Guide to the Human Genome
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Search of human proteins with 20070328

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|20070328 membrane-spanning 4-domains, subfamily A, member 4
isoform a [Homo sapiens]
         (220 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20070328 membrane-spanning 4-domains, subfamily A, member 4 i...   444   e-125
gi|23110995 membrane-spanning 4-domains, subfamily A, member 4 i...   444   e-125
gi|239755562 PREDICTED: membrane-spanning 4-domains, subfamily A...   330   8e-91
gi|239750062 PREDICTED: membrane-spanning 4-domains, subfamily A...   330   8e-91
gi|239744375 PREDICTED: membrane-spanning 4-domains, subfamily A...   328   2e-90
gi|13899295 membrane-spanning 4-domains, subfamily A, member 8B ...    97   1e-20
gi|73486649 membrane-spanning 4-domains, subfamily A, member 3 i...    91   1e-18
gi|8923206 membrane-spanning 4-domains, subfamily A, member 12 [...    89   4e-18
gi|149588599 membrane-spanning 4-domains, subfamily A, member 15...    82   4e-16
gi|23110997 membrane-spanning 4-domains, subfamily A, member 5 [...    82   5e-16
gi|23110987 membrane-spanning 4-domains, subfamily A, member 1 [...    78   7e-15
gi|23110989 membrane-spanning 4-domains, subfamily A, member 1 [...    78   7e-15
gi|4503677 membrane-spanning 4-domains, subfamily A, member 2 is...    72   3e-13
gi|23238238 membrane-spanning 4-domains, subfamily A, member 6A ...    72   5e-13
gi|119226217 membrane-spanning 4-domains, subfamily A, member 14...    71   6e-13
gi|214831008 membrane-spanning 4-domains, subfamily A, member 2 ...    69   3e-12
gi|169202868 PREDICTED: similar to membrane-spanning 4-domains, ...    68   7e-12
gi|169203526 PREDICTED: similar to membrane-spanning 4-domains, ...    68   7e-12
gi|169202217 PREDICTED: similar to membrane-spanning 4-domains, ...    68   7e-12
gi|23238234 membrane-spanning 4-domains, subfamily A, member 6A ...    67   2e-11
gi|11139299 membrane-spanning 4-domains, subfamily A, member 7 i...    64   1e-10
gi|46249357 membrane-spanning 4-domains, subfamily A, member 7 i...    64   1e-10
gi|73486653 membrane-spanning 4-domains, subfamily A, member 3 i...    62   5e-10
gi|22749421 membrane-spanning 4-domains, subfamily A, member 15 ...    58   7e-09
gi|23238236 membrane-spanning 4-domains, subfamily A, member 6A ...    57   1e-08
gi|119226220 membrane-spanning 4-domains, subfamily A, member 14...    54   1e-07
gi|46249347 membrane-spanning 4-domains, subfamily A, member 7 i...    43   2e-04
gi|46249359 membrane-spanning 4-domains, subfamily A, member 7 i...    43   2e-04
gi|73486651 membrane-spanning 4-domains, subfamily A, member 3 i...    40   0.002
gi|167466260 membrane-spanning 4-domains, subfamily A, member 10...    36   0.029

>gi|20070328 membrane-spanning 4-domains, subfamily A, member 4
           isoform a [Homo sapiens]
          Length = 220

 Score =  444 bits (1143), Expect = e-125
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSLS 60
           MTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSLS
Sbjct: 1   MTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSLS 60

Query: 61  MGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNIT 120
           MGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNIT
Sbjct: 61  MGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNIT 120

Query: 121 SSVLAASGILINTFSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIA 180
           SSVLAASGILINTFSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIA
Sbjct: 121 SSVLAASGILINTFSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIA 180

Query: 181 VSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTPLNEV 220
           VSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTPLNEV
Sbjct: 181 VSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTPLNEV 220


>gi|23110995 membrane-spanning 4-domains, subfamily A, member 4
           isoform b [Homo sapiens]
          Length = 239

 Score =  444 bits (1143), Expect = e-125
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSLS 60
           MTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSLS
Sbjct: 20  MTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSLS 79

Query: 61  MGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNIT 120
           MGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNIT
Sbjct: 80  MGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNIT 139

Query: 121 SSVLAASGILINTFSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIA 180
           SSVLAASGILINTFSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIA
Sbjct: 140 SSVLAASGILINTFSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIA 199

Query: 181 VSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTPLNEV 220
           VSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTPLNEV
Sbjct: 200 VSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTPLNEV 239


>gi|239755562 PREDICTED: membrane-spanning 4-domains, subfamily A,
           member 4E isoform 1 [Homo sapiens]
          Length = 243

 Score =  330 bits (845), Expect = 8e-91
 Identities = 170/220 (77%), Positives = 186/220 (84%)

