Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 113415024

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113415024 PREDICTED: similar to destrin [Homo sapiens]
         (199 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113415024 PREDICTED: similar to destrin [Homo sapiens]             414   e-116
gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing...   368   e-102
gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing...   367   e-102
gi|5802966 destrin isoform a [Homo sapiens]                           244   3e-65
gi|58530848 destrin isoform b [Homo sapiens]                          219   9e-58
gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]                      165   2e-41
gi|14719392 cofilin 2 [Homo sapiens]                                  161   3e-40
gi|33946278 cofilin 2 [Homo sapiens]                                  161   3e-40
gi|239754918 PREDICTED: similar to destrin [Homo sapiens]             159   1e-39
gi|239749458 PREDICTED: similar to destrin [Homo sapiens]             159   1e-39
gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo ...   159   1e-39
gi|6005846 twinfilin-like protein [Homo sapiens]                       34   0.072
gi|40068475 twinfilin 1 [Homo sapiens]                                 33   0.12 
gi|113205089 zinc finger, MYM domain containing 1 [Homo sapiens]       32   0.47 
gi|148596992 heart alpha-kinase [Homo sapiens]                         29   2.3  
gi|122937227 U2-associated SR140 protein [Homo sapiens]                29   2.3  
gi|4505175 KIT ligand isoform b precursor [Homo sapiens]               28   5.1  
gi|40807477 retinoic acid induced 1 [Homo sapiens]                     28   6.7  
gi|148664201 cytoskeleton associated protein 2 isoform 2 [Homo s...    27   8.8  
gi|148664244 cytoskeleton associated protein 2 isoform 1 [Homo s...    27   8.8  

>gi|113415024 PREDICTED: similar to destrin [Homo sapiens]
          Length = 199

 Score =  414 bits (1065), Expect = e-116
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MRHFGHEKMREGGSGQREESGKDSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKV 60
           MRHFGHEKMREGGSGQREESGKDSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKV
Sbjct: 1   MRHFGHEKMREGGSGQREESGKDSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKV 60

Query: 61  HKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVSITGPFKHFVGMLPEKDC 120
           HKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVSITGPFKHFVGMLPEKDC
Sbjct: 61  HKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVSITGPFKHFVGMLPEKDC 120

Query: 121 CYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWA 180
           CYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWA
Sbjct: 121 CYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWA 180

Query: 181 CIAEKLDGYLIAAFEGCSV 199
           CIAEKLDGYLIAAFEGCSV
Sbjct: 181 CIAEKLDGYLIAAFEGCSV 199


>gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing
           factor) [Homo sapiens]
          Length = 252

 Score =  368 bits (945), Expect = e-102
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 23  DSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSA 82
           DSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSA
Sbjct: 76  DSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSA 135

Query: 83  DKKCIIVEEGKEISAGDIGVSITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCL 142
           DKKCIIVEEGKEISAGDIGVSITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCL
Sbjct: 136 DKKCIIVEEGKEISAGDIGVSITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCL 195

Query: 143 FLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLDGYLIAAFEGCSV 199
           FLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLDGYLIAAFEGCSV
Sbjct: 196 FLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLDGYLIAAFEGCSV 252


>gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing
           factor) [Homo sapiens]
          Length = 252

 Score =  367 bits (942), Expect = e-102
 Identities = 176/177 (99%), Positives = 177/177 (100%)

Query: 23  DSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSA 82
           DSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSA
Sbjct: 76  DSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSA 135

Query: 83  DKKCIIVEEGKEISAGDIGVSITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCL 142
           DKKCIIVEEGKEISAGDIGV+ITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCL
Sbjct: 136 DKKCIIVEEGKEISAGDIGVTITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCL 195

Query: 143 FLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLDGYLIAAFEGCSV 199
           FLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLDGYLIAAFEGCSV
Sbjct: 196 FLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLDGYLIAAFEGCSV 252


>gi|5802966 destrin isoform a [Homo sapiens]
          Length = 165

 Score =  244 bits (624), Expect = 3e-65
 Identities = 128/164 (78%), Positives = 134/164 (81%), Gaps = 8/164 (4%)

Query: 43  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102
           SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCLSADKKCIIVEEGKEI  GD+GV
Sbjct: 3   SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGV 62

Query: 103 SITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 162
           +IT PFKHFVGMLPEKDC YALYDASFETK+S R   +  FLWAPEL PLKSKMI+ S K
Sbjct: 63  TITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSK 121

Query: 163 DAIKKKF-------QANGPEDLNWACIAEKLDGYLIAAFEGCSV 199
           DAIKKKF       QANGPEDLN ACIAEKL G LI AFEGC V
Sbjct: 122 DAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSLIVAFEGCPV 165


>gi|58530848 destrin isoform b [Homo sapiens]
          Length = 148

 Score =  219 bits (559), Expect = 9e-58
 Identities = 115/149 (77%), Positives = 121/149 (81%), Gaps = 8/149 (5%)

Query: 58  IKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVSITGPFKHFVGMLPE 117
           +KV KCST EEIKKRKK VIFCLSADKKCIIVEEGKEI  GD+GV+IT PFKHFVGMLPE
Sbjct: 1   MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60

