Search of human proteins with 195947407

Search of human proteins with 195947407

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|195947407 excision repair cross-complementing rodent repair
deficiency, complementation group 2 protein isoform 2 [Homo sapiens]
         (405 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|195947407 excision repair cross-complementing rodent repair d...   813   0.0  
gi|15834617 excision repair cross-complementing rodent repair de...   778   0.0  
gi|91984775 regulator of telomere elongation helicase 1 isoform ...    98   2e-20
gi|7706541 regulator of telomere elongation helicase 1 isoform 1...    98   2e-20
gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Hom...    71   2e-12
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    67   2e-11
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    67   2e-11
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    67   2e-11
gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Ho...    66   5e-11
gi|119220575 mediator complex subunit 24 isoform 2 [Homo sapiens]      33   0.46 
gi|41281496 mediator complex subunit 24 isoform 1 [Homo sapiens]       33   0.46 
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]           33   0.60 
gi|63055049 phosphoglucomutase 2 [Homo sapiens]                        32   0.79 
gi|110349767 calcium channel, voltage-dependent, L type, alpha 1...    31   2.3  
gi|88196790 coiled-coil domain containing 88 [Homo sapiens]            31   2.3  
gi|162287219 prune homolog 2 [Homo sapiens]                            30   3.9  
gi|32490572 erythrocyte membrane protein band 4.1-like 3 [Homo s...    30   5.1  
gi|41327779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Homo sapi...    30   5.1  
gi|19923899 coiled-coil domain containing 45 [Homo sapiens]            29   6.7  
gi|145207994 hairy and enhancer of split 7 [Homo sapiens]              29   8.7  
gi|44890065 hypothetical protein LOC6936 [Homo sapiens]                29   8.7  
gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens]           29   8.7  

>gi|195947407 excision repair cross-complementing rodent repair
           deficiency, complementation group 2 protein isoform 2
           [Homo sapiens]
          Length = 405

 Score =  813 bits (2100), Expect = 0.0
 Identities = 405/405 (100%), Positives = 405/405 (100%)

Query: 1   MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
           MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI
Sbjct: 1   MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60

Query: 61  EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120
           EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA
Sbjct: 61  EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120

Query: 121 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV 180
           QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV
Sbjct: 121 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV 180

Query: 181 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240
           VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE
Sbjct: 181 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240

Query: 241 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 300
           TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR
Sbjct: 241 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 300

Query: 301 TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH 360
           TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH
Sbjct: 301 TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH 360

Query: 361 TLEITDLADFSPLTLLANFATLVSTYAKGQAQHCGSSRNQKRSHP 405
           TLEITDLADFSPLTLLANFATLVSTYAKGQAQHCGSSRNQKRSHP
Sbjct: 361 TLEITDLADFSPLTLLANFATLVSTYAKGQAQHCGSSRNQKRSHP 405


>gi|15834617 excision repair cross-complementing rodent repair
           deficiency, complementation group 2 protein isoform 1
           [Homo sapiens]
          Length = 760

 Score =  778 bits (2010), Expect = 0.0
 Identities = 389/389 (100%), Positives = 389/389 (100%)

Query: 1   MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
           MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI
Sbjct: 25  MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 84

Query: 61  EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120
           EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA
Sbjct: 85  EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 144

Query: 121 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV 180
           QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV
Sbjct: 145 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV 204

Query: 181 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240
           VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE
Sbjct: 205 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 264

Query: 241 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 300
           TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR
Sbjct: 265 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 324

Query: 301 TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH 360
           TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH
Sbjct: 325 TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH 384

Query: 361 TLEITDLADFSPLTLLANFATLVSTYAKG 389
           TLEITDLADFSPLTLLANFATLVSTYAKG
Sbjct: 385 TLEITDLADFSPLTLLANFATLVSTYAKG 413


>gi|91984775 regulator of telomere elongation helicase 1 isoform 2
           [Homo sapiens]
          Length = 1300

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 78/271 (28%), Positives = 116/271 (42%), Gaps = 62/271 (22%)

