Guide to the Human Genome
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Name: AIFM1 Sequence: fasta or formatted (261aa) NCBI GI: 195927004
Description:

programmed cell death 8 isoform 4

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
Mitochondria

Other entries for this name:
alt prot [324aa] programmed cell death 8 isoform 5
alt prot [609aa] programmed cell death 8 isoform 2
alt prot [326aa] programmed cell death 8 isoform 3
alt prot [613aa] programmed cell death 8 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         23           2
 C cysteine            0.4          1           1
 D aspartate           6.1         16           1
 E glutamate           8.0         21           1
 F phenylalanine       3.1          8           1
 G glycine             9.6         25           2
 H histidine           2.7          7           2
 I isoleucine          6.5         17           2
 K lysine              6.1         16           1
 L leucine             6.1         16           2
 M methionine          1.9          5           1
 N asparagine          3.8         10           1
 P proline             4.6         12           2
 Q glutamine           3.1          8           1
 R arginine            5.0         13           3
 S serine              6.5         17           2
 T threonine           3.8         10           1
 V valine             10.3         27           3
 W tryptophan          1.5          4           1
 Y tyrosine            1.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   programmed cell death 8 isoform 4 
AIFM1                 1.000   programmed cell death 8 isoform 3 
AIFM1                 1.000   programmed cell death 8 isoform 2 
AIFM1                 1.000   programmed cell death 8 isoform 1 
NCOR1                 0.022   nuclear receptor co-repressor 1 
PRKCSH                0.018   protein kinase C substrate 80K-H isoform 1 
PHLPP2                0.016   PH domain and leucine rich repeat protein phosphatas...
REXO1                 0.016   transcription elongation factor B polypeptide 3 bin...
HNRNPUL2              0.010   heterogeneous nuclear ribonucleoprotein U-like 2 [H...
LOC123855             0.008   PREDICTED: similar to hCG2042536 
NPAT                  0.008   nuclear protein,  ataxia-telangiectasia locus [Homo...
CBWD6                 0.008   COBW domain containing 6 
CBWD3                 0.008   COBW domain containing 3 
ANK2                  0.008   ankyrin 2 isoform 1 
KCNB2                 0.008   potassium voltage-gated channel, Shab-related subfam...
PPP1R12B              0.008   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.008   protein phosphatase 1, regulatory (inhibitor) subunit...
KIAA1737              0.008   KIAA1737 protein 
KCNK7                 0.008   potassium channel, subfamily K, member 7 isoform A [...
AKAP12                0.006   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.006   A kinase (PRKA) anchor protein 12 isoform 2 
LOC123855             0.006   PREDICTED: similar to hCG2042536 
ADRA2B                0.006   alpha-2B-adrenergic receptor 
BAT2                  0.006   HLA-B associated transcript-2 
ZBTB7A                0.006   zinc finger and BTB domain containing 7A 
RNF103                0.006   ring finger protein 103 
PALM2-AKAP2           0.006   PALM2-AKAP2 protein isoform 2 
PALM2-AKAP2           0.006   PALM2-AKAP2 protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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