Query: 1   MTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSLS 60
           MTTMQGMEQ  PGAGP VPQLGN+ VIHS+L KGLQEKF K +PKVLGVV+IL ALMSLS
Sbjct: 24  MTTMQGMEQTTPGAGPDVPQLGNIDVIHSYLCKGLQEKFFKRKPKVLGVVRILIALMSLS 83

Query: 61  MGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNIT 120
           MGI MMC+A ++Y  +PI VY+ YTIWGSVMFIIS SLS+AAGIRTTKGLV GSLG NIT
Sbjct: 84  MGIIMMCVAFSSYEEHPIFVYVAYTIWGSVMFIISVSLSVAAGIRTTKGLVGGSLGKNIT 143

Query: 121 SSVLAASGILINTFSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIA 180
           SSVLA SGILIN  SL FYSF + YCN+   S+NC+ TMSILMG DGMVLLLSVLEFCIA
Sbjct: 144 SSVLAISGILINAISLTFYSFRYHYCNHDQLSSNCYMTMSILMGTDGMVLLLSVLEFCIA 203

Query: 181 VSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTPLNEV 220
           VSLSAFGCKVLCC+P  VVLI PS+SHMAE ASPTPL  V
Sbjct: 204 VSLSAFGCKVLCCSPSEVVLITPSNSHMAEIASPTPLKTV 243


>gi|239750062 PREDICTED: membrane-spanning 4-domains, subfamily A,
           member 4E isoform 3 [Homo sapiens]
          Length = 243

 Score =  330 bits (845), Expect = 8e-91
 Identities = 170/220 (77%), Positives = 186/220 (84%)

Query: 1   MTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSLS 60
           MTTMQGMEQ  PGAGP VPQLGN+ VIHS+L KGLQEKF K +PKVLGVV+IL ALMSLS
Sbjct: 24  MTTMQGMEQTTPGAGPDVPQLGNIDVIHSYLCKGLQEKFFKRKPKVLGVVRILIALMSLS 83

Query: 61  MGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNIT 120
           MGI MMC+A ++Y  +PI VY+ YTIWGSVMFIIS SLS+AAGIRTTKGLV GSLG NIT
Sbjct: 84  MGIIMMCVAFSSYEEHPIFVYVAYTIWGSVMFIISVSLSVAAGIRTTKGLVGGSLGKNIT 143

Query: 121 SSVLAASGILINTFSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIA 180
           SSVLA SGILIN  SL FYSF + YCN+   S+NC+ TMSILMG DGMVLLLSVLEFCIA
Sbjct: 144 SSVLAISGILINAISLTFYSFRYHYCNHDQLSSNCYMTMSILMGTDGMVLLLSVLEFCIA 203

Query: 181 VSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTPLNEV 220
           VSLSAFGCKVLCC+P  VVLI PS+SHMAE ASPTPL  V
Sbjct: 204 VSLSAFGCKVLCCSPSEVVLITPSNSHMAEIASPTPLKTV 243


>gi|239744375 PREDICTED: membrane-spanning 4-domains, subfamily A,
           member 4E isoform 3 [Homo sapiens]
          Length = 243

 Score =  328 bits (842), Expect = 2e-90
 Identities = 169/220 (76%), Positives = 186/220 (84%)

Query: 1   MTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSLS 60
           MTTMQGMEQ  PGAGP VPQLGN+ VIHS+L KGLQEKF K +PKVLGVV+IL ALMSLS
Sbjct: 24  MTTMQGMEQTTPGAGPDVPQLGNIDVIHSYLCKGLQEKFFKRKPKVLGVVRILIALMSLS 83

Query: 61  MGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNIT 120
           MGI MMC+A ++Y  +PI VY+ YTIWGSVMFIIS SLS+AAGIRTTKGLV GSLG NIT
Sbjct: 84  MGIIMMCVAFSSYEEHPIFVYVAYTIWGSVMFIISVSLSVAAGIRTTKGLVGGSLGKNIT 143

Query: 121 SSVLAASGILINTFSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIA 180
           SSVLA SGILIN  SL FYSF + YCN+   S+NC+ TMSILMG DGMVLLLSVLEFCIA
Sbjct: 144 SSVLAISGILINAISLTFYSFRYHYCNHDQLSSNCYMTMSILMGTDGMVLLLSVLEFCIA 203

Query: 181 VSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTPLNEV 220
           V+LSAFGCKVLCC+P  VVLI PS+SHMAE ASPTPL  V
Sbjct: 204 VALSAFGCKVLCCSPSEVVLITPSNSHMAEIASPTPLKTV 243


>gi|13899295 membrane-spanning 4-domains, subfamily A, member 8B
           [Homo sapiens]
          Length = 250

 Score = 97.1 bits (240), Expect = 1e-20
 Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 13/184 (7%)