Query: 118 KDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKF-------Q 170
           KDC YALYDASFETK+S R   +  FLWAPEL PLKSKMI+ S KDAIKKKF       Q
Sbjct: 61  KDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQ 119

Query: 171 ANGPEDLNWACIAEKLDGYLIAAFEGCSV 199
           ANGPEDLN ACIAEKL G LI AFEGC V
Sbjct: 120 ANGPEDLNRACIAEKLGGSLIVAFEGCPV 148


>gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]
          Length = 166

 Score =  165 bits (418), Expect = 2e-41
 Identities = 91/162 (56%), Positives = 113/162 (69%), Gaps = 9/162 (5%)

Query: 43  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102
           SGV V+D V  +F D+KV K ST EE+KKRKK V+FCLS DKK II+EEGKEI  GD+G 
Sbjct: 3   SGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQ 62

Query: 103 SITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 162
           ++  P+  FV MLP+KDC YALYDA++ETK+S +   V +F WAPE  PLKSKMI+ S K
Sbjct: 63  TVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIF-WAPESAPLKSKMIYASSK 121

Query: 163 DAIKKK-------FQANGPEDLNWAC-IAEKLDGYLIAAFEG 196
           DAIKKK        QAN  E++   C +AEKL G  + + EG
Sbjct: 122 DAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEG 163


>gi|14719392 cofilin 2 [Homo sapiens]
          Length = 166

 Score =  161 bits (408), Expect = 3e-40
 Identities = 89/162 (54%), Positives = 112/162 (69%), Gaps = 9/162 (5%)

Query: 43  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102
           SGV V DEV  +F D+KV K ST EEIKKRKK V+FCLS DK+ IIVEE K+I  GDIG 
Sbjct: 3   SGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGD 62

Query: 103 SITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 162
           ++  P+  FV +LP  DC YALYDA++ETK+S +   V +F WAPE  PLKSKMI+ S K
Sbjct: 63  TVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIF-WAPESAPLKSKMIYASSK 121

Query: 163 DAIKKKF-------QANGPEDL-NWACIAEKLDGYLIAAFEG 196
           DAIKKKF       Q NG +D+ + + + EKL G ++ + EG
Sbjct: 122 DAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNVVVSLEG 163


>gi|33946278 cofilin 2 [Homo sapiens]
          Length = 166

 Score =  161 bits (408), Expect = 3e-40
 Identities = 89/162 (54%), Positives = 112/162 (69%), Gaps = 9/162 (5%)

Query: 43  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102
           SGV V DEV  +F D+KV K ST EEIKKRKK V+FCLS DK+ IIVEE K+I  GDIG 
Sbjct: 3   SGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGD 62

Query: 103 SITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 162
           ++  P+  FV +LP  DC YALYDA++ETK+S +   V +F WAPE  PLKSKMI+ S K
Sbjct: 63  TVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIF-WAPESAPLKSKMIYASSK 121

Query: 163 DAIKKKF-------QANGPEDL-NWACIAEKLDGYLIAAFEG 196
           DAIKKKF       Q NG +D+ + + + EKL G ++ + EG
Sbjct: 122 DAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNVVVSLEG 163


>gi|239754918 PREDICTED: similar to destrin [Homo sapiens]
          Length = 103

 Score =  159 bits (402), Expect = 1e-39
 Identities = 77/92 (83%), Positives = 82/92 (89%)

Query: 43  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102
           SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCL AD+KCIIVEEGKEI  GD+GV
Sbjct: 3   SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGV 62

Query: 103 SITGPFKHFVGMLPEKDCCYALYDASFETKKS 134
           +ITGPFKHFVGMLPEKDC  ALYDASFETK+S
Sbjct: 63  TITGPFKHFVGMLPEKDCRCALYDASFETKES 94


>gi|239749458 PREDICTED: similar to destrin [Homo sapiens]
          Length = 103

 Score =  159 bits (402), Expect = 1e-39
 Identities = 77/92 (83%), Positives = 82/92 (89%)

Query: 43  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102
           SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCL AD+KCIIVEEGKEI  GD+GV
Sbjct: 3   SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGV 62

Query: 103 SITGPFKHFVGMLPEKDCCYALYDASFETKKS 134
           +ITGPFKHFVGMLPEKDC  ALYDASFETK+S
Sbjct: 63  TITGPFKHFVGMLPEKDCRCALYDASFETKES 94


>gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo
           sapiens]
          Length = 103

 Score =  159 bits (402), Expect = 1e-39
 Identities = 77/92 (83%), Positives = 82/92 (89%)

Query: 43  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102
           SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCL AD+KCIIVEEGKEI  GD+GV
Sbjct: 3   SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGV 62

Query: 103 SITGPFKHFVGMLPEKDCCYALYDASFETKKS 134
           +ITGPFKHFVGMLPEKDC  ALYDASFETK+S
Sbjct: 63  TITGPFKHFVGMLPEKDCRCALYDASFETKES 94


