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Search of human proteins with 194306567
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194306567 replication factor C 5 isoform 2 [Homo sapiens]
(319 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194306571 replication factor C 5 isoform 2 [Homo sapiens] 627 e-180
gi|194306567 replication factor C 5 isoform 2 [Homo sapiens] 627 e-180
gi|6677723 replication factor C 5 isoform 1 [Homo sapiens] 625 e-179
gi|194306569 replication factor C 5 isoform 3 [Homo sapiens] 498 e-141
gi|31881687 replication factor C 4 [Homo sapiens] 210 1e-54
gi|4506491 replication factor C 4 [Homo sapiens] 210 1e-54
gi|31563534 replication factor C 2 isoform 1 [Homo sapiens] 209 2e-54
gi|28882049 replication factor C 2 isoform 2 [Homo sapiens] 162 3e-40
gi|108773789 replication factor C 3 isoform 2 [Homo sapiens] 100 2e-21
gi|4506489 replication factor C 3 isoform 1 [Homo sapiens] 100 2e-21
gi|27501458 CTF18, chromosome transmission fidelity factor 18 ho... 51 1e-06
gi|32528306 replication factor C large subunit [Homo sapiens] 50 3e-06
gi|18426902 Werner helicase interacting protein isoform 1 [Homo ... 48 1e-05
gi|19718796 RAD17 homolog isoform 1 [Homo sapiens] 46 5e-05
gi|19718794 RAD17 homolog isoform 1 [Homo sapiens] 46 5e-05
gi|19718792 RAD17 homolog isoform 1 [Homo sapiens] 46 5e-05
gi|19718784 RAD17 homolog isoform 1 [Homo sapiens] 46 5e-05
gi|4506383 RAD17 homolog isoform 1 [Homo sapiens] 46 5e-05
gi|19718786 RAD17 homolog isoform 2 [Homo sapiens] 46 5e-05
gi|18426904 Werner helicase interacting protein isoform 2 [Homo ... 43 4e-04
gi|4502703 cell division cycle 6 protein [Homo sapiens] 37 0.018
gi|21361144 proteasome 26S ATPase subunit 3 [Homo sapiens] 37 0.023
gi|194018490 ATPase family, AAA domain containing 3C [Homo sapiens] 37 0.023
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens] 36 0.040
gi|119964730 BCS1-like [Homo sapiens] 35 0.068
gi|4757852 BCS1-like [Homo sapiens] 35 0.068
gi|75677353 AAA-ATPase TOB3 [Homo sapiens] 35 0.088
gi|31377667 peroxisomal LON protease-like [Homo sapiens] 34 0.20
gi|42476028 ATPase family, AAA domain containing 3A [Homo sapiens] 34 0.20
gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens] 33 0.26
>gi|194306571 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 627 bits (1618), Expect = e-180
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 60
MVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK
Sbjct: 1 MVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 60
Query: 61 EFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 120
EFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV
Sbjct: 61 EFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 120
Query: 121 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 180
IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG
Sbjct: 121 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 180
Query: 181 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 240
MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT
Sbjct: 181 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 240
Query: 241 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 300
AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ
Sbjct: 241 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 300
Query: 301 LSSLIAAFQVTRDLIVAEA 319
LSSLIAAFQVTRDLIVAEA
Sbjct: 301 LSSLIAAFQVTRDLIVAEA 319
>gi|194306567 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 627 bits (1618), Expect = e-180
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 60
MVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK
Sbjct: 1 MVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 60
Query: 61 EFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 120
EFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV
Sbjct: 61 EFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 120
Query: 121 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 180
IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG
Sbjct: 121 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 180
Query: 181 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 240
MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT
Sbjct: 181 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 240
Query: 241 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 300
AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ
Sbjct: 241 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 300
Query: 301 LSSLIAAFQVTRDLIVAEA 319
LSSLIAAFQVTRDLIVAEA
Sbjct: 301 LSSLIAAFQVTRDLIVAEA 319
>gi|6677723 replication factor C 5 isoform 1 [Homo sapiens]
Length = 340
Score = 625 bits (1613), Expect = e-179
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVI 121
FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVI
Sbjct: 83 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVI 142
Query: 122 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 181
EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM
Sbjct: 143 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 202
Query: 182 KALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTA 241
KALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTA
Sbjct: 203 KALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTA 262
Query: 242 YRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQL 301
YRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQL
Sbjct: 263 YRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQL 322
Query: 302 SSLIAAFQVTRDLIVAEA 319
SSLIAAFQVTRDLIVAEA
Sbjct: 323 SSLIAAFQVTRDLIVAEA 340
>gi|194306569 replication factor C 5 isoform 3 [Homo sapiens]
Length = 255
Score = 498 bits (1283), Expect = e-141
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 65 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 124
MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF
Sbjct: 1 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 60
Query: 125 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 184
TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL
Sbjct: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 120
Query: 185 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 244
VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN
Sbjct: 121 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 180
Query: 245 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 304
ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL
Sbjct: 181 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 240
Query: 305 IAAFQVTRDLIVAEA 319
IAAFQVTRDLIVAEA
Sbjct: 241 IAAFQVTRDLIVAEA 255
>gi|31881687 replication factor C 4 [Homo sapiens]
Length = 363
Score = 210 bits (535), Expect = 1e-54
Identities = 122/314 (38%), Positives = 191/314 (60%), Gaps = 10/314 (3%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
VEKYRP+ ++++ +++++ ++K + LP+LL YGPPGTGKTSTILA A++L+ +
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-------FKLVILDEADAMTQDAQ 114
F VLELNASD+RGI ++R + +FA + FK+VILDEAD+MT AQ
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQ 160
Query: 115 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKV 174
ALRR +EK ++ TRFCLICNY+S+II L SRC++FRF PL+ ++ RL + ++E V
Sbjct: 161 AALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENV 220
Query: 175 DISEDGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDW 232
IS++G+ LV +S GD+R+A+ LQS T + GK +TE+ + G I +
Sbjct: 221 KISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAA 280
Query: 233 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 292
+ F + +L +G A ++ ++H V + + + K+A+++ L+
Sbjct: 281 CQSGSFDKLEAVVKDLID-EGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLA 339
Query: 293 VGTNEKIQLSSLIA 306
G +E +QL SL A
Sbjct: 340 DGADEHLQLISLCA 353
>gi|4506491 replication factor C 4 [Homo sapiens]
Length = 363
Score = 210 bits (535), Expect = 1e-54
Identities = 122/314 (38%), Positives = 191/314 (60%), Gaps = 10/314 (3%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
VEKYRP+ ++++ +++++ ++K + LP+LL YGPPGTGKTSTILA A++L+ +
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-------FKLVILDEADAMTQDAQ 114
F VLELNASD+RGI ++R + +FA + FK+VILDEAD+MT AQ
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQ 160
Query: 115 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKV 174
ALRR +EK ++ TRFCLICNY+S+II L SRC++FRF PL+ ++ RL + ++E V
