Guide to the Human Genome
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Name: LOC100291351 Sequence: fasta or formatted (368aa) NCBI GI: 239750169
Description:

PREDICTED: hypothetical protein XP_002347312

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         21           1
 C cysteine            0.3          1           1
 D aspartate           1.1          4           1
 E glutamate           6.0         22           2
 F phenylalanine       1.1          4           1
 G glycine             1.9          7           1
 H histidine           9.5         35           1
 I isoleucine         17.4         64           2
 K lysine              0.8          3           1
 L leucine             7.9         29           2
 M methionine          0.5          2           1
 N asparagine          1.4          5           1
 P proline             2.2          8           2
 Q glutamine           3.8         14           2
 R arginine            3.3         12           1
 S serine              1.1          4           1
 T threonine          16.3         60           1
 V valine             17.1         63           2
 W tryptophan          1.4          5           1
 Y tyrosine            1.4          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347312 
LOC100289996          0.099   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.093   PREDICTED: hypothetical protein XP_002343076 
LOC100287936          0.020   PREDICTED: hypothetical protein XP_002343650 
LOC388849             0.016   PREDICTED: similar to hCG1732289 
C4orf41               0.015   hypothetical protein LOC60684 isoform b 
C4orf41               0.015   hypothetical protein LOC60684 isoform a 
LOC100132107          0.007   PREDICTED: hypothetical protein 
LOC100134332          0.007   PREDICTED: hypothetical protein, partial 
FAM65A                0.007   hypothetical protein LOC79567 
ATP6                  0.007   ATP synthase F0 subunit 6 
ATP6                  0.007   ATP synthase F0 subunit 6 
TSG101                0.006   tumor susceptibility gene 101 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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