Query: 1   MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQR----------------------- 37
           M ++   L  K +G+LE P+GTGKT+ LL   +A++                        
Sbjct: 25  MTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLRDGISARKIAERAQGELFPDR 84

Query: 38  ----------------AYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFL 81
                           A   ++ K+IY SRT  ++ +VI ELR            K+  L
Sbjct: 85  ALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVINELRNT------SYRPKVCVL 138

Query: 82  GLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHG 141
           G    SR+ LCIHPEV            C    AS              C FY   +   
Sbjct: 139 G----SREQLCIHPEVKKQESNHLQIHLCRKKVASR------------SCHFYNNVEEKS 182

Query: 142 REVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKEL 201
            E  L + I +++DL   G +   CPY+L+R     A+++   Y+YLLD K     + +L
Sbjct: 183 LEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHNIDL 242

Query: 202 ARKAVVVFDEAHNIDNVCIDSMSVNLTRRTL 232
            +  VV+FDEAHN++ +C +S S +LT   L
Sbjct: 243 -KGTVVIFDEAHNVEKMCEESASFDLTPHDL 272


>gi|7706541 regulator of telomere elongation helicase 1 isoform 1
           [Homo sapiens]
          Length = 1219

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 78/271 (28%), Positives = 116/271 (42%), Gaps = 62/271 (22%)

Query: 1   MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQR----------------------- 37
           M ++   L  K +G+LE P+GTGKT+ LL   +A++                        
Sbjct: 25  MTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLRDGISARKIAERAQGELFPDR 84

Query: 38  ----------------AYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFL 81
                           A   ++ K+IY SRT  ++ +VI ELR            K+  L
Sbjct: 85  ALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVINELRNT------SYRPKVCVL 138

Query: 82  GLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHG 141
           G    SR+ LCIHPEV            C    AS              C FY   +   
Sbjct: 139 G----SREQLCIHPEVKKQESNHLQIHLCRKKVASR------------SCHFYNNVEEKS 182

Query: 142 REVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKEL 201
            E  L + I +++DL   G +   CPY+L+R     A+++   Y+YLLD K     + +L
Sbjct: 183 LEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHNIDL 242

Query: 202 ARKAVVVFDEAHNIDNVCIDSMSVNLTRRTL 232
            +  VV+FDEAHN++ +C +S S +LT   L
Sbjct: 243 -KGTVVIFDEAHNVEKMCEESASFDLTPHDL 272


>gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Homo
           sapiens]
          Length = 1249

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 27/220 (12%)

Query: 42  EVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLR 101
           ++ K+ + +RT  +I ++  ELR+         G  +  L    SSR + C+HPEV    
Sbjct: 242 KIPKIYFGTRTHKQIAQITRELRRTA-----YSGVPMTIL----SSRDHTCVHPEVVG-N 291

Query: 102 FGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLP-----AGIYNLDDL 156
           F +  + KC  L             +   C FY        +  L         +++++L
Sbjct: 292 FNR--NEKCMELL---------DGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEEL 340

Query: 157 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 216
            +LG++   CPY+ AR  I  A+++   Y+YLLD +I + +   L ++ VV+ DEAHNI+
Sbjct: 341 VSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIE 399

Query: 217 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQR 256
           +   +S S ++T   L   +  L+++    +R K+ +  R
Sbjct: 400 DCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLR 439



 Score = 35.4 bits (80), Expect = 0.093
 Identities = 15/38 (39%), Positives = 28/38 (73%)

Query: 1  MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRA 38
          M  + R L++K H +LE P+G+GK+++LL   +A+Q++
Sbjct: 29 MNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66


>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 2 [Homo sapiens]
          Length = 856

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 20/210 (9%)

Query: 43  VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 102
           +TK+ YCSRT  ++ + + E++K         G+ +  +  +L SR+NLC++ +V  L  
Sbjct: 226 ITKIYYCSRTHSQLAQFVHEVKK------SPFGKDVRLV--SLGSRQNLCVNEDVKSLGS 277

Query: 103 GKDVDGKCHSLTASYVRAQYQHDTSLPH---------CRFYEEFDAHGREVPLPAGIYNL 153
            + ++ +C  +  S    +   +   P          C FY             A + ++
Sbjct: 278 VQLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDM 337