Query: 37  EKFLKGEPKVLGVVQILTALMSLSMGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISG 96
           +K LK E K LG +QI+  L  + +G  M  +    Y S  IS Y G+  WG + FIISG
Sbjct: 63  QKALK-EGKTLGAIQIIIGLAHIGLGSIMATVLVGEYLS--ISFYGGFPFWGGLWFIISG 119

Query: 97  SLSIAAGIRT-TKGLVRGSLGMNITSSVLAASGILINTFSLAFYSFHHPYC--NYYGNSN 153
           SLS+AA  +  +  L+ GSLG+NI S++ +A G+++    L   S  HPY   +YY  + 
Sbjct: 120 SLSVAAENQPYSYCLLSGSLGLNIVSAICSAVGVILFITDL---SIPHPYAYPDYYPYAW 176

Query: 154 NCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCCTPGGVVLILPSHSHMAETAS 213
             +  M+I     G++L+  +LEF IA + S FGC+++CC    V +I P+        +
Sbjct: 177 GVNPGMAI----SGVLLVFCLLEFGIACASSHFGCQLVCCQSSNVSVIYPNIYAANPVIT 232

Query: 214 PTPL 217
           P P+
Sbjct: 233 PEPV 236


>gi|73486649 membrane-spanning 4-domains, subfamily A, member 3
           isoform a [Homo sapiens]
          Length = 214

 Score = 90.5 bits (223), Expect = 1e-18
 Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 4/159 (2%)

Query: 39  FLKGEPKVLGVVQILTALMSLSMGITMMCMASNTYGSNPI---SVYIGYTIWGSVMFIIS 95
           + K + +VLG +QIL A M L++G+ +  +    +        + Y GY IWG+V F  S
Sbjct: 43  YQKAKLQVLGAIQILNAAMILALGVFLGSLQYPYHFQKHFFFFTFYTGYPIWGAVFFCSS 102

Query: 96  GSLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILINTFSLAFYSFHHPYCNYYGNSNN- 154
           G+LS+ AGI+ T+  ++ S GMNI S+ +A  G    + ++A        C+    S + 
Sbjct: 103 GTLSVVAGIKPTRTWIQNSFGMNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDL 162

Query: 155 CHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCC 193
           C+   SI  G+  ++L+L++LE C+ +S  A  C   CC
Sbjct: 163 CNYMGSISNGMVSLLLILTLLELCVTISTIAMWCNANCC 201


>gi|8923206 membrane-spanning 4-domains, subfamily A, member 12
           [Homo sapiens]
          Length = 267

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 28/223 (12%)

Query: 5   QGMEQAMPGA--GPGV-----PQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALM 57
           QG ++A P     PG+     P  GN+ +I+  +   +     K E K LGV+QI+  LM
Sbjct: 44  QGAQRAQPYGITSPGIFASSQPGQGNIQMINPSVGTAVMN--FKEEAKALGVIQIMVGLM 101

Query: 58  SLSMGITMMCMASNTY----GSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRG 113
            +  GI ++C+ S ++    G    +V  GY  WG + FIISGSLS++A    ++ LV+G
Sbjct: 102 HIGFGI-VLCLISFSFREVLGFASTAVIGGYPFWGGLSFIISGSLSVSASKELSRCLVKG 160

Query: 114 SLGMNITSSVLAASGILINTFSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLS 173
           SLGMNI SS+LA  G+++    +             G +   +  +    G+   +++ S
Sbjct: 161 SLGMNIVSSILAFIGVILLLVDMCI----------NGVAGQDYWAVLSGKGISATLMIFS 210

Query: 174 VLEFCIAVSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTP 216
           +LEF +A + + F  +    T   V++I     +M E+   TP
Sbjct: 211 LLEFFVACATAHFANQANTTTNMSVLVI----PNMYESNPVTP 249


>gi|149588599 membrane-spanning 4-domains, subfamily A, member 15
           isoform 1 [Homo sapiens]
          Length = 240

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 64/182 (35%), Positives = 87/182 (47%), Gaps = 25/182 (13%)

Query: 37  EKFLKGEPKVLGVVQILTALMSLSMGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISG 96
           E FL GEPKVLG VQIL  L+ L  G  ++ +     G     +  G   WG   FIISG
Sbjct: 64  ETFLTGEPKVLGTVQILIGLIHLGFGSVLLMVRRGHVGI--FFIEGGVPFWGGACFIISG 121

Query: 97  SLSIAAGIRTTKGLVRGSLGMNITSSVLAASG--ILINTFSLAFYSFHHPYCNYYGNSNN 154
           SLS+AA    T  LVR SLG NI S + A +G  IL+  F +              N + 
Sbjct: 122 SLSVAAEKNHTSCLVRSSLGTNILSVMAAFAGTAILLMDFGVT-------------NRDV 168

Query: 155 CHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCCTPGGVVLILPSHSHMAETASP 214
             G +++L        + +VLEF  AV    FGC+ +       V+ LP ++  A+   P
Sbjct: 169 DRGYLAVL-------TIFTVLEFFTAVIAMHFGCQAIHAQASAPVIFLP-NAFSADFNIP 220

