQLA+M+P
Sbjct: 56 DVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIP 115
Query: 124 GVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKISGW 183
VLQ +IIG+G GAGAYIL R+ALN+P+ VEGLVLIN++P A+GWMDWAA K++G
Sbjct: 116 CVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGL 175
Query: 184 TQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIERPM 243
T ++P+M++ HLF +EE+ N E++ YR I + N N+ L+ N+YN+RRDL ER
Sbjct: 176 TSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFER-- 233
Query: 244 PGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAE 303
+TL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD GG PQ++QP KL E
Sbjct: 234 --GGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTE 291
Query: 304 AFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSR 363
AFKYF+QGMGYM S+ MTRL RSRTAS +S S+DG RSRS T + S G
Sbjct: 292 AFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSG--PP 349
Query: 364 SHTSE 368
HT E
Sbjct: 350 GHTME 354
>gi|42544216 N-myc downstream-regulated gene 2 isoform a [Homo
sapiens]
Length = 371
Score = 399 bits (1026), Expect = e-111
Identities = 201/373 (53%), Positives = 261/373 (69%), Gaps = 15/373 (4%)
Query: 4 EMQDVDLAEVKPLV--------EKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGN 55
E+Q+V + E KPL+ ++ E +L + Q +ET +GSV T+ GTPK
Sbjct: 3 ELQEVQITEEKPLLPGQTPEAAKEAELAARILLD-QGQTHSVETPYGSVTFTVYGTPKPK 61
Query: 56 RPVILTYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSM 115
RP ILTYHD+G+N+K+C+ PLF +EDMQEI Q+F HVDAPG ++GA FP GY YPS+
Sbjct: 62 RPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSL 121
Query: 116 DQLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDW 175
DQLA+M+P VLQ +IIG+G GAGAYIL R+ALN+P+ VEGLVLIN++P A+GWMDW
Sbjct: 122 DQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDW 181
Query: 176 AASKISGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRR 235
AA K++G T ++P+M++ HLF +EE+ N E++ YR I + N N+ L+ N+YN+RR
Sbjct: 182 AAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRR 241
Query: 236 DLEIERPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQI 295
DL ER +TL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD GG PQ+
Sbjct: 242 DLNFER----GGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQL 297
Query: 296 SQPAKLAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSH 355
+QP KL EAFKYF+QGMGYM S+ MTRL RSRTAS +S S+DG RSRS T +
Sbjct: 298 TQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGT 357
Query: 356 TSEGTRSRSHTSE 368
S G HT E
Sbjct: 358 LSSG--PPGHTME 368
>gi|10280620 N-myc downstream-regulated gene 2 isoform b [Homo
sapiens]
Length = 357
Score = 399 bits (1026), Expect = e-111
Identities = 200/365 (54%), Positives = 258/365 (70%), Gaps = 13/365 (3%)
Query: 4 EMQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVILTYH 63
E+Q+V + E KPL+ G+T + +ET +GSV T+ GTPK RP ILTYH
Sbjct: 3 ELQEVQITEEKPLLP-GQTPEA------AKTHSVETPYGSVTFTVYGTPKPKRPAILTYH 55
Query: 64 DIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAEMLP 123
D+G+N+K+C+ PLF +EDMQEI Q+F HVDAPG ++GA FP GY YPS+DQLA+M+P
Sbjct: 56 DVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIP 115
Query: 124 GVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKISGW 183
VLQ +IIG+G GAGAYIL R+ALN+P+ VEGLVLIN++P A+GWMDWAA K++G
Sbjct: 116 CVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGL 175
Query: 184 TQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIERPM 243
T ++P+M++ HLF +EE+ N E++ YR I + N N+ L+ N+YN+RRDL ER
Sbjct: 176 TSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFER-- 233
Query: 244 PGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAE 303
+TL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD GG PQ++QP KL E
Sbjct: 234 --GGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTE 291
