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Search of human proteins with 196123584
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|196123584 ATP synthase F0 subunit 6 [Homo sapiens
neanderthalensis]
(226 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|196123584 ATP synthase F0 subunit 6 [Homo sapiens neanderthal... 434 e-122
gi|251831112 ATP synthase F0 subunit 6 [Homo sapiens] 426 e-120
gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo ... 35 0.052
gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo ... 35 0.052
gi|20070323 solute carrier family 30 (zinc transporter), member ... 34 0.089
gi|196123580 NADH dehydrogenase subunit 2 [Homo sapiens neandert... 31 0.75
gi|251831108 NADH dehydrogenase subunit 2 [Homo sapiens] 31 0.98
gi|7662482 dolichol kinase [Homo sapiens] 31 0.98
gi|239750169 PREDICTED: hypothetical protein XP_002347312 [Homo ... 30 2.2
gi|52353941 olfactory receptor, family 51, subfamily Q, member 1... 29 2.9
gi|20149568 NADH dehydrogenase ubiquinone flavoprotein 1 precurs... 28 4.9
gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens] 28 4.9
gi|239756382 PREDICTED: similar to KIAA1920 protein [Homo sapiens] 28 6.4
gi|95147335 inositol 1,4,5-triphosphate receptor, type 2 [Homo s... 28 6.4
gi|169166231 PREDICTED: hypothetical protein [Homo sapiens] 28 8.3
gi|34222104 hypothetical protein LOC26074 [Homo sapiens] 28 8.3
gi|25121980 dispatched B [Homo sapiens] 28 8.3
gi|24432013 zinc finger protein 668 [Homo sapiens] 28 8.3
>gi|196123584 ATP synthase F0 subunit 6 [Homo sapiens
neanderthalensis]
Length = 226
Score = 434 bits (1116), Expect = e-122
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMAM 60
MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMAM
Sbjct: 1 MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMAM 60
Query: 61 HNTKGRTWSLMLVSLIIFITTTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSK 120
HNTKGRTWSLMLVSLIIFITTTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSK
Sbjct: 61 HNTKGRTWSLMLVSLIIFITTTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSK 120
Query: 121 IKNALAHFLPQGTPTPLIPMLVIIETISLLIQPVALAVRLTANITAGHLLMHLIGNATLA 180
IKNALAHFLPQGTPTPLIPMLVIIETISLLIQPVALAVRLTANITAGHLLMHLIGNATLA
Sbjct: 121 IKNALAHFLPQGTPTPLIPMLVIIETISLLIQPVALAVRLTANITAGHLLMHLIGNATLA 180
Query: 181 MSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT 226
MSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT
Sbjct: 181 MSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT 226
>gi|251831112 ATP synthase F0 subunit 6 [Homo sapiens]
Length = 226
Score = 426 bits (1095), Expect = e-120
Identities = 221/226 (97%), Positives = 223/226 (98%)
Query: 1 MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMAM 60
MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMM M
Sbjct: 1 MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMTM 60
Query: 61 HNTKGRTWSLMLVSLIIFITTTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSK 120
HNTKGRTWSLMLVSLIIFI TTNLLGLLPHSFTPTTQLSMNLAMAIPLWAG VIMGFRSK
Sbjct: 61 HNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVIMGFRSK 120
Query: 121 IKNALAHFLPQGTPTPLIPMLVIIETISLLIQPVALAVRLTANITAGHLLMHLIGNATLA 180