Query: 215 TP 216
           +P
Sbjct: 221 SP 222


>gi|23110997 membrane-spanning 4-domains, subfamily A, member 5
           [Homo sapiens]
          Length = 200

 Score = 81.6 bits (200), Expect = 5e-16
 Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 2/152 (1%)

Query: 37  EKFLKGEPKVLGVVQILTALMSLSMGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISG 96
           +K    + K+LG +QIL  +M+ S G+  +      Y   P     GY  WGSV+FI SG
Sbjct: 40  QKLFARKMKILGTIQILFGIMTFSFGVIFLFTLLKPYPRFPFIFLSGYPFWGSVLFINSG 99

Query: 97  SLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILINTFSLAFYSFHHPYCNYYGNSNNCH 156
           +  IA   +TT+ L+  S  MN  S++ A +GI++ TF   F    +  C Y   ++ C 
Sbjct: 100 AFLIAVKRKTTETLIILSRIMNFLSALGAIAGIILLTF--GFILDQNYICGYSHQNSQCK 157

Query: 157 GTMSILMGLDGMVLLLSVLEFCIAVSLSAFGC 188
               + +G+   ++  S++E  I++  S  GC
Sbjct: 158 AVTVLFLGILITLMTFSIIELFISLPFSILGC 189


>gi|23110987 membrane-spanning 4-domains, subfamily A, member 1
           [Homo sapiens]
          Length = 297

 Score = 77.8 bits (190), Expect = 7e-15
 Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 30/236 (12%)

Query: 3   TMQGMEQAMPGAGPGVPQLGNMAVIHS-HLWKGLQEKFLKGEPKVLGVVQILTALMSLSM 61
           ++ G   A P  GP   Q G   +        G  + F   E K LG VQI+  L  +++
Sbjct: 7   SVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFFMRESKTLGAVQIMNGLFHIAL 66

Query: 62  GITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNITS 121
           G  +M  A   Y   PI V + Y +WG +M+IISGSL  A    + K LV+G + MN  S
Sbjct: 67  GGLLMIPAG-IYA--PICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMNSLS 123

Query: 122 SVLAASGILINTF--------------SLAFYSFHHPYCNYYG------------NSNNC 155
              A SG++++                SL F   H PY N Y             ++  C
Sbjct: 124 LFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNSPSTQYC 183

Query: 156 HGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCCTPGGVVLILPSHSHMAET 211
           +   S+ +G+  ++L+ +  +  +   +     K  C  P   +++L +     +T
Sbjct: 184 YSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQT 239


>gi|23110989 membrane-spanning 4-domains, subfamily A, member 1
           [Homo sapiens]
          Length = 297

 Score = 77.8 bits (190), Expect = 7e-15
 Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 30/236 (12%)

Query: 3   TMQGMEQAMPGAGPGVPQLGNMAVIHS-HLWKGLQEKFLKGEPKVLGVVQILTALMSLSM 61
           ++ G   A P  GP   Q G   +        G  + F   E K LG VQI+  L  +++
Sbjct: 7   SVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFFMRESKTLGAVQIMNGLFHIAL 66

Query: 62  GITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNITS 121
           G  +M  A   Y   PI V + Y +WG +M+IISGSL  A    + K LV+G + MN  S
Sbjct: 67  GGLLMIPAG-IYA--PICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMNSLS 123

Query: 122 SVLAASGILINTF--------------SLAFYSFHHPYCNYYG------------NSNNC 155
              A SG++++                SL F   H PY N Y             ++  C
Sbjct: 124 LFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNSPSTQYC 183

Query: 156 HGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCCTPGGVVLILPSHSHMAET 211
           +   S+ +G+  ++L+ +  +  +   +     K  C  P   +++L +     +T
Sbjct: 184 YSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQT 239


>gi|4503677 membrane-spanning 4-domains, subfamily A, member 2
           isoform 1 [Homo sapiens]
          Length = 244

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 58/155 (37%), Positives = 79/155 (50%), Gaps = 12/155 (7%)

Query: 40  LKGEPKVLGVVQILTALMSLSMGITMMCMA---SNTYGSNPISVYIGYTIWGSVMFIISG 96
           LK E + LGV QILTA++ L  G T++C     S+  G    S   GY  WG++ F ISG
Sbjct: 54  LKKEQEFLGVTQILTAMICLCFG-TVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISG 112

Query: 97  SLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILINTF----SLAFYSFHHPYCNYYGNS 152
            LSI +  R    LVRGSLG N  SS+   +GI I       SLA+   H   C  +  +
Sbjct: 113 MLSIISERRNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHS--CQKFFET 170