Query: 154 DDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAH 213
           + L ALG+    CPY+ +R +I  A +VV  Y  LL           L +  VV+ DEAH
Sbjct: 338 EQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAH 396

Query: 214 NIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 243
           N+ +      SV ++   L  CQ + + LQ
Sbjct: 397 NLIDTITGMHSVEVSGSQL--CQAHSQLLQ 424



 Score = 34.7 bits (78), Expect = 0.16
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 1  MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAY 39
          M EL R L+A   G+ E P+GTGK++SL+   +++ R +
Sbjct: 27 MAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDF 65


>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 1 [Homo sapiens]
          Length = 906

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 20/210 (9%)

Query: 43  VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 102
           +TK+ YCSRT  ++ + + E++K         G+ +  +  +L SR+NLC++ +V  L  
Sbjct: 226 ITKIYYCSRTHSQLAQFVHEVKK------SPFGKDVRLV--SLGSRQNLCVNEDVKSLGS 277

Query: 103 GKDVDGKCHSLTASYVRAQYQHDTSLPH---------CRFYEEFDAHGREVPLPAGIYNL 153
            + ++ +C  +  S    +   +   P          C FY             A + ++
Sbjct: 278 VQLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDM 337

Query: 154 DDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAH 213
           + L ALG+    CPY+ +R +I  A +VV  Y  LL           L +  VV+ DEAH
Sbjct: 338 EQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAH 396

Query: 214 NIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 243
           N+ +      SV ++   L  CQ + + LQ
Sbjct: 397 NLIDTITGMHSVEVSGSQL--CQAHSQLLQ 424



 Score = 34.7 bits (78), Expect = 0.16
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 1  MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAY 39
          M EL R L+A   G+ E P+GTGK++SL+   +++ R +
Sbjct: 27 MAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDF 65


>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 3 [Homo sapiens]
          Length = 970

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 20/210 (9%)

Query: 43  VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 102
           +TK+ YCSRT  ++ + + E++K         G+ +  +  +L SR+NLC++ +V  L  
Sbjct: 226 ITKIYYCSRTHSQLAQFVHEVKK------SPFGKDVRLV--SLGSRQNLCVNEDVKSLGS 277

Query: 103 GKDVDGKCHSLTASYVRAQYQHDTSLPH---------CRFYEEFDAHGREVPLPAGIYNL 153
            + ++ +C  +  S    +   +   P          C FY             A + ++
Sbjct: 278 VQLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDM 337

Query: 154 DDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAH 213
           + L ALG+    CPY+ +R +I  A +VV  Y  LL           L +  VV+ DEAH
Sbjct: 338 EQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAH 396

Query: 214 NIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 243
           N+ +      SV ++   L  CQ + + LQ
Sbjct: 397 NLIDTITGMHSVEVSGSQL--CQAHSQLLQ 424



 Score = 34.7 bits (78), Expect = 0.16
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 1  MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAY 39
          M EL R L+A   G+ E P+GTGK++SL+   +++ R +
Sbjct: 27 MAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDF 65


>gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Homo
           sapiens]
          Length = 906

 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 20/210 (9%)

Query: 43  VTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRF 102
           +TK+ +CSRT  ++ + + E++K         G+ +  +  +L SR+NLC++ +V  L  
Sbjct: 226 ITKIYHCSRTHSQLAQFVHEVKK------SPFGKDVRLV--SLGSRQNLCVNEDVRSLGS 277

Query: 103 GKDVDGKCHSLTASYVRAQYQHDTSLPH---------CRFYEEFDAHGREVPLPAGIYNL 153
            + ++ +C  +  S    +   +   P          C FY             A + ++
Sbjct: 278 VQLINNRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVKDM 337

Query: 154 DDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAH 213
           + L ALG+    CPY+ +R +I  A +VV  Y  LL           L +  VV+ DEAH
Sbjct: 338 EQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAH 396