IKNALAHFLPQGTPTPLIPMLVIIETISLLIQP+ALAVRLTANITAGHLLMHLIG+ATLA
Sbjct: 121 IKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTANITAGHLLMHLIGSATLA 180
Query: 181 MSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT 226
MSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT
Sbjct: 181 MSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT 226
>gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo
sapiens]
Length = 391
Score = 35.0 bits (79), Expect = 0.052
Identities = 42/213 (19%), Positives = 100/213 (46%), Gaps = 15/213 (7%)
Query: 13 TILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMAMHNTKGRTWSLML 72
T LG+ L+++ PL+ +I + ++ +TS M+ T T S+++
Sbjct: 109 TSLGVVVTSLVMVITPLVA-----VITPLGVVITSLVVVITSLVMVITSLTVVITSSIVV 163
Query: 73 VSLIIFITTTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSKIKNALAHFLPQG 132
++ ++ + T+ L ++ F T L M + I + V++ + + +L
Sbjct: 164 ITPLVMVITS-LTVIITSLFVVITPLVMVITFLIVVNTSLVVVLITLIVSPPPSLWLSAP 222
Query: 133 TPTPL----IPMLVIIETISLLIQPVALAVRLTANITAGHLLMHLIGNATLAMST---IN 185
T L IP++V+I SL++ +L V L A I L+ +I + + +++ +
Sbjct: 223 CITSLFVVIIPLVVVI--TSLIVVITSLVVVLIAVIVVTPSLIVVISSLVVVIASLVVVF 280
Query: 186 LPSTLIIFTILILLTILEIAVALIQAYVFTLLV 218
+ ++I ++++++T L + + + + +L+V
Sbjct: 281 ISLIVVISSLIVVITSLVVVITSLVVVITSLIV 313
>gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo
sapiens]
Length = 398
Score = 35.0 bits (79), Expect = 0.052
Identities = 42/213 (19%), Positives = 100/213 (46%), Gaps = 15/213 (7%)
Query: 13 TILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMAMHNTKGRTWSLML 72
T LG+ L+++ PL+ +I + ++ +TS M+ T T S+++
Sbjct: 116 TSLGVVVTSLVMVITPLVA-----VITPLGVVITSLVVVITSLVMVITSLTVVITSSIVV 170
Query: 73 VSLIIFITTTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSKIKNALAHFLPQG 132
++ ++ + T+ L ++ F T L M + I + V++ + + +L
Sbjct: 171 ITPLVMVITS-LTVIITSLFVVITPLVMVITFLIVVNTSLVVVLITLIVSPPPSLWLSAP 229
Query: 133 TPTPL----IPMLVIIETISLLIQPVALAVRLTANITAGHLLMHLIGNATLAMST---IN 185
T L IP++V+I SL++ +L V L A I L+ +I + + +++ +
Sbjct: 230 CITSLFVVIIPLVVVI--TSLIVVITSLVVVLIAVIVVTPSLIVVISSLVVVIASLVVVF 287
Query: 186 LPSTLIIFTILILLTILEIAVALIQAYVFTLLV 218
+ ++I ++++++T L + + + + +L+V
Sbjct: 288 ISLIVVISSLIVVITSLVVVITSLVVVITSLIV 320
>gi|20070323 solute carrier family 30 (zinc transporter), member 5
isoform 1 [Homo sapiens]
Length = 765
Score = 34.3 bits (77), Expect = 0.089
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 50 IKLTSKQMMAMHNTKGRTWSLMLVSLIIFI-----TTTNLLGLLP---HSFTPTTQLSMN 101
IK + KQ++ +++ + L L L F+ TN LGL+ H + L M
Sbjct: 403 IKESLKQILEESDSRQIFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMG 462
Query: 102 LAMAI-PLWAGAVIMGFRSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPVALAVRL 160
L A+ W I + L+ F+ G +I V +E+++ LI P L +
Sbjct: 463 LFAALMSRWKATRIFSYGYGRIEILSGFI-NGLFLIVIAFFVFMESVARLIDPPELDTHM 521
Query: 161 TANITAGHLLMHLIG 175
++ G L+++LIG
Sbjct: 522 LTPVSVGGLIVNLIG 536
>gi|196123580 NADH dehydrogenase subunit 2 [Homo sapiens
neanderthalensis]
Length = 347
Score = 31.2 bits (69), Expect = 0.75
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Query: 13 TILGLPAAVLIILFPPLLI---PTSKYLINNRLITTQQWLIKLTSKQMMAMHNTKGRTWS 69