Query: 153 NNCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFG 187
                + S  + +  M+L L++L    AVSL+  G
Sbjct: 171 KCFMASFSTEIVV--MMLFLTILGLGSAVSLTICG 203


>gi|23238238 membrane-spanning 4-domains, subfamily A, member 6A
           isoform 1 [Homo sapiens]
          Length = 248

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 20/194 (10%)

Query: 37  EKFLKGEPKVLGVVQILTALMSLSMGITMMCMASNTYGSNPISVYIG--YTIWGSVMFII 94
           +K L  E KV+G +QIL  +M LS+GI +   + +   +   S  +   Y   G   FII
Sbjct: 38  KKHLHAEIKVIGTIQILCGMMVLSLGIILASASFSPNFTQVTSTLLNSAYPFIGPFFFII 97

Query: 95  SGSLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILINTFSLAFYSFHHPYCN------- 147
           SGSLSIA   R TK LV  SL  +I S++ A  G +I +   A  +     C        
Sbjct: 98  SGSLSIATEKRLTKLLVHSSLVGSILSALSALVGFIILSVKQATLNPASLQCELDKNNIP 157

Query: 148 -------YYGNS---NNCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCCTPGG 197
                  +Y +S    +C+   + L G   ++L+ ++LEFC+AV  +    K       G
Sbjct: 158 TRSYVSYFYHDSLYTTDCYTAKASLAGTLSLMLICTLLEFCLAVLTAVLRWKQAYSDFPG 217

Query: 198 VVLILPSHSHMAET 211
            VL LP HS++  +
Sbjct: 218 SVLFLP-HSYIGNS 230


>gi|119226217 membrane-spanning 4-domains, subfamily A, member 14
           isoform 1 [Homo sapiens]
          Length = 679

 Score = 71.2 bits (173), Expect = 6e-13
 Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 39  FLKGEPKVLGVVQILTALMSLSMGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSL 98
           FLKGEP+VLG  QIL AL+ +  G              P+ V  GY  WG+++FI++G L
Sbjct: 37  FLKGEPRVLGATQILLALIIVGFGTIFALNYIGFSQRLPLVVLTGYPFWGALIFILTGYL 96

Query: 99  SIAAGIRTTKGLVRGSLGMNITSSVLAASGILINTFSLAFYSFHHPYC 146
           ++    + +K L +G  GMN+ SS++A +GI   TF++  Y     YC
Sbjct: 97  TVTD--KKSKLLGQGVTGMNVISSLVAITGI---TFTILSYRHQDKYC 139


>gi|214831008 membrane-spanning 4-domains, subfamily A, member 2
           isoform 2 [Homo sapiens]
          Length = 195

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 47/110 (42%), Positives = 59/110 (53%), Gaps = 8/110 (7%)

Query: 40  LKGEPKVLGVVQILTALMSLSMGITMMCMA---SNTYGSNPISVYIGYTIWGSVMFIISG 96
           LK E + LGV QILTA++ L  G T++C     S+  G    S   GY  WG++ F ISG
Sbjct: 54  LKKEQEFLGVTQILTAMICLCFG-TVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISG 112

Query: 97  SLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILINTF----SLAFYSFH 142
            LSI +  R    LVRGSLG N  SS+   +GI I       SLA+   H
Sbjct: 113 MLSIISERRNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIH 162


>gi|169202868 PREDICTED: similar to membrane-spanning 4-domains,
           subfamily A, member 8B [Homo sapiens]
          Length = 391

 Score = 67.8 bits (164), Expect = 7e-12
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 22/206 (10%)

Query: 17  GVPQLGNMAVIHSHLWKGLQEKFLKGEPKV-LGVVQILTALMSLSMGITMMCMASNT--Y 73
           G   L N+ V++ +   G+Q + +  + +  +G   + TA+  L +G+T +  A N   Y
Sbjct: 112 GRANLQNLLVVNQNSAAGVQSQPIGYQRQYPVGTASLQTAIQIL-IGLTHIFSAINPVLY 170

Query: 74  GSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILINT 133
               ++   GY +WG + +I+SGSLS+ A    +  +V  S+  NI S++ A +GI I  
Sbjct: 171 YYPFVTWLSGYPLWGGLSYIVSGSLSVWAAKDPSPCVVNSSISFNIISALFAFAGIFIII 230

Query: 134 FSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCC 193
             L+ Y     Y   Y  +            + G +L  ++LEF +   +S FGC+  CC
Sbjct: 231 TDLSLY-----YVTTYSKA------------VSGGLLPFALLEFILTCVVSHFGCQATCC 273

Query: 194 TPGGVVLILPS-HSHMAETASPTPLN 218
                V ++P+  S      + +P+N
Sbjct: 274 RQFENVAVIPTVFSFNPANTTTSPVN 299


>gi|169203526 PREDICTED: similar to membrane-spanning 4-domains,
           subfamily A, member 8B [Homo sapiens]
          Length = 391