Query: 214 NIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 243
           N+ +      SV ++   L  CQ + + LQ
Sbjct: 397 NLIDTTTSMHSVEVSGSQL--CQAHSQLLQ 424



 Score = 34.7 bits (78), Expect = 0.16
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 1  MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAY 39
          M EL R L+A   G+ E P+GTGK++SL+   +++ R +
Sbjct: 27 MAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDF 65


>gi|119220575 mediator complex subunit 24 isoform 2 [Homo sapiens]
          Length = 976

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 16/109 (14%)

Query: 302 AEHFLGFLRRLLEYVKWRLRVQHVVQE---------SPPAFLSGLAQRVCIQRKPLRFCA 352
           AE  +G  R LL  + W LR      E         +P A    LA  +C+QR      +
Sbjct: 101 AEECIGLCRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLA--MCLQRLEKTLSS 158

Query: 353 ERLRSLLHTLEITDLA-----DFSPLTLLANFATLVSTYAKGQAQHCGS 396
            + R+LLH  ++ + +     + S L L    A L +   + QA+ CG+
Sbjct: 159 TKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLSNPQLRSQAEQCGT 207


>gi|41281496 mediator complex subunit 24 isoform 1 [Homo sapiens]
          Length = 989

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 16/109 (14%)

Query: 302 AEHFLGFLRRLLEYVKWRLRVQHVVQE---------SPPAFLSGLAQRVCIQRKPLRFCA 352
           AE  +G  R LL  + W LR      E         +P A    LA  +C+QR      +
Sbjct: 114 AEECIGLCRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLA--MCLQRLEKTLSS 171

Query: 353 ERLRSLLHTLEITDLA-----DFSPLTLLANFATLVSTYAKGQAQHCGS 396
            + R+LLH  ++ + +     + S L L    A L +   + QA+ CG+
Sbjct: 172 TKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLSNPQLRSQAEQCGT 220


>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
          Length = 1397

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 138 DAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHA 178
           D  G + P P+G+  LDDL  +G R  + P F  R  +LHA
Sbjct: 302 DLPGPQAPPPSGLQGLDDLGYIGYR-SYSPSFQRRTGLLHA 341


>gi|63055049 phosphoglucomutase 2 [Homo sapiens]
          Length = 612

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 136 EFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAD 195
           EF   G    +  GI  ++DL  +   QG+C Y   ++S L    +V S+     P    
Sbjct: 56  EFGTAGLRAAMGPGISRMNDLTIIQTTQGFCRYLEKQFSDLKQKGIVISFDARAHPSSGG 115

Query: 196 LVSKELARKAVVVF 209
             S+  AR A   F
Sbjct: 116 -SSRRFARLAATTF 128


>gi|110349767 calcium channel, voltage-dependent, L type, alpha 1S
            subunit [Homo sapiens]
          Length = 1873

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 239  LETLQKTVLRIK-ETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPG 297
            L  L +T L+IK E + ++  +E R +++ + + ++ +  D  +  P+  DEV       
Sbjct: 1467 LFALVRTALKIKTEGNFEQANEELRAIIKKIWKRTSMKLLD-QVIPPIGDDEVTVGKFYA 1525

Query: 298  SIRTAEHFLGFLRRLLEYVKWR 319
            +    EHF  F++R  EY  +R
Sbjct: 1526 TFLIQEHFRKFMKRQEEYYGYR 1547


>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
          Length = 1476

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 227 LTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVL 286
           L R  L      L++L+  V ++ E + + L  E +R +E      +  E     A P L
Sbjct: 393 LLRTRLGEAHAELDSLRHQVDQLAEENVE-LELELQRSLEP--PPGSPGEAPLAGAAPSL 449

Query: 287 PDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESP 330
            DEV +EA  G +RT E     LR LL+ ++ +   QH + E+P
Sbjct: 450 QDEV-REAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAP 492


>gi|162287219 prune homolog 2 [Homo sapiens]
          Length = 3088

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 211  EAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLRE 270
            +A +  ++C DS +   T + L  C G      +  L   E DE+ + +  R  V    E
Sbjct: 2100 QASDSPDICHDSEAKQETEKHLSACMGPEVESSELCLTEPEIDEEPIYEPGREFVPSNAE 2159