>gi|6005846 twinfilin-like protein [Homo sapiens]
          Length = 349

 Score = 34.3 bits (77), Expect = 0.072
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 114 MLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANG 173
           +L  +  CY LY    +  +    LF+    W+P+  P++ KM++ + +  +KK+F    
Sbjct: 60  LLDAQQPCYLLYRLDSQNAQGFEWLFLA---WSPDNSPVRLKMLYAATRATVKKEFGGGH 116

Query: 174 PEDLNWACIAEKL 186
            +D  +  + + L
Sbjct: 117 IKDELFGTVKDDL 129


>gi|40068475 twinfilin 1 [Homo sapiens]
          Length = 384

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 114 MLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANG 173
           +L +K  CY L+    +  +    +F+    W+P+   ++ KM++ + +  +KK+F    
Sbjct: 94  LLEDKQPCYILFRLDSQNAQGYEWIFIA---WSPDHSHVRQKMLYAATRATLKKEFGGGH 150

Query: 174 PEDLNWACIAE--KLDGY 189
            +D  +  + E   L GY
Sbjct: 151 IKDEVFGTVKEDVSLHGY 168


>gi|113205089 zinc finger, MYM domain containing 1 [Homo sapiens]
          Length = 1142

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 12/54 (22%)

Query: 45  VQVADEVCHIFCDIKVHK------------CSTSEEIKKRKKTVIFCLSADKKC 86
           ++++DE+CH  C  KV K            C+  E ++  KK V FC S    C
Sbjct: 431 MKISDELCHPKCTSKVQKVKGKSRSIKKSCCADFECLENSKKDVAFCYSCQLFC 484


>gi|148596992 heart alpha-kinase [Homo sapiens]
          Length = 2170

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 7    EKMREGGSGQREESGKDSV----PTSGLP-CVPVTVAAKTDSGVQVADEVCHIFCDIKVH 61
            ++  +G  G+ E+S KD      PTS L  C+P+   A    GV   +    I      H
Sbjct: 1514 QESSDGSLGEAEQSKKDKAELISPTSPLSSCLPIMTHASL--GVDTHNSTGQI------H 1565

Query: 62   KCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEI 95
                ++ ++ RK+  +F +S  +  I  E GK +
Sbjct: 1566 DVPENDIVEPRKRQYVFPVSQKRGTIENERGKPL 1599


>gi|122937227 U2-associated SR140 protein [Homo sapiens]
          Length = 1029

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 145 WA--PELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLDGYLIAAFEGCSV 199
           WA  PE   +K + IF    + I++K   + P+DL+ A I E+LDG  +   +G  +
Sbjct: 660 WAIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPI 716


>gi|4505175 KIT ligand isoform b precursor [Homo sapiens]
          Length = 273

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 19/142 (13%)

Query: 43  SGVQVADEVCHIFCD-IKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIG 101
           S   + D++ +I  D ++  K ++S+++KK  K      S + +    EE   I    I 
Sbjct: 96  SNYSIIDKLVNIVDDLVECVKENSSKDLKKSFK------SPEPRLFTPEEFFRIFNRSID 149

Query: 102 VSITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSC 161
                 FK FV      DC   +  ++   +K  RV     F+    LPP+ +  +    
Sbjct: 150 A-----FKDFVVASETSDC---VVSSTLSPEKDSRVSVTKPFM----LPPVAASSLRNDS 197

Query: 162 KDAIKKKFQANGPEDLNWACIA 183
             + +K     G   L+WA +A
Sbjct: 198 SSSNRKAKNPPGDSSLHWAAMA 219


>gi|40807477 retinoic acid induced 1 [Homo sapiens]
          Length = 1906

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 5    GHEKMREGGSGQR---EESGKDSVPTSGLPCVPVTVAAK 40
            G  +   GG G++   EE G  S P  G PC P T A K
Sbjct: 1486 GASEDNSGGGGKKPKMEELGLASQPPEGRPCQPQTRAQK 1524


>gi|148664201 cytoskeleton associated protein 2 isoform 2 [Homo
           sapiens]
          Length = 683

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 43  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102
           +G Q  +E+ H   DI   K      + +         + +K C   EE KE+S  D GV
Sbjct: 490 AGAQPIEEMRHTIVDILTMKSQEKANLGE---------NMEKSCASKEEVKEVSIEDTGV 540

Query: 103 SI 104
            +
Sbjct: 541 DV 542


>gi|148664244 cytoskeleton associated protein 2 isoform 1 [Homo
           sapiens]
          Length = 682

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 43  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102
           +G Q  +E+ H   DI   K      + +         + +K C   EE KE+S  D GV
Sbjct: 489 AGAQPIEEMRHTIVDILTMKSQEKANLGE---------NMEKSCASKEEVKEVSIEDTGV 539

Query: 103 SI 104
            +
Sbjct: 540 DV 541


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,326,915
Number of Sequences: 37866
Number of extensions: 358381
Number of successful extensions: 779
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 20
length of query: 199
length of database: 18,247,518
effective HSP length: 97
effective length of query: 102
effective length of database: 14,574,516
effective search space: 1486600632
effective search space used: 1486600632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press