 Score = 67.8 bits (164), Expect = 7e-12
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 22/206 (10%)

Query: 17  GVPQLGNMAVIHSHLWKGLQEKFLKGEPKV-LGVVQILTALMSLSMGITMMCMASNT--Y 73
           G   L N+ V++ +   G+Q + +  + +  +G   + TA+  L +G+T +  A N   Y
Sbjct: 112 GRANLQNLLVVNQNSAAGVQSQPIGYQRQYPVGTASLQTAIQIL-IGLTHIFSAINPVLY 170

Query: 74  GSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILINT 133
               ++   GY +WG + +I+SGSLS+ A    +  +V  S+  NI S++ A +GI I  
Sbjct: 171 YYPFVTWLSGYPLWGGLSYIVSGSLSVWAAKDPSPCVVNSSISFNIISALFAFAGIFIII 230

Query: 134 FSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCC 193
             L+ Y     Y   Y  +            + G +L  ++LEF +   +S FGC+  CC
Sbjct: 231 TDLSLY-----YVTTYSKA------------VSGGLLPFALLEFILTCVVSHFGCQATCC 273

Query: 194 TPGGVVLILPS-HSHMAETASPTPLN 218
                V ++P+  S      + +P+N
Sbjct: 274 RQFENVAVIPTVFSFNPANTTTSPVN 299


>gi|169202217 PREDICTED: similar to membrane-spanning 4-domains,
           subfamily A, member 8B [Homo sapiens]
          Length = 391

 Score = 67.8 bits (164), Expect = 7e-12
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 22/206 (10%)

Query: 17  GVPQLGNMAVIHSHLWKGLQEKFLKGEPKV-LGVVQILTALMSLSMGITMMCMASNT--Y 73
           G   L N+ V++ +   G+Q + +  + +  +G   + TA+  L +G+T +  A N   Y
Sbjct: 112 GRANLQNLLVVNQNSAAGVQSQPIGYQRQYPVGTASLQTAIQIL-IGLTHIFSAINPVLY 170

Query: 74  GSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILINT 133
               ++   GY +WG + +I+SGSLS+ A    +  +V  S+  NI S++ A +GI I  
Sbjct: 171 YYPFVTWLSGYPLWGGLSYIVSGSLSVWAAKDPSPCVVNSSISFNIISALFAFAGIFIII 230

Query: 134 FSLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCC 193
             L+ Y     Y   Y  +            + G +L  ++LEF +   +S FGC+  CC
Sbjct: 231 TDLSLY-----YVTTYSKA------------VSGGLLPFALLEFILTCVVSHFGCQATCC 273

Query: 194 TPGGVVLILPS-HSHMAETASPTPLN 218
                V ++P+  S      + +P+N
Sbjct: 274 RQFENVAVIPTVFSFNPANTTTSPVN 299


>gi|23238234 membrane-spanning 4-domains, subfamily A, member 6A
           isoform 2 [Homo sapiens]
          Length = 225

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 19/164 (11%)

Query: 37  EKFLKGEPKVLGVVQILTALMSLSMGITMMCMASNTYGSNPISVYIG--YTIWGSVMFII 94
           +K L  E KV+G +QIL  +M LS+GI +   + +   +   S  +   Y   G   FII
Sbjct: 38  KKHLHAEIKVIGTIQILCGMMVLSLGIILASASFSPNFTQVTSTLLNSAYPFIGPFFFII 97

Query: 95  SGSLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILINTFSLAFYSFHHPYCN------- 147
           SGSLSIA   R TK LV  SL  +I S++ A  G +I +   A  +     C        
Sbjct: 98  SGSLSIATEKRLTKLLVHSSLVGSILSALSALVGFIILSVKQATLNPASLQCELDKNNIP 157

Query: 148 -------YYGNS---NNCHGTMSILMGLDGMVLLLSVLEFCIAV 181
                  +Y +S    +C+   + L G   ++L+ ++LEFC+AV
Sbjct: 158 TRSYVSYFYHDSLYTTDCYTAKASLAGTLSLMLICTLLEFCLAV 201


>gi|11139299 membrane-spanning 4-domains, subfamily A, member 7
           isoform 1 [Homo sapiens]
          Length = 240

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 27/227 (11%)

Query: 6   GMEQAMPGAGPGVPQL---GNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSLSMG 62
           G+  +    G  +PQ    G+M     +L  GL       E  VLG VQIL  L+  S+G
Sbjct: 9   GVSHSFTPKGITIPQREKPGHMYQNEDYLQNGLPT-----ETTVLGTVQILCCLLISSLG 63

Query: 63  ITMMCMASNTYGSNPISVYI--GYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNIT 120
             ++     ++ +  IS  +  GY   G++ F I+GSLSI +G ++TK     SL  N  
Sbjct: 64  AILVFAPYPSHFNPAISTTLMSGYPFLGALCFGITGSLSIISGKQSTKPFDLSSLTSNAV 123