Query: 304 AFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSR 363
AFKYF+QGMGYM S+ MTRL RSRTAS +S S+DG RSRS T + S G
Sbjct: 292 AFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSG--PP 349
Query: 364 SHTSE 368
HT E
Sbjct: 350 GHTME 354
>gi|42544213 N-myc downstream-regulated gene 2 isoform b [Homo
sapiens]
Length = 357
Score = 399 bits (1026), Expect = e-111
Identities = 200/365 (54%), Positives = 258/365 (70%), Gaps = 13/365 (3%)
Query: 4 EMQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVILTYH 63
E+Q+V + E KPL+ G+T + +ET +GSV T+ GTPK RP ILTYH
Sbjct: 3 ELQEVQITEEKPLLP-GQTPEA------AKTHSVETPYGSVTFTVYGTPKPKRPAILTYH 55
Query: 64 DIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAEMLP 123
D+G+N+K+C+ PLF +EDMQEI Q+F HVDAPG ++GA FP GY YPS+DQLA+M+P
Sbjct: 56 DVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIP 115
Query: 124 GVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKISGW 183
VLQ +IIG+G GAGAYIL R+ALN+P+ VEGLVLIN++P A+GWMDWAA K++G
Sbjct: 116 CVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGL 175
Query: 184 TQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIERPM 243
T ++P+M++ HLF +EE+ N E++ YR I + N N+ L+ N+YN+RRDL ER
Sbjct: 176 TSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFER-- 233
Query: 244 PGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAE 303
+TL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD GG PQ++QP KL E
Sbjct: 234 --GGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTE 291
Query: 304 AFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSR 363
AFKYF+QGMGYM S+ MTRL RSRTAS +S S+DG RSRS T + S G
Sbjct: 292 AFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSG--PP 349
Query: 364 SHTSE 368
HT E
Sbjct: 350 GHTME 354
>gi|42544211 N-myc downstream-regulated gene 2 isoform a [Homo
sapiens]
Length = 371
Score = 399 bits (1026), Expect = e-111
Identities = 201/373 (53%), Positives = 261/373 (69%), Gaps = 15/373 (4%)
Query: 4 EMQDVDLAEVKPLV--------EKGETITGLLQEFDVQEQDIETLHGSVHVTLCGTPKGN 55
E+Q+V + E KPL+ ++ E +L + Q +ET +GSV T+ GTPK
Sbjct: 3 ELQEVQITEEKPLLPGQTPEAAKEAELAARILLD-QGQTHSVETPYGSVTFTVYGTPKPK 61
Query: 56 RPVILTYHDIGMNHKTCYNPLFNYEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSM 115
RP ILTYHD+G+N+K+C+ PLF +EDMQEI Q+F HVDAPG ++GA FP GY YPS+
Sbjct: 62 RPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSL 121
Query: 116 DQLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDW 175
DQLA+M+P VLQ +IIG+G GAGAYIL R+ALN+P+ VEGLVLIN++P A+GWMDW
Sbjct: 122 DQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDW 181
Query: 176 AASKISGWTQALPDMVVSHLFGKEEMQSNVEVVHTYRQHIVNDMNPGNLHLFINAYNSRR 235
AA K++G T ++P+M++ HLF +EE+ N E++ YR I + N N+ L+ N+YN+RR
Sbjct: 182 AAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRR 241
Query: 236 DLEIERPMPGTHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQI 295
DL ER +TL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD GG PQ+
Sbjct: 242 DLNFER----GGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQL 297
Query: 296 SQPAKLAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSH 355
+QP KL EAFKYF+QGMGYM S+ MTRL RSRTAS +S S+DG RSRS T +
Sbjct: 298 TQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGT 357
Query: 356 TSEGTRSRSHTSE 368
S G HT E
Sbjct: 358 LSSG--PPGHTME 368
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 35.0 bits (79), Expect = 0.12
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 325 RSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAHLDITPNSGAAGNS 384
+SR+ SGSS +S +RSRS + +RS+S + +RSRS E + S + +S
Sbjct: 203 KSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRS-KKEKSRSPSKEKSRSRSHS 261
Query: 385 AG 386
AG
Sbjct: 262 AG 263