Sbjct: 161 AALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENV 220
Query: 175 DISEDGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDW 232
IS++G+ LV +S GD+R+A+ LQS T + GK +TE+ + G I +
Sbjct: 221 KISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAA 280
Query: 233 MLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLS 292
+ F + +L +G A ++ ++H V + + + K+A+++ L+
Sbjct: 281 CQSGSFDKLEAVVKDLID-EGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLA 339
Query: 293 VGTNEKIQLSSLIA 306
G +E +QL SL A
Sbjct: 340 DGADEHLQLISLCA 353
>gi|31563534 replication factor C 2 isoform 1 [Homo sapiens]
Length = 354
Score = 209 bits (533), Expect = 2e-54
Identities = 114/306 (37%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
VEKYRP LN+++ ++D +S ++ F E +P++++ GPPGTGKT++IL A+ L
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
Query: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 120
+M LELNAS+DRGID++R I FA + KG K++ILDEAD+MT AQ ALRR
Sbjct: 99 KDAM-LELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRT 157
Query: 121 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 180
+E +++ TRF L CN KII +QSRC R+ LT ++ RL +V+E+E+V ++DG
Sbjct: 158 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDG 217
Query: 181 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 240
++A++ + GDMR+ALN LQST FG + E V+ P + ++ +N +
Sbjct: 218 LEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDE 277
Query: 241 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 300
AY+ + L L G + DI+ I +++ + ++ +++ G N +Q
Sbjct: 278 AYKILAHLWHL-GYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQ 336
Query: 301 LSSLIA 306
++ L+A
Sbjct: 337 MAGLLA 342
>gi|28882049 replication factor C 2 isoform 2 [Homo sapiens]
Length = 320
Score = 162 bits (411), Expect = 3e-40
Identities = 96/305 (31%), Positives = 159/305 (52%), Gaps = 35/305 (11%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
VEKYRP LN+++ ++D +S ++ F E +P++++ GPPGTGKT++IL A+ L
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALL-GPA 97
Query: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVI 121
+LELNAS+ D+MT AQ ALRR +
Sbjct: 98 LKDAMLELNASN---------------------------------DSMTDGAQQALRRTM 124
Query: 122 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 181
E +++ TRF L CN KII +QSRC R+ LT ++ RL +V+E+E+V ++DG+
Sbjct: 125 EIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGL 184
Query: 182 KALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTA 241
+A++ + GDMR+ALN LQST FG + E V+ P + ++ +N + A
Sbjct: 185 EAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEA 244
Query: 242 YRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQL 301
Y+ + L L G + DI+ I +++ + ++ +++ G N +Q+
Sbjct: 245 YKILAHLWHL-GYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQM 303
Query: 302 SSLIA 306
+ L+A
Sbjct: 304 AGLLA 308
>gi|108773789 replication factor C 3 isoform 2 [Homo sapiens]
Length = 305
Score = 100 bits (248), Expect = 2e-21
Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 28/223 (12%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY---- 57
V+KYRP +L L H++ + ++ + PHLL+YGP G GK + I+ ++LY
Sbjct: 5 VDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGV 64
Query: 58 ---------------KDKEFGSMV----LELNASDDRGID--IIRGPILSFASTR---TI 93
K E ++ LE+N SD D +I+ + + A ++ T
Sbjct: 65 EKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETN 124
Query: 94 FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRF 153
++ FK+V+L E D +T+DAQ+ALRR +EK+ R L CN SK+IP ++SRC R
Sbjct: 125 SQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRV 184
Query: 154 GPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 196
+ E + L V ++E +++ L S ++R+AL
Sbjct: 185 PAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
>gi|4506489 replication factor C 3 isoform 1 [Homo sapiens]
Length = 356
Score = 100 bits (248), Expect = 2e-21
Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 28/223 (12%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY---- 57
V+KYRP +L L H++ + ++ + PHLL+YGP G GK + I+ ++LY
Sbjct: 5 VDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGV 64