TIL L +++ LL+ ++ L+ +R WL L ++++ T
Sbjct: 201 TILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPSTLLSLGGLPPLTGF 260
Query: 70 LMLVSLIIFITTTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSKIKNALAHFL 129
L ++I T N L ++P T L++ + + ++ + +K +
Sbjct: 261 LPKWAIIEEFTKNNSL-IIPTIMATITLLNLYFYLRLIYSTSITLLPMSNNVK--MKWQF 317
Query: 130 PQGTPTPLIPMLVIIETISLLIQPVALAV 158
PTP +P L+ + T+ L I P L V
Sbjct: 318 EHTKPTPFLPTLITLTTLLLPISPFMLMV 346
>gi|251831108 NADH dehydrogenase subunit 2 [Homo sapiens]
Length = 347
Score = 30.8 bits (68), Expect = 0.98
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Query: 13 TILGLPAAVLIILFPPLLI---PTSKYLINNRLITTQQWLIKLTSKQMMAMHNTKGRTWS 69
TIL L +++ LL+ ++ L+ +R WL L ++++ T
Sbjct: 201 TILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPSTLLSLGGLPPLTGF 260
Query: 70 LMLVSLIIFITTTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSKIKNALAHFL 129
L ++I T N L ++P T L++ + + ++ + +K +
Sbjct: 261 LPKWAIIEEFTKNNSL-IIPTIMATITLLNLYFYLRLIYSTSITLLPMSNNVK--MKWQF 317
Query: 130 PQGTPTPLIPMLVIIETISLLIQPVALAV 158
PTP +P L+ + T+ L I P L +
Sbjct: 318 EHTKPTPFLPTLIALTTLLLPISPFMLMI 346
>gi|7662482 dolichol kinase [Homo sapiens]
Length = 538
Score = 30.8 bits (68), Expect = 0.98
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 65 GRTWSLMLVSLIIFITTTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSKIKNA 124
G ++ V LI LL LLP FTP L L G + IK +
Sbjct: 162 GEVIEVLEVLLIFVYLNMILLYLLPRCFTPGEAL---------LVLGGISFVLNQLIKRS 212
Query: 125 LAHFLPQGTPTPLIPMLVIIETISLLIQPVALAVRLTANITAGHLLMHLI 174
L QG P ++V++ + + I L V + + A + HL+
Sbjct: 213 LTLVESQGDPVDFFLLVVVVGMVLMGIFFSTLFVFMDSGTWASSIFFHLM 262
>gi|239750169 PREDICTED: hypothetical protein XP_002347312 [Homo
sapiens]
Length = 368
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 141 LVIIETISLLIQPVALAVRLTANITAGHLLMHLIGNATLA-MSTINLPSTLIIFTILILL 199
++II ++++ L + IT H +I T+ + I + +I+ T ++LL
Sbjct: 190 ILIIHRVTVVTHEAILIIHCITVIT--HEATLIIDWVTVVTLQAIPIIDWIIVVTPVVLL 247
Query: 200 TILEIAVALIQAYVFTLLVSLYLHD 224
I ++AV + + TL V++ HD
Sbjct: 248 IIQQVAVVTHETVLITLRVTVVTHD 272
>gi|52353941 olfactory receptor, family 51, subfamily Q, member 1
[Homo sapiens]
Length = 317
Score = 29.3 bits (64), Expect = 2.9
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 16 GLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMAMHNTKGRTWSLMLVSL 75
G A+LII+ PLLI S LI ++ T W ++++ A++N S +L L
Sbjct: 201 GFALALLIIIVDPLLIVISYTLILKNILGTATW-----AERLRALNN----CLSHILAVL 251
Query: 76 IIFITTTNLLGLLPHSFTPTTQLSMNLAMA-IPLWAGAVIMGFRSKIKN 123
+++I + + H F +++ MA I L A V+ +KN
Sbjct: 252 VLYIPMVGV--SMTHRFAKHASPLVHVIMANIYLLAPPVMNPIIYSVKN 298
>gi|20149568 NADH dehydrogenase ubiquinone flavoprotein 1 precursor
[Homo sapiens]
Length = 464
Score = 28.5 bits (62), Expect = 4.9
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 83 NLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSKIKNALAHFLPQGTPTPLIPMLV 142
N+ G + H T ++S+ L I AG V G+ N LA +P G+ TPLIP V
Sbjct: 277 NISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGW----DNLLA-VIPGGSSTPLIPKSV 331
>gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]
Length = 666