Score = 29.6 bits (65), Expect = 4.9
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 340 TRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAH 371
+RSRSH+ +RSRS S +RSRS +S+ +H
Sbjct: 186 SRSRSHSR--SRSRSRHSRKSRSRSGSSKSSH 215
Score = 29.6 bits (65), Expect = 4.9
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 325 RSRTASGSSVTSLDGTRS-----------RSHTSEGTRSRSHTSEGTRSRSHTSEGAHLD 373
RSR+ SGS S +RS RS + E +RSRSH++ +RS+S +
Sbjct: 219 RSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQ 278
Query: 374 ITPNSG 379
N G
Sbjct: 279 NNDNVG 284
Score = 29.3 bits (64), Expect = 6.5
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 310 QGMGYMPSASMTRLMRSRTASGS-SVTSLDG-TRSRSHTSEGTRSRSHTSEGTRSRS 364
+G G +A + RSR+ S S S +L +RSRS ++ TRSRS + + SRS
Sbjct: 426 EGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRS 482
Score = 28.9 bits (63), Expect = 8.4
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 323 LMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHT---SEGAHLDITPNSG 379
L +SR+ S S S +RSRS + + + R + E +RSRS + SE + +
Sbjct: 327 LRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDS 386
Query: 380 AAGNSAGPK 388
AG+S K
Sbjct: 387 KAGSSKKKK 395
>gi|23200008 abhydrolase domain containing 11 isoform 1 [Homo
sapiens]
Length = 315
Score = 35.0 bits (79), Expect = 0.12
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 91 VCHVDAPGQQDGAASFPAGYMYPSMDQLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFA 150
V VDA D S Y S D L ++LP Q GL + +G G A
Sbjct: 97 VLTVDARNHGDSPHSPDMSYEIMSQD-LQDLLP----QLGLVPCVVVGHSMGGKTAMLLA 151
Query: 151 LNNPEMVEGLVLINVNP 167
L PE+VE L+ ++++P
Sbjct: 152 LQRPELVERLIAVDISP 168
>gi|23200012 abhydrolase domain containing 11 isoform 2 [Homo
sapiens]
Length = 308
Score = 35.0 bits (79), Expect = 0.12
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 91 VCHVDAPGQQDGAASFPAGYMYPSMDQLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFA 150
V VDA D S Y S D L ++LP Q GL + +G G A
Sbjct: 90 VLTVDARNHGDSPHSPDMSYEIMSQD-LQDLLP----QLGLVPCVVVGHSMGGKTAMLLA 144
Query: 151 LNNPEMVEGLVLINVNP 167
L PE+VE L+ ++++P
Sbjct: 145 LQRPELVERLIAVDISP 161
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 34.7 bits (78), Expect = 0.15
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 317 SASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSE 368
S S + RS + S S +S +RSRS +S ++SRS +S RSRS S+
Sbjct: 204 SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSK 255
Score = 34.7 bits (78), Expect = 0.15
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 326 SRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGA 370
SR++S SS S +RSRS +S +RSRS + E +RSR S +
Sbjct: 215 SRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSS 259
Score = 30.4 bits (67), Expect = 2.9
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 316 PSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSH 365
PS+S +R RSR+ S SS S RSRS + E +RSR S + SRSH
Sbjct: 220 PSSSRSR-SRSRSRSSSSSQS----RSRSSSRERSRSRGSKSRSS-SRSH 263
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 34.7 bits (78), Expect = 0.15
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 317 SASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSE 368
S S + RS + S S +S +RSRS +S ++SRS +S RSRS S+
Sbjct: 204 SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSK 255
Score = 34.7 bits (78), Expect = 0.15
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 326 SRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGA 370
SR++S SS S +RSRS +S +RSRS + E +RSR S +
Sbjct: 215 SRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSS 259
Score = 30.4 bits (67), Expect = 2.9
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 316 PSASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSH 365