Query: 58 ---------------KDKEFGSMV----LELNASDDRGID--IIRGPILSFASTR---TI 93
K E ++ LE+N SD D +I+ + + A ++ T
Sbjct: 65 EKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETN 124
Query: 94 FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRF 153
++ FK+V+L E D +T+DAQ+ALRR +EK+ R L CN SK+IP ++SRC R
Sbjct: 125 SQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRV 184
Query: 154 GPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 196
+ E + L V ++E +++ L S ++R+AL
Sbjct: 185 PAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
>gi|27501458 CTF18, chromosome transmission fidelity factor 18
homolog [Homo sapiens]
Length = 975
Score = 51.2 bits (121), Expect = 1e-06
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 34/193 (17%)
Query: 36 LLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFK 95
LL GPPG GKT+ A+ G V+E+NASDDR ++ R I + ++
Sbjct: 371 LLCGPPGLGKTTLAHVIARHA------GYSVVEMNASDDRSPEVFRTRIEAATQMESVLG 424
Query: 96 KGFK--LVILDEADAMTQDAQNALRRVIEK--------------------------FTEN 127
G K +++DE D A N L ++ +
Sbjct: 425 AGGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMR 484
Query: 128 TRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTL 187
C+ + + + L+ + F P P +V RL+ V + + + AL
Sbjct: 485 PIICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEK 544
Query: 188 SSGDMRRALNILQ 200
+ D+R +N LQ
Sbjct: 545 TDNDIRACINTLQ 557
>gi|32528306 replication factor C large subunit [Homo sapiens]
Length = 1147
Score = 50.1 bits (118), Expect = 3e-06
Identities = 64/267 (23%), Positives = 103/267 (38%), Gaps = 52/267 (19%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFI----------NEDR----------------LPHL 35
V+KY+P +L +I Q S K + +ED+
Sbjct: 587 VDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAKFGKFSGKDDGSSFKAA 646
Query: 36 LLYGPPGTGKTSTI-LACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIF 94
LL GPPG GKT+T L C +E G +ELNASD R ++ + + +I
Sbjct: 647 LLSGPPGVGKTTTASLVC-------QELGYSYVELNASDTRSKSSLKAIVAESLNNTSI- 698
Query: 95 KKGF------------KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIP 142
KGF +I+DE D M + + + ++T+ +IC + P
Sbjct: 699 -KGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHP 757
Query: 143 ALQS---RCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNIL 199
++S C RF E + + + +E + I M ++ ++ D+R+ L+ L
Sbjct: 758 KIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL 817
Query: 200 QSTNMAFGKVTEETVYTCTGHPLKSDI 226
S A K H K DI
Sbjct: 818 -SMWCARSKALTYDQAKADSHRAKKDI 843
>gi|18426902 Werner helicase interacting protein isoform 1 [Homo
sapiens]
Length = 665
Score = 48.1 bits (113), Expect = 1e-05
Identities = 55/232 (23%), Positives = 92/232 (39%), Gaps = 32/232 (13%)
Query: 1 MVEKYRPQTLNDLISHQDIL---STIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY 57
+ + RP TL D + + ++ + + +P L+L+GPPG GKT+ A
Sbjct: 227 LADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIAS--- 283
Query: 58 KDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNAL 117
K+ + L+A++ + D +R I + ++ FK+ ++ +DE + Q+
Sbjct: 284 NSKKHSIRFVTLSATNAKTND-VRDVIKQAQNEKSFFKRK-TILFIDEIHRFNKSQQDTF 341
Query: 118 RRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE--------HVV 169
+E T N ++ AL SRC L E MV L HV+
Sbjct: 342 LPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVL 401
Query: 170 E----------------EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMA 205
+ E + I + + L LS GD R LN LQ +A
Sbjct: 402 DSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLA 453
>gi|19718796 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 45.8 bits (107), Expect = 5e-05
Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 51/250 (20%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPH--------LLLYGPPGTGKTSTILACA 53
V+KY+P+T ++L H+ + ++ ++ L LL+ GPPG GKT+T+ +
Sbjct: 81 VDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKILS 140
Query: 54 KQ--LYKDKEFGSMVLELNASDDRGIDIIRGP--ILSFASTRTIFKKGF----------- 98
K+ + + ++ + D +G+ + + S +FK+
Sbjct: 141 KEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQM 200
Query: 99 ---------KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLIC---------NYLSKI 140
K++++++ + L V+ K+ R LI N +
Sbjct: 201 LGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQRLL 260
