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Search of human proteins with 194097484
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194097484 ELMO/CED-12 domain containing 1 isoform 2 [Homo
sapiens]
(326 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194097484 ELMO/CED-12 domain containing 1 isoform 2 [Homo sap... 671 0.0
gi|112181294 ELMO/CED-12 domain containing 1 isoform 1 [Homo sap... 664 0.0
gi|24308456 ELMO/CED-12 domain containing 2 [Homo sapiens] 306 1e-83
gi|203098650 ELMO/CED-12 domain containing 3 isoform b [Homo sap... 52 7e-07
gi|203098539 ELMO/CED-12 domain containing 3 isoform b [Homo sap... 52 7e-07
gi|203098474 ELMO/CED-12 domain containing 3 isoform b [Homo sap... 52 7e-07
gi|21362032 ELMO/CED-12 domain containing 3 isoform a [Homo sapi... 48 1e-05
gi|5031579 A-kinase anchor protein 8 [Homo sapiens] 30 3.8
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s... 29 5.0
gi|22749515 coiled-coil domain containing 110 isoform a [Homo sa... 29 5.0
gi|24307969 cytoplasmic FMR1 interacting protein 1 isoform a [Ho... 28 8.5
gi|221316624 dystonin isoform 4 [Homo sapiens] 28 8.5
gi|221316622 dystonin isoform 3 [Homo sapiens] 28 8.5
gi|221316618 dystonin isoform 2 [Homo sapiens] 28 8.5
gi|34577047 dystonin isoform 1 [Homo sapiens] 28 8.5
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 28 8.5
gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens] 28 8.5
gi|62868213 golgi associated PDZ and coiled-coil motif containin... 28 8.5
>gi|194097484 ELMO/CED-12 domain containing 1 isoform 2 [Homo
sapiens]
Length = 326
Score = 671 bits (1731), Expect = 0.0
Identities = 326/326 (100%), Positives = 326/326 (100%)
Query: 1 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD 60
MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
Sbjct: 1 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD 60
Query: 61 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE 120
SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
Sbjct: 61 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE 120
Query: 121 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG 180
KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
Sbjct: 121 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG 180
Query: 181 LYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAY 240
LYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAY
Sbjct: 181 LYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAY 240
Query: 241 NLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRK 300
NLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRK
Sbjct: 241 NLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRK 300
Query: 301 RIIKQLQNPDMALCPHFAASEGLINM 326
RIIKQLQNPDMALCPHFAASEGLINM
Sbjct: 301 RIIKQLQNPDMALCPHFAASEGLINM 326
>gi|112181294 ELMO/CED-12 domain containing 1 isoform 1 [Homo
sapiens]
Length = 334
Score = 664 bits (1712), Expect = 0.0
Identities = 326/334 (97%), Positives = 326/334 (97%), Gaps = 8/334 (2%)
Query: 1 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD 60
MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
Sbjct: 1 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD 60
Query: 61 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE 120
SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
Sbjct: 61 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE 120
Query: 121 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG 180
KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
Sbjct: 121 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG 180
Query: 181 LYNLQYFAERDATAAQQVLSDSLHPKC--------SKFSKAEWEKKRMDKAIGYSFAIVG 232
LYNLQYFAERDATAAQQVLSDSLHPKC SKFSKAEWEKKRMDKAIGYSFAIVG
Sbjct: 181 LYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVG 240
Query: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN 292
INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN
Sbjct: 241 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN 300
Query: 293 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM 326
RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM
Sbjct: 301 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM 334