Query: 121 SSVLAASGILINTFSLAF-------------YSFHHPYCNYY---GNSNNCHGTMSILMG 164
           SSV A +G+ +   S+               Y    PY  YY       +C  T   L G
Sbjct: 124 SSVTAGAGLFLLADSMVALRTASQHCGSEMDYLSSLPYSEYYYPIYEIKDCLLTSVSLTG 183

Query: 165 LDGMVLLLSVLEFCIAVSLSAFGCKVLCC-TPGGVVLILPSHSHMAE 210
           +  ++L+ +VLE  +A   S F  K L    PG       S  H+ +
Sbjct: 184 VLVVMLIFTVLELLLAAYSSVFWWKQLYSNNPGSSFSSTQSQDHIQQ 230


>gi|46249357 membrane-spanning 4-domains, subfamily A, member 7
           isoform 1 [Homo sapiens]
          Length = 240

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 27/227 (11%)

Query: 6   GMEQAMPGAGPGVPQL---GNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSLSMG 62
           G+  +    G  +PQ    G+M     +L  GL       E  VLG VQIL  L+  S+G
Sbjct: 9   GVSHSFTPKGITIPQREKPGHMYQNEDYLQNGLPT-----ETTVLGTVQILCCLLISSLG 63

Query: 63  ITMMCMASNTYGSNPISVYI--GYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNIT 120
             ++     ++ +  IS  +  GY   G++ F I+GSLSI +G ++TK     SL  N  
Sbjct: 64  AILVFAPYPSHFNPAISTTLMSGYPFLGALCFGITGSLSIISGKQSTKPFDLSSLTSNAV 123

Query: 121 SSVLAASGILINTFSLAF-------------YSFHHPYCNYY---GNSNNCHGTMSILMG 164
           SSV A +G+ +   S+               Y    PY  YY       +C  T   L G
Sbjct: 124 SSVTAGAGLFLLADSMVALRTASQHCGSEMDYLSSLPYSEYYYPIYEIKDCLLTSVSLTG 183

Query: 165 LDGMVLLLSVLEFCIAVSLSAFGCKVLCC-TPGGVVLILPSHSHMAE 210
           +  ++L+ +VLE  +A   S F  K L    PG       S  H+ +
Sbjct: 184 VLVVMLIFTVLELLLAAYSSVFWWKQLYSNNPGSSFSSTQSQDHIQQ 230


>gi|73486653 membrane-spanning 4-domains, subfamily A, member 3
           isoform b [Homo sapiens]
          Length = 168

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 92  FIISGSLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILINTFSLAFYSFHHPYCNYYGN 151
           F  SG+LS+ AGI+ T+  ++ S GMNI S+ +A  G    + ++A        C+    
Sbjct: 53  FCSSGTLSVVAGIKPTRTWIQNSFGMNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSE 112

Query: 152 SNN-CHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCC 193
           S + C+   SI  G+  ++L+L++LE C+ +S  A  C   CC
Sbjct: 113 SPDLCNYMGSISNGMVSLLLILTLLELCVTISTIAMWCNANCC 155


>gi|22749421 membrane-spanning 4-domains, subfamily A, member 15
           isoform 2 [Homo sapiens]
          Length = 147

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 23/136 (16%)

Query: 83  GYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLGMNITSSVLAASG--ILINTFSLAFYS 140
           G   WG   FIISGSLS+AA    T  LVR SLG NI S + A +G  IL+  F +    
Sbjct: 15  GVPFWGGACFIISGSLSVAAEKNHTSCLVRSSLGTNILSVMAAFAGTAILLMDFGVT--- 71

Query: 141 FHHPYCNYYGNSNNCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCCTPGGVVL 200
                     N +   G +++L        + +VLEF  AV    FGC+ +       V+
Sbjct: 72  ----------NRDVDRGYLAVL-------TIFTVLEFFTAVIAMHFGCQAIHAQASAPVI 114

Query: 201 ILPSHSHMAETASPTP 216
            LP ++  A+   P+P
Sbjct: 115 FLP-NAFSADFNIPSP 129


>gi|23238236 membrane-spanning 4-domains, subfamily A, member 6A
           isoform 3 [Homo sapiens]
          Length = 178

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 37  EKFLKGEPKVLGVVQILTALMSLSMGITMMCMASNTYGSNPISVYIG--YTIWGSVMFII 94
           +K L  E KV+G +QIL  +M LS+GI +   + +   +   S  +   Y   G   FII
Sbjct: 38  KKHLHAEIKVIGTIQILCGMMVLSLGIILASASFSPNFTQVTSTLLNSAYPFIGPFFFII 97

Query: 95  SGSLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILI 131
           SGSLSIA   R TK LV  SL  +I S++ A  G +I
Sbjct: 98  SGSLSIATEKRLTKLLVHSSLVGSILSALSALVGFII 134