Query: 141 IP-ALQSRC--TRFRFGPLTPELMVPRLEHVVEEE------KVDI-SEDGMKALVTLSSG 190
P +Q C + F P+ P +M+ L +V E K+ + + ++ L SG
Sbjct: 261 FPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSG 320
Query: 191 DMRRALNILQ 200
D+R A+N LQ
Sbjct: 321 DIRSAINSLQ 330
>gi|19718794 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 45.8 bits (107), Expect = 5e-05
Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 51/250 (20%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPH--------LLLYGPPGTGKTSTILACA 53
V+KY+P+T ++L H+ + ++ ++ L LL+ GPPG GKT+T+ +
Sbjct: 81 VDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKILS 140
Query: 54 KQ--LYKDKEFGSMVLELNASDDRGIDIIRGP--ILSFASTRTIFKKGF----------- 98
K+ + + ++ + D +G+ + + S +FK+
Sbjct: 141 KEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQM 200
Query: 99 ---------KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLIC---------NYLSKI 140
K++++++ + L V+ K+ R LI N +
Sbjct: 201 LGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQRLL 260
Query: 141 IP-ALQSRC--TRFRFGPLTPELMVPRLEHVVEEE------KVDI-SEDGMKALVTLSSG 190
P +Q C + F P+ P +M+ L +V E K+ + + ++ L SG
Sbjct: 261 FPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSG 320
Query: 191 DMRRALNILQ 200
D+R A+N LQ
Sbjct: 321 DIRSAINSLQ 330
>gi|19718792 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 45.8 bits (107), Expect = 5e-05
Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 51/250 (20%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPH--------LLLYGPPGTGKTSTILACA 53
V+KY+P+T ++L H+ + ++ ++ L LL+ GPPG GKT+T+ +
Sbjct: 81 VDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKILS 140
Query: 54 KQ--LYKDKEFGSMVLELNASDDRGIDIIRGP--ILSFASTRTIFKKGF----------- 98
K+ + + ++ + D +G+ + + S +FK+
Sbjct: 141 KEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQM 200
Query: 99 ---------KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLIC---------NYLSKI 140
K++++++ + L V+ K+ R LI N +
Sbjct: 201 LGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQRLL 260
Query: 141 IP-ALQSRC--TRFRFGPLTPELMVPRLEHVVEEE------KVDI-SEDGMKALVTLSSG 190
P +Q C + F P+ P +M+ L +V E K+ + + ++ L SG
Sbjct: 261 FPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSG 320
Query: 191 DMRRALNILQ 200
D+R A+N LQ
Sbjct: 321 DIRSAINSLQ 330
>gi|19718784 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 45.8 bits (107), Expect = 5e-05
Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 51/250 (20%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPH--------LLLYGPPGTGKTSTILACA 53
V+KY+P+T ++L H+ + ++ ++ L LL+ GPPG GKT+T+ +
Sbjct: 81 VDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKILS 140
Query: 54 KQ--LYKDKEFGSMVLELNASDDRGIDIIRGP--ILSFASTRTIFKKGF----------- 98
K+ + + ++ + D +G+ + + S +FK+
Sbjct: 141 KEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQM 200
Query: 99 ---------KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLIC---------NYLSKI 140
K++++++ + L V+ K+ R LI N +
Sbjct: 201 LGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQRLL 260
Query: 141 IP-ALQSRC--TRFRFGPLTPELMVPRLEHVVEEE------KVDI-SEDGMKALVTLSSG 190
P +Q C + F P+ P +M+ L +V E K+ + + ++ L SG
Sbjct: 261 FPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSG 320
Query: 191 DMRRALNILQ 200
D+R A+N LQ
Sbjct: 321 DIRSAINSLQ 330
>gi|4506383 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 45.8 bits (107), Expect = 5e-05
Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 51/250 (20%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPH--------LLLYGPPGTGKTSTILACA 53
V+KY+P+T ++L H+ + ++ ++ L LL+ GPPG GKT+T+ +
Sbjct: 81 VDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKILS 140
Query: 54 KQ--LYKDKEFGSMVLELNASDDRGIDIIRGP--ILSFASTRTIFKKGF----------- 98
K+ + + ++ + D +G+ + + S +FK+
Sbjct: 141 KEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQM 200
Query: 99 ---------KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLIC---------NYLSKI 140
K++++++ + L V+ K+ R LI N +
Sbjct: 201 LGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQRLL 260
Query: 141 IP-ALQSRC--TRFRFGPLTPELMVPRLEHVVEEE------KVDI-SEDGMKALVTLSSG 190
P +Q C + F P+ P +M+ L +V E K+ + + ++ L SG