>gi|24308456 ELMO/CED-12 domain containing 2 [Homo sapiens]
Length = 293
Score = 306 bits (785), Expect = 1e-83
Identities = 156/307 (50%), Positives = 207/307 (67%), Gaps = 18/307 (5%)
Query: 7 MLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLL 66
M I + +FY F +K+++R++TG+CELQRI ++T GA RT +IE SL SK+K+L
Sbjct: 1 MFISLWEFFYGHFFRFWMKWLLRQMTGKCELQRI-FDTYVGAQRTHRIENSLTYSKNKVL 59
Query: 67 QTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREA 126
Q + V ++K ++DIM+ K INP+ + I ++ CLLQI GY+ L DVE +R+
Sbjct: 60 QKATHVVQSEVDKYVDDIMKEKNINPEKDASFKICMKMCLLQITGYKQLYLDVESVRKRP 119
Query: 127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQY 186
YDSDN QHEE+L+KLW L P L +RISKQW EIGFQGDDPKTDFRGMG+LGL NL Y
Sbjct: 120 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVY 179
Query: 187 FAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSG 246
F+E + A Q+LS S HPK +GYS+AIVGIN+T++AY+LL S
Sbjct: 180 FSENYTSEAHQILSRSNHPK-----------------LGYSYAIVGINLTEMAYSLLKSE 222
Query: 247 ALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQL 306
ALK H YN+ P PT+ HF Q +CYL++EF KFW EE+P IM FN REKF ++I L
Sbjct: 223 ALKFHLYNLVPGIPTMEHFHQFYCYLVYEFDKFWFEEEPESIMYFNLYREKFHEKIKGLL 282
Query: 307 QNPDMAL 313
+ ++AL
Sbjct: 283 LDCNVAL 289
>gi|203098650 ELMO/CED-12 domain containing 3 isoform b [Homo
sapiens]
Length = 381
Score = 52.0 bits (123), Expect = 7e-07
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 22/185 (11%)
Query: 128 DSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYF 187
DS +P H +L ++K L + + W ++GFQG +P TD RG G L L +L Y
Sbjct: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224
Query: 188 AERDAT--AAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVS 245
T AQ++ S H + F ++ +NIT +A L
Sbjct: 225 VMDSKTLPMAQEIFRLSRH-----------------HIQQFPFCLMSVNITHIAIQALRE 267
Query: 246 GALKTHFYNIAPEAPTL-SHFQQTFCYLMHEF--HKFWIEEDPMDIMEFNRVREKFRKRI 302
L P + S + TF +L H + + I + + E + +K +R+
Sbjct: 268 ECLSRECNRQQKVIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKELEVLAKKSPRRL 327
Query: 303 IKQLQ 307
+K L+
Sbjct: 328 LKTLE 332
>gi|203098539 ELMO/CED-12 domain containing 3 isoform b [Homo
sapiens]
Length = 381
Score = 52.0 bits (123), Expect = 7e-07
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 22/185 (11%)
Query: 128 DSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYF 187
DS +P H +L ++K L + + W ++GFQG +P TD RG G L L +L Y
Sbjct: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224
Query: 188 AERDAT--AAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVS 245
T AQ++ S H + F ++ +NIT +A L
Sbjct: 225 VMDSKTLPMAQEIFRLSRH-----------------HIQQFPFCLMSVNITHIAIQALRE 267
Query: 246 GALKTHFYNIAPEAPTL-SHFQQTFCYLMHEF--HKFWIEEDPMDIMEFNRVREKFRKRI 302
L P + S + TF +L H + + I + + E + +K +R+
Sbjct: 268 ECLSRECNRQQKVIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKELEVLAKKSPRRL 327
Query: 303 IKQLQ 307
+K L+
Sbjct: 328 LKTLE 332
>gi|203098474 ELMO/CED-12 domain containing 3 isoform b [Homo
sapiens]
Length = 381
Score = 52.0 bits (123), Expect = 7e-07
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 22/185 (11%)
Query: 128 DSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYF 187
DS +P H +L ++K L + + W ++GFQG +P TD RG G L L +L Y
Sbjct: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224
Query: 188 AERDAT--AAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVS 245
T AQ++ S H + F ++ +NIT +A L
Sbjct: 225 VMDSKTLPMAQEIFRLSRH-----------------HIQQFPFCLMSVNITHIAIQALRE 267
Query: 246 GALKTHFYNIAPEAPTL-SHFQQTFCYLMHEF--HKFWIEEDPMDIMEFNRVREKFRKRI 302
L P + S + TF +L H + + I + + E + +K +R+
Sbjct: 268 ECLSRECNRQQKVIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKELEVLAKKSPRRL 327
Query: 303 IKQLQ 307
+K L+
Sbjct: 328 LKTLE 332
>gi|21362032 ELMO/CED-12 domain containing 3 isoform a [Homo
sapiens]
Length = 391
Score = 48.1 bits (113), Expect = 1e-05
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 20/150 (13%)
Query: 128 DSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYF 187
DS +P H +L ++K L + + W ++GFQG +P TD RG G L L +L Y
Sbjct: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224
Query: 188 AERDAT--AAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVS 245