Query: 271  ASAARETDAHLANPVLPDEVLQEAVPGSIRTAEH 304
              +   T       VLP    Q  + GS + A H
Sbjct: 2160 LDSENAT-------VLPPIGYQADIKGSSQPASH 2186


>gi|32490572 erythrocyte membrane protein band 4.1-like 3 [Homo
           sapiens]
          Length = 1087

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 18/84 (21%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 211 EAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLRE 270
           E+   ++  + +  +  T+  L + Q N+  L++T L  + + +  + +E+ + +     
Sbjct: 707 ESDQEEDAELKAQELEKTQDDLMKHQTNISELKRTFL--ETSTDTAVTNEWEKRLSTSPV 764

Query: 271 ASAARETDAHLANPVLPDEVLQEA 294
             AAR+ DA +  P++P+E  Q +
Sbjct: 765 RLAARQEDAPMIEPLVPEETKQSS 788


>gi|41327779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Homo
           sapiens]
          Length = 600

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 256 RLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRR 311
           RL D +RR  EGL  AS  R  D  + +    D +L      SI T   FL   RR
Sbjct: 144 RLEDMFRRKAEGLDLASCVRSLDVLVLDEA--DRLLDMGFEASINTILEFLPKQRR 197


>gi|19923899 coiled-coil domain containing 45 [Homo sapiens]
          Length = 821

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 11/77 (14%)

Query: 178 ANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHN----IDNVCIDSMSVNLTRRTLD 233
           ANV +  Y  +L  K+ DL+    +++     D+AHN    ID++ +D + V+L+  T +
Sbjct: 33  ANVFIALYQSILGEKVPDLIVIPRSQE-----DDAHNVQAVIDSLALDYLQVSLSHITGE 87

Query: 234 R-CQGNLETLQKTVLRI 249
              +G+ E++ K +L I
Sbjct: 88  NIVKGDKESI-KNLLEI 103


>gi|145207994 hairy and enhancer of split 7 [Homo sapiens]
          Length = 225

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 249 IKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 300
           +K   E+R RD   R +E LR     R  D +L NP L    + E   G +R
Sbjct: 16  LKPLVEKRRRDRINRSLEELRLLLLERTRDQNLRNPKLEKAEILEFAVGYLR 67


>gi|44890065 hypothetical protein LOC6936 [Homo sapiens]
          Length = 781

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 26/155 (16%)

Query: 227 LTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVL 286
           L+R+      GN    +KT   ++E + +R +    R++ G         +D  L +  +
Sbjct: 380 LSRKDETSTSGNFSVDEKTQWILEEIESRRTKRRQARVLSGNCNHQEGTSSDDELPSAEM 439

Query: 287 PD------EVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQR 340
            D      ++LQ+         + F      LL++ +WR +      E   AF+S     
Sbjct: 440 IDFQKSQGDILQKQKKVFEEVQDDFCNIQNILLKFQQWREKFPDSYYE---AFIS----- 491

Query: 341 VCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTL 375
           +CI +            LL+ L    L D++PL L
Sbjct: 492 LCIPK------------LLNPLIRVQLIDWNPLKL 514


>gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens]
          Length = 1194

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 233 DRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 292
           +     L+   K  L  +E  E+R+    +R +   REA++  + +  L N +   E L 
Sbjct: 281 EEANSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESL- 339

Query: 293 EAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLR--- 349
                  R +E     L   L+  K +L+      E+ P   + LAQRV    K      
Sbjct: 340 ------YRQSEEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHG 393

Query: 350 FCAERLRSLLHTLE 363
              ERLR L   LE
Sbjct: 394 NFEERLRQLEAQLE 407


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,565,646
Number of Sequences: 37866
Number of extensions: 614843
Number of successful extensions: 1862
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1823
Number of HSP's gapped (non-prelim): 31
length of query: 405
length of database: 18,247,518
effective HSP length: 105
effective length of query: 300
effective length of database: 14,271,588
effective search space: 4281476400
effective search space used: 4281476400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.