PS+S +R RSR+ S SS S RSRS + E +RSR S + SRSH
Sbjct: 220 PSSSRSR-SRSRSRSSSSSQS----RSRSSSRERSRSRGSKSRSS-SRSH 263
>gi|148233596 LPS-responsive vesicle trafficking, beach and anchor
containing [Homo sapiens]
Length = 2863
Score = 34.3 bits (77), Expect = 0.20
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 340 TRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAHLDITPNSGAAGNSAGPKSM 390
T + SE T S G + T G+H+++TP++ G SAGP ++
Sbjct: 1587 TTASVEESESTSSARRRDSGIGEETATGLGSHVEVTPHTAPPGVSAGPDAI 1637
>gi|239742514 PREDICTED: similar to Putative POM121-like protein
1-like [Homo sapiens]
Length = 896
Score = 33.9 bits (76), Expect = 0.26
Identities = 40/142 (28%), Positives = 53/142 (37%), Gaps = 15/142 (10%)
Query: 260 GDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMPSAS 319
G S+PA A S L+PT +LL D G ++ A A + V+ S
Sbjct: 597 GTSAPAAAAAAPPPSTLNPTSGSLLNAVDEGPSHFLASATAAARARRSQVR-YNQRSQTS 655
Query: 320 MTRLMRSRTASGSSVTSLDGTR--------SRSHTSEGTRSRSHTSE----GTRSRSHTS 367
TR R AS SS +S +G + + SH S + SE SR
Sbjct: 656 RTRSCLKRNASSSSHSSTEGLQELKRRRGPASSHCQLALSSSNTVSEDGPQAVSSRDTRC 715
Query: 368 EGAHLDITPNSGAAGNSAGPKS 389
E A D P A P+S
Sbjct: 716 EKA--DTAPGQTLAPRGGSPRS 735
Score = 33.1 bits (74), Expect = 0.45
Identities = 38/139 (27%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 262 SSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMPSASMT 321
S+PA A S L+PT +LL D G ++ A A + V+ S T
Sbjct: 326 SAPAAAAAAPPPSTLNPTSGSLLNAVDGGPSHFLASATAAARAQRSEVR-YNQRSQISRT 384
Query: 322 RLMRSRTASGSSVTSLDG----TRSRSHTSE-----GTRSRSHTSEGTR--SRSHTSEGA 370
R R AS SS +S +G R R S + S++ + +G + S HT
Sbjct: 385 RSCLKRNASSSSHSSTEGLPELKRRRGPASSHCQLAHSSSKTVSEDGPQAVSSGHTRCEK 444
Query: 371 HLDITPNSGAAGNSAGPKS 389
D P A P+S
Sbjct: 445 RADTAPGQTLAPRGGSPRS 463
>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
sapiens]
Length = 955
Score = 33.5 bits (75), Expect = 0.34
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 317 SASMTRLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRS----HTSEGAHL 372
S S +R RSR+AS S S +RSRS + +R R S +RSRS H E H
Sbjct: 7 SKSGSRSSRSRSASRSRSRSFSKSRSRSRSLSRSRKR-RLSSRSRSRSYSPAHNRERNHP 65
Query: 373 DITPNSGAAGNSAG 386
+ N G++ G
Sbjct: 66 RVYQNRDFRGHNRG 79
>gi|239742580 PREDICTED: similar to Putative POM121-like protein
1-like [Homo sapiens]
Length = 897
Score = 33.1 bits (74), Expect = 0.45
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 232 NSRRDLEIERPMPGTHTVTLQCPALLVV--GDSSPAVDAVVECNSKLDPTKTTLLKMADC 289
+SR ++ +P T T + + G S+PA A S L+PT +LL D
Sbjct: 568 HSRDSAQVTSLIPATFTAASRDAGMRRTRPGTSAPAAAAAALPPSTLNPTSGSLLNAVDG 627
Query: 290 GGLPQISQPAKLAEAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLDG---TRSRSHT 346
G ++ A A + V+ S TR R AS SS +S +G + R
Sbjct: 628 GPSHFLASATAAARAQRSEVR-YNQRSQTSRTRSCLKRNASSSSHSSTEGLQELKRRRGP 686
Query: 347 SEGTRSRSHTSEGTRS 362
+ +H+S T S
Sbjct: 687 ASSHCQLAHSSSNTVS 702
>gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo
sapiens]
Length = 1521
Score = 32.0 bits (71), Expect = 1.00
Identities = 15/68 (22%), Positives = 37/68 (54%)
Query: 326 SRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAHLDITPNSGAAGNSA 385
S T S +++TS +G+ + + G+ + + ++EG+ + + ++EG+ +G+ +A
Sbjct: 706 STTGSETTITSTEGSEITTASITGSETTTASTEGSETTTASTEGSETTSASTTGSETTTA 765
Query: 386 GPKSMEVS 393
S E +
Sbjct: 766 STTSSETT 773
Score = 30.4 bits (67), Expect = 2.9
Identities = 13/68 (19%), Positives = 37/68 (54%)
Query: 326 SRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAHLDITPNSGAAGNSA 385
S T + +++TS +G+ + + T+ G+ + + + G+ + + ++EG+ +G+ +A
Sbjct: 1017 STTGTETTITSTEGSETTTVTTAGSETTAVYTTGSETTTTSTEGSETTTVSTTGSETTTA 1076
Query: 386 GPKSMEVS 393
+E +
Sbjct: 1077 STADLETT 1084
Score = 29.3 bits (64), Expect = 6.5