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 124 ALAHFLPQGTPTPLIPMLVIIETISLLIQPVALAVRLTANITAGHLLMH 172
ALA LP P P P+L ++ + LL+ A R++++++ H + H
Sbjct: 17 ALAGPLPPPPPPPPPPLLPLLPLLLLLLLGAAEGARVSSSLSTTHHVHH 65
>gi|239756382 PREDICTED: similar to KIAA1920 protein [Homo sapiens]
Length = 483
Score = 28.1 bits (61), Expect = 6.4
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 95 TTQLSMNLAMAIPLWAGAVIMGFRSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPV 154
T ++S L + P V + +I + L QG+ P++P +++ET S + Q V
Sbjct: 156 TFRVSNGLQASPPAMLKVVAVQLAIQIHRSTGLHLAQGSAMPILPTNLLVET-SAVGQDV 214
Query: 155 ALAVRLTANI 164
+ +R+T +
Sbjct: 215 TVLLRVTGGL 224
>gi|95147335 inositol 1,4,5-triphosphate receptor, type 2 [Homo
sapiens]
Length = 2701
Score = 28.1 bits (61), Expect = 6.4
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 106 IPLWAGAVIMGFRSKIKNALAHFLP------QGTPTPLIPMLVIIETI---SLL------ 150
I LW G++ I A+A F P +GT +PL +L+ I S+L
Sbjct: 2226 ISLW-GSISFNLAVFINLAVALFYPFGDDGDEGTLSPLFSVLLWIAVAICTSMLFFFSKP 2284
Query: 151 --IQPVALAVRLTANITAG-HLLMHLIGNATLAMSTINLPSTLI---IFTILILLTILEI 204
I+P +++ L + T G + L+G A L + L S + FT IL++
Sbjct: 2285 VGIRPFLVSIMLRSIYTIGLGPTLILLGAANLCNKIVFLVSFVGNRGTFTRGYRAVILDM 2344
Query: 205 AVALIQAYVFTLLVSLYLHD 224
A AYV ++ L++H+
Sbjct: 2345 AFLYHVAYVLVCMLGLFVHE 2364
>gi|169166231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 27.7 bits (60), Expect = 8.3
Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Query: 10 IAPTILGLPAAVLIILFPP 28
+ PT LGLP A+L++LFPP
Sbjct: 79 MGPT-LGLPQALLVVLFPP 96
>gi|34222104 hypothetical protein LOC26074 [Homo sapiens]
Length = 1237
Score = 27.7 bits (60), Expect = 8.3
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 84 LLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFRSKIKNALAHFLPQGTPTPL 137
+L L + P T+ NL IP++ GA I G H PTPL
Sbjct: 1010 MLHLFDPTLEPVTEPPANLDRLIPMYKGAKIQGGILPGSYHYLHIAKPAIPTPL 1063
>gi|25121980 dispatched B [Homo sapiens]
Length = 1401
Score = 27.7 bits (60), Expect = 8.3
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 125 LAHFLPQGTPTPLIPMLVIIETISLLIQPVALAVRLTANITAGHLLMHLIGNATLAMS-- 182
L HFL Q T PL+ ++ I ++L ++ + L + + + L+ + M+
Sbjct: 481 LRHFLVQDTVYPLLALVAIFFGMALYLRSLFLTLMVLLGVLGSLLVAFFLYQVAFRMAYF 540
Query: 183 -TINLPSTLIIFTILILLTIL 202
+NL + L++ ++ T++
Sbjct: 541 PFVNLAALLLLSSVCANHTLI 561
>gi|24432013 zinc finger protein 668 [Homo sapiens]
Length = 619
Score = 27.7 bits (60), Expect = 8.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 122 KNALAHFLPQGTPTPLIPMLVII 144
K+ H +P GTPTPL P++ ++
Sbjct: 589 KHERTHPVPMGTPTPLEPLVALL 611
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.139 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,129,115
Number of Sequences: 37866
Number of extensions: 265354
Number of successful extensions: 850
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 839
Number of HSP's gapped (non-prelim): 22
length of query: 226
length of database: 18,247,518
effective HSP length: 99
effective length of query: 127
effective length of database: 14,498,784
effective search space: 1841345568
effective search space used: 1841345568
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.