Guide to the Human Genome
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Name: PORCN Sequence: fasta or formatted (456aa) NCBI GI: 45439331
Description:

porcupine isoform B

Referenced in:

Additional Enzymes and Related Sequences
Wnt Signals

Other entries for this name:
alt prot [450aa] porcupine isoform A
alt prot [455aa] porcupine isoform C
alt prot [461aa] porcupine isoform D
alt prot [379aa] porcupine isoform E
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         36           2
 C cysteine            2.6         12           1
 D aspartate           2.6         12           2
 E glutamate           3.3         15           2
 F phenylalanine       6.8         31           2
 G glycine             6.6         30           2
 H histidine           3.9         18           1
 I isoleucine          2.9         13           1
 K lysine              2.9         13           2
 L leucine            16.7         76           3
 M methionine          2.6         12           1
 N asparagine          2.0          9           2
 P proline             3.1         14           2
 Q glutamine           3.1         14           2
 R arginine            5.3         24           1
 S serine              7.5         34           2
 T threonine           4.6         21           2
 V valine              8.6         39           2
 W tryptophan          3.1         14           1
 Y tyrosine            4.2         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   porcupine isoform B 
PORCN                 0.993   porcupine isoform D 
PORCN                 0.982   porcupine isoform C 
PORCN                 0.978   porcupine isoform A 
PORCN                 0.818   porcupine isoform E 
MBOAT1                0.038   membrane bound O-acyltransferase domain containing ...
LPCAT3                0.038   lysophosphatidylcholine acyltransferase 3 
MBOAT2                0.027   O-acyltransferase (membrane bound) domain containing...
MBOAT7                0.018   membrane bound O-acyltransferase domain containing ...
MBOAT7                0.018   membrane bound O-acyltransferase domain containing ...
MBOAT7                0.018   membrane bound O-acyltransferase domain containing ...
MBOAT7                0.013   membrane bound O-acyltransferase domain containing ...
DENND4B               0.010   DENN/MADD domain containing 4B 
ACER1                 0.008   alkaline ceramidase 1 
OR51I2                0.008   olfactory receptor, family 51, subfamily I, member 2...
VN1R1                 0.007   vomeronasal 1 receptor 1 
ABCC3                 0.005   ATP-binding cassette, sub-family C, member 3 isofor...
ABCC3                 0.005   ATP-binding cassette, sub-family C, member 3 isoform ...
GPR4                  0.005   G protein-coupled receptor 4 
SOAT2                 0.005   acyl-CoA:cholesterol acyltransferase 2 
TM9SF4                0.004   transmembrane 9 superfamily protein member 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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