Sbjct: 261 FPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSG 320
Query: 191 DMRRALNILQ 200
D+R A+N LQ
Sbjct: 321 DIRSAINSLQ 330
>gi|19718786 RAD17 homolog isoform 2 [Homo sapiens]
Length = 681
Score = 45.8 bits (107), Expect = 5e-05
Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 51/250 (20%)
Query: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPH--------LLLYGPPGTGKTSTILACA 53
V+KY+P+T ++L H+ + ++ ++ L LL+ GPPG GKT+T+ +
Sbjct: 92 VDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKILS 151
Query: 54 KQ--LYKDKEFGSMVLELNASDDRGIDIIRGP--ILSFASTRTIFKKGF----------- 98
K+ + + ++ + D +G+ + + S +FK+
Sbjct: 152 KEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQM 211
Query: 99 ---------KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLIC---------NYLSKI 140
K++++++ + L V+ K+ R LI N +
Sbjct: 212 LGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQRLL 271
Query: 141 IP-ALQSRC--TRFRFGPLTPELMVPRLEHVVEEE------KVDI-SEDGMKALVTLSSG 190
P +Q C + F P+ P +M+ L +V E K+ + + ++ L SG
Sbjct: 272 FPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSG 331
Query: 191 DMRRALNILQ 200
D+R A+N LQ
Sbjct: 332 DIRSAINSLQ 341
>gi|18426904 Werner helicase interacting protein isoform 2 [Homo
sapiens]
Length = 640
Score = 42.7 bits (99), Expect = 4e-04
Identities = 51/216 (23%), Positives = 90/216 (41%), Gaps = 25/216 (11%)
Query: 1 MVEKYRPQTLNDLISHQDIL---STIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY 57
+ + RP TL D + + ++ + + +P L+L+GPPG GKT+ A
Sbjct: 227 LADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIAS--- 283
Query: 58 KDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ-NA 116
K+ + L+A++ + D +R I + ++ FK+ ++ +DE + Q NA
Sbjct: 284 NSKKHSIRFVTLSATNAKTND-VRDVIKQAQNEKSFFKRK-TILFIDEIHRFNKSQQVNA 341
Query: 117 --LRR----VIEKFTENTRFCLICNYLSKI-IPALQSRCTRFRFGPLTPELMVPRLEHVV 169
L R V+EK ++ ++ + I L S P + +
Sbjct: 342 ALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSS---------RPTDPLSHSSNSS 392
Query: 170 EEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMA 205
E + I + + L LS GD R LN LQ +A
Sbjct: 393 SEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLA 428
>gi|4502703 cell division cycle 6 protein [Homo sapiens]
Length = 560
Score = 37.4 bits (85), Expect = 0.018
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 44/219 (20%)
Query: 20 LSTIQKFINED----RLPHLLLYGPPGTGKTSTILACAKQLYKD-KEFGSMVL------- 67
+ I+ F+ E + L L G PGTGKT+ + + L K+ K F +++L
Sbjct: 179 MDVIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLKKELKGFKTIMLNCMSLRT 238
Query: 68 -------------ELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 114
+ S G D++R T K +++LDE D + Q
Sbjct: 239 AQAVFPAIAQEICQEEVSRPAGKDMMR----KLEKHMTAEKGPMIVLVLDEMDQLDSKGQ 294
Query: 115 NALRRVIE-KFTENTRFCLI-----CNYLSKIIPALQSR--C--TRFRFGPLTPELMV-- 162
+ L + E + N+ LI + +I+P LQ+R C F P T +V
Sbjct: 295 DVLYTLFEWPWLSNSHLVLIGIANTLDLTDRILPRLQAREKCKPQLLNFPPYTRNQIVTI 354
Query: 163 --PRLEHVVEEEKVDISEDGMKA-LVTLSSGDMRRALNI 198
RL V ++ +D + A V+ SGD+R+AL++
Sbjct: 355 LQDRLNQVSRDQVLDNAAVQFCARKVSAVSGDVRKALDV 393
>gi|21361144 proteasome 26S ATPase subunit 3 [Homo sapiens]
Length = 439
Score = 37.0 bits (84), Expect = 0.023
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 35 LLLYGPPGTGKTSTILACAKQLYKD--KEFGSMVLELNASDDRGIDIIRGPILSFASTRT 92
+L+YGPPGTGKT ACA Q K G ++++ D G ++R +FA +
Sbjct: 223 VLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD--GAKLVRD---AFALAK- 276
Query: 93 IFKKGFKLVILDEADAM 109
+K ++ +DE DA+
Sbjct: 277 --EKAPSIIFIDELDAI 291
>gi|194018490 ATPase family, AAA domain containing 3C [Homo sapiens]
Length = 411
Score = 37.0 bits (84), Expect = 0.023
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 34 HLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI 93
H+LLYGPPGTGK T+ A L+ ++ M A R + +A+T
Sbjct: 172 HILLYGPPGTGK--TLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTS-- 227
Query: 94 FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCL 132
++G L+ +DEADA + +R EK +E+ R L
Sbjct: 228 -RRGL-LLFVDEADAFLR------KRATEKISEDLRATL 258
>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
Length = 1844
Score = 36.2 bits (82), Expect = 0.040