>gi|119226220 membrane-spanning 4-domains, subfamily A, member 14
           isoform 2 [Homo sapiens]
          Length = 662

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 22/108 (20%)

Query: 39  FLKGEPKVLGVVQILTALMSLSMGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSL 98
           FLKGEP+VLG  QIL AL+ +  G              P+ V  GY  WG++        
Sbjct: 37  FLKGEPRVLGATQILLALIIVGFGTIFALNYIGFSQRLPLVVLTGYPFWGAL-------- 88

Query: 99  SIAAGIRTTKGLVRGSLGMNITSSVLAASGILINTFSLAFYSFHHPYC 146
                      + +G  GMN+ SS++A +GI   TF++  Y     YC
Sbjct: 89  -----------IGQGVTGMNVISSLVAITGI---TFTILSYRHQDKYC 122


>gi|46249347 membrane-spanning 4-domains, subfamily A, member 7
           isoform 2 [Homo sapiens]
          Length = 195

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 17/136 (12%)

Query: 92  FIISGSLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILINTFSLAF------------- 138
           F I+GSLSI +G ++TK     SL  N  SSV A +G+ +   S+               
Sbjct: 50  FGITGSLSIISGKQSTKPFDLSSLTSNAVSSVTAGAGLFLLADSMVALRTASQHCGSEMD 109

Query: 139 YSFHHPYCNYY---GNSNNCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCC-T 194
           Y    PY  YY       +C  T   L G+  ++L+ +VLE  +A   S F  K L    
Sbjct: 110 YLSSLPYSEYYYPIYEIKDCLLTSVSLTGVLVVMLIFTVLELLLAAYSSVFWWKQLYSNN 169

Query: 195 PGGVVLILPSHSHMAE 210
           PG       S  H+ +
Sbjct: 170 PGSSFSSTQSQDHIQQ 185


>gi|46249359 membrane-spanning 4-domains, subfamily A, member 7
           isoform 2 [Homo sapiens]
          Length = 195

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 17/136 (12%)

Query: 92  FIISGSLSIAAGIRTTKGLVRGSLGMNITSSVLAASGILINTFSLAF------------- 138
           F I+GSLSI +G ++TK     SL  N  SSV A +G+ +   S+               
Sbjct: 50  FGITGSLSIISGKQSTKPFDLSSLTSNAVSSVTAGAGLFLLADSMVALRTASQHCGSEMD 109

Query: 139 YSFHHPYCNYY---GNSNNCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCC-T 194
           Y    PY  YY       +C  T   L G+  ++L+ +VLE  +A   S F  K L    
Sbjct: 110 YLSSLPYSEYYYPIYEIKDCLLTSVSLTGVLVVMLIFTVLELLLAAYSSVFWWKQLYSNN 169

Query: 195 PGGVVLILPSHSHMAE 210
           PG       S  H+ +
Sbjct: 170 PGSSFSSTQSQDHIQQ 185


>gi|73486651 membrane-spanning 4-domains, subfamily A, member 3
           isoform c [Homo sapiens]
          Length = 91

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 117 MNITSSVLAASGILINTFSLAFYSFHHPYCNYYGNSNN-CHGTMSILMGLDGMVLLLSVL 175
           MNI S+ +A  G    + ++A        C+    S + C+   SI  G+  ++L+L++L
Sbjct: 1   MNIASATIALVGTAFLSLNIAVNIQSLRSCHSSSESPDLCNYMGSISNGMVSLLLILTLL 60

Query: 176 EFCIAVSLSAFGCKVLCC 193
           E C+ +S  A  C   CC
Sbjct: 61  ELCVTISTIAMWCNANCC 78


>gi|167466260 membrane-spanning 4-domains, subfamily A, member 10
           [Homo sapiens]
          Length = 267

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 10/138 (7%)

Query: 45  KVLGVVQILTALMSLSMGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGI 104
           K LG   I  AL+ L  G  +  +  N +    + +   Y  WG+  F+ISG L+I    
Sbjct: 58  KELGAFHITIALLHLVFGGYLASIVKNLH---LVVLKSWYPFWGAASFLISGILAITMKT 114

Query: 105 RTTKGLVRGSLGMNITSSVLAASGILINTFSLAFYS-FHHPYCNYYGNSNNCHGTMSILM 163
            +   L    L  N+ S     SG+ + +  L   S F  P    Y NS   H     + 
Sbjct: 115 FSKTYLKMLCLMTNLISLFCVLSGLFVISKDLFLESPFESPIWRMYPNS-TVH-----IQ 168

Query: 164 GLDGMVLLLSVLEFCIAV 181
            L+  +L  +VLE  + V
Sbjct: 169 RLELALLCFTVLELFLPV 186


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,123,951
Number of Sequences: 37866
Number of extensions: 312907
Number of successful extensions: 870
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 37
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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