Identities = 12/68 (17%), Positives = 38/68 (55%)
Query: 326 SRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAHLDITPNSGAAGNSA 385
S +S ++ + G+ + + ++EG+ + + ++EG+ + + ++EG+ + +G+ +A
Sbjct: 867 STESSETTTATTIGSETTTASTEGSETTTTSTEGSETTTASTEGSEITTVSTTGSETTTA 926
Query: 386 GPKSMEVS 393
+ E +
Sbjct: 927 STEGSETT 934
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 32.0 bits (71), Expect = 1.00
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 17/107 (15%)
Query: 278 PTKTTLLKMADCGGLPQI---------SQPAKLAEAFKYFVQGMGYMPSASMTRL----M 324
PT+ ++ AD +P+ +P K+ + V+ P A+ L
Sbjct: 221 PTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMK 280
Query: 325 RSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAH 371
R R A +++ +S+ +G RSRSH TRS+S +S +H
Sbjct: 281 RVREAQSFISAAIEPESGKSNERKGGRSRSH----TRSKSRSSSKSH 323
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 32.0 bits (71), Expect = 1.00
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 17/107 (15%)
Query: 278 PTKTTLLKMADCGGLPQI---------SQPAKLAEAFKYFVQGMGYMPSASMTRL----M 324
PT+ ++ AD +P+ +P K+ + V+ P A+ L
Sbjct: 105 PTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMK 164
Query: 325 RSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAH 371
R R A +++ +S+ +G RSRSH TRS+S +S +H
Sbjct: 165 RVREAQSFISAAIEPESGKSNERKGGRSRSH----TRSKSRSSSKSH 207
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 31.2 bits (69), Expect = 1.7
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 322 RLMRSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHT 366
R R+ SGS S RSRS + +RSRS + +RSRS +
Sbjct: 184 RTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRS 228
Score = 31.2 bits (69), Expect = 1.7
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 336 SLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAHLDITPNSGAAGNSAGPKSMEVS 393
S G+RSRS + +RSRS S +RSRS + + + S G KS S
Sbjct: 190 SYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKS 247
Score = 29.6 bits (65), Expect = 4.9
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 325 RSRTASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAHLDITPNSGAAGNS 384
RS + S S S +RSRS S +RSRS + +RSRS + + + +
Sbjct: 189 RSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSK 248
Query: 385 AGPKS 389
+ PKS
Sbjct: 249 SKPKS 253
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 31.2 bits (69), Expect = 1.7
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 329 ASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAHLDITPNS 378
A+GS+ T+ T + S TS+ S S T SHTS H ++TP S
Sbjct: 1492 ATGSTHTAPPITPTTSGTSQAHSSFSTNKTPTSLHSHTSSTHHPEVTPTS 1541
Score = 29.6 bits (65), Expect = 4.9
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 329 ASGSSVTSLDGTRSRSHTSEGTRSRSHTSEGTRSRSHTSEGAHLDITPNS 378
A+GS+ T+ T + S TS+ S S T HTS H ++TP S
Sbjct: 1885 ATGSTHTAPPMTPTTSGTSQSPSSFSTAKTSTSLPYHTSSTHHPEVTPTS 1934
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 30.8 bits (68), Expect = 2.2
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 5 MQDVDLAEVKPLVEKGETI--TGLLQEF-DVQEQDIETLHGSVHVTLC 49
++++D EV + T G +QE ++ EQ +ETLH ++H TLC
Sbjct: 1572 VRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAMHETLC 1619
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,613,978
Number of Sequences: 37866
Number of extensions: 713607
Number of successful extensions: 2858
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2259
Number of HSP's gapped (non-prelim): 540
length of query: 394
length of database: 18,247,518
effective HSP length: 104
effective length of query: 290
effective length of database: 14,309,454
effective search space: 4149741660
effective search space used: 4149741660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.