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 35 LLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIF 94
+L+ GP G GKT+ + ACA++L G + E+NAS R I + + +
Sbjct: 1128 VLITGPTGVGKTAAVYACAQEL------GFKIFEVNASSQRSGRQILSQLKEATQSHQVD 1181
Query: 95 KKG 97
K+G
Sbjct: 1182 KQG 1184
>gi|119964730 BCS1-like [Homo sapiens]
Length = 419
Score = 35.4 bits (80), Expect = 0.068
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 32/119 (26%)
Query: 6 RPQTLNDLISHQD----ILSTIQKFINEDR------LPH---LLLYGPPGTGKTSTILAC 52
R + LN ++ Q I+ +Q+FI+ + +P+ LLYGPPG GK+S I A
Sbjct: 184 RRRPLNSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITAL 243
Query: 53 AKQLYKDKEFGSMVLEL---NASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADA 108
A +L E +L L + SDDR +LS A ++ LV+L++ DA
Sbjct: 244 AGEL----EHSICLLSLTDSSLSDDR-----LNHLLSVAPQQS-------LVLLEDVDA 286
>gi|4757852 BCS1-like [Homo sapiens]
Length = 419
Score = 35.4 bits (80), Expect = 0.068
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 32/119 (26%)
Query: 6 RPQTLNDLISHQD----ILSTIQKFINEDR------LPH---LLLYGPPGTGKTSTILAC 52
R + LN ++ Q I+ +Q+FI+ + +P+ LLYGPPG GK+S I A
Sbjct: 184 RRRPLNSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITAL 243
Query: 53 AKQLYKDKEFGSMVLEL---NASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADA 108
A +L E +L L + SDDR +LS A ++ LV+L++ DA
Sbjct: 244 AGEL----EHSICLLSLTDSSLSDDR-----LNHLLSVAPQQS-------LVLLEDVDA 286
>gi|75677353 AAA-ATPase TOB3 [Homo sapiens]
Length = 648
Score = 35.0 bits (79), Expect = 0.088
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 34 HLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI 93
H+LLYGPPGTGK T+ A L+ ++ M A R + +A+T
Sbjct: 347 HILLYGPPGTGK--TLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTS-- 402
Query: 94 FKKGFKLVILDEADAM-----TQDAQNALRRVIEKF 124
++G L+ +DEADA T++ LR + F
Sbjct: 403 -RRGL-LLFMDEADAFLRKRATEEISKDLRATLNAF 436
>gi|31377667 peroxisomal LON protease-like [Homo sapiens]
Length = 852
Score = 33.9 bits (76), Expect = 0.20
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 23/171 (13%)
Query: 23 IQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVL--ELNASDDRG---- 76
+++ N + P L GPPG GKTS + AK L +EF + L + SD RG
Sbjct: 359 VRQLKNNLKGPILCFVGPPGVGKTSVGRSVAKTL--GREFHRIALGGVCDQSDIRGHRRT 416
Query: 77 -IDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQN----ALRRVIE-----KFTE 126
+ + G I++ T + F +LDE D + + Q AL V++ FT+
Sbjct: 417 YVGSMPGRIINGLKTVGVNNPVF---LLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTD 473
Query: 127 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDIS 177
+ + + LS+++ + T L + + ++ +EEK++I+
Sbjct: 474 H--YLNVAFDLSQVLFIATANTTATIPAALLDRMEIIQVPGYTQEEKIEIA 522
>gi|42476028 ATPase family, AAA domain containing 3A [Homo sapiens]
Length = 634
Score = 33.9 bits (76), Expect = 0.20
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 28 NEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSF 87
N ++L+YGPPGTGK T+ A L+ ++ M A R + +
Sbjct: 389 NRSLYRNILMYGPPGTGK--TLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDW 446
Query: 88 ASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCL 132
A+T ++G L+ +DEADA + +R EK +E+ R L
Sbjct: 447 ANTS---RRGL-LLFVDEADAFLR------KRATEKISEDLRATL 481
>gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens]
Length = 753
Score = 33.5 bits (75), Expect = 0.26
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 35 LLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNA---SDDRGIDIIRGPILSFASTR 91
+LL GPPG GKT + A A +E G+ +L ++A R + F R
Sbjct: 237 VLLAGPPGVGKTQLVRAVA------REAGAELLAVSAPALQGSRPGETEENVRRVFQRAR 290
Query: 92 TIFKKGFKLVILDEADAM 109
+ +G L+ LDE DA+
Sbjct: 291 ELASRGPSLLFLDEMDAL 308
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,801,330
Number of Sequences: 37866
Number of extensions: 433691
Number of successful extensions: 1293
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 96
length of query: 319
length of database: 18,247,518
effective HSP length: 102
effective length of query: 217
effective length of database: 14,385,186
effective search space: 3121585362
effective search space used: 3121585362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.