T AQ++ S H + F ++ +NIT +A L
Sbjct: 225 VMDSKTLPMAQEIFRLSRH-----------------HIQQFPFCLMSVNITHIAIQALRE 267
Query: 246 GALKTHFYNIAPEAPTL-SHFQQTFCYLMH 274
L P + S + TF +L H
Sbjct: 268 ECLSRECNRQQKVIPVVNSFYAATFLHLAH 297
>gi|5031579 A-kinase anchor protein 8 [Homo sapiens]
Length = 692
Score = 29.6 bits (65), Expect = 3.8
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Query: 54 IETSLRDSKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYR 113
I T L D + LQ + IEK +++ME + P +P GI + +I
Sbjct: 421 ISTKLPDKTVEFLQEYIVNRNKKIEKRRQELMEKETAKPKPDPFKGIGQEHFFKKIEAAH 480
Query: 114 NLIADV------EKLRREAYDSDNPQHEEMLLKLWKFLK---PNTPLESRISKQWCEIGF 164
L D+ + L+R + D+ + + + +K + L +R + E
Sbjct: 481 CLACDMLIPAQPQLLQRHLHSVDHNHNRRLAAEQFKKTSLHVAKSVLNNRHIVKMLEKYL 540
Query: 165 QGDDPKT 171
+G+DP T
Sbjct: 541 KGEDPFT 547
>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
sapiens]
Length = 796
Score = 29.3 bits (64), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 206 KCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYN 241
KC K SK+E + + ++ I G NITDL ++
Sbjct: 302 KCKKLSKSEMHRGKKNEKNNKEIPITGKNITDLKFH 337
>gi|22749515 coiled-coil domain containing 110 isoform a [Homo
sapiens]
Length = 833
Score = 29.3 bits (64), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 206 KCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYN 241
KC K SK+E + + ++ I G NITDL ++
Sbjct: 339 KCKKLSKSEMHRGKKNEKNNKEIPITGKNITDLKFH 374
>gi|24307969 cytoplasmic FMR1 interacting protein 1 isoform a [Homo
sapiens]
Length = 1253
Score = 28.5 bits (62), Expect = 8.5
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 101 SLQACLLQIVGYRNLIADVEKLRREAYDSD---NPQHEEMLLKLWKF 144
SLQ L I GY L+AD+ L + Y++ P + MLLK+ F
Sbjct: 223 SLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGF 269
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 28.5 bits (62), Expect = 8.5
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 30 KLTGRCE-LQRICYNTKPGASRTMKIETSLRDSKSKLLQT-SVSVHPDAIEKTIEDIMEL 87
+L+ RC+ + + + S + L D +KL + +VS HPDA+ + +E ++
Sbjct: 2666 QLSDRCDWIDQAIVKSTQYQSLLRSLSDKLSDLDNKLSSSLAVSTHPDAMNQQLETAQKM 2725
Query: 88 KKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREAY-DSDNPQHEEMLLKLWKFLK 146
K+ Q+ ++ C D+ L +E Y ++ + E +LK +K ++
Sbjct: 2726 KQEIQQEKKQIKVAQALC-----------EDLSALVKEEYLKAELSRQLEGILKSFKDVE 2774
Query: 147 PNTPLESRISKQWCEIGFQGDDPKTDFR 174
+ + C Q DF+
Sbjct: 2775 QKAENHVQHLQSACASSHQFQQMSRDFQ 2802
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 28.5 bits (62), Expect = 8.5
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 30 KLTGRCE-LQRICYNTKPGASRTMKIETSLRDSKSKLLQT-SVSVHPDAIEKTIEDIMEL 87
+L+ RC+ + + + S + L D +KL + +VS HPDA+ + +E ++
Sbjct: 2677 QLSDRCDWIDQAIVKSTQYQSLLRSLSDKLSDLDNKLSSSLAVSTHPDAMNQQLETAQKM 2736
Query: 88 KKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREAY-DSDNPQHEEMLLKLWKFLK 146
K+ Q+ ++ C D+ L +E Y ++ + E +LK +K ++
Sbjct: 2737 KQEIQQEKKQIKVAQALC-----------EDLSALVKEEYLKAELSRQLEGILKSFKDVE 2785
Query: 147 PNTPLESRISKQWCEIGFQGDDPKTDFR 174
+ + C Q DF+
Sbjct: 2786 QKAENHVQHLQSACASSHQFQQMSRDFQ 2813
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 28.5 bits (62), Expect = 8.5
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 30 KLTGRCE-LQRICYNTKPGASRTMKIETSLRDSKSKLLQT-SVSVHPDAIEKTIEDIMEL 87
+L+ RC+ + + + S + L D +KL + +VS HPDA+ + +E ++
Sbjct: 2815 QLSDRCDWIDQAIVKSTQYQSLLRSLSDKLSDLDNKLSSSLAVSTHPDAMNQQLETAQKM 2874
Query: 88 KKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREAY-DSDNPQHEEMLLKLWKFLK 146
K+ Q+ ++ C D+ L +E Y ++ + E +LK +K ++
Sbjct: 2875 KQEIQQEKKQIKVAQALC-----------EDLSALVKEEYLKAELSRQLEGILKSFKDVE 2923
Query: 147 PNTPLESRISKQWCEIGFQGDDPKTDFR 174
+ + C Q DF+
Sbjct: 2924 QKAENHVQHLQSACASSHQFQQMSRDFQ 2951
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 28.5 bits (62), Expect = 8.5
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 30 KLTGRCE-LQRICYNTKPGASRTMKIETSLRDSKSKLLQT-SVSVHPDAIEKTIEDIMEL 87
+L+ RC+ + + + S + L D +KL + +VS HPDA+ + +E ++
Sbjct: 2637 QLSDRCDWIDQAIVKSTQYQSLLRSLSDKLSDLDNKLSSSLAVSTHPDAMNQQLETAQKM 2696
Query: 88 KKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREAY-DSDNPQHEEMLLKLWKFLK 146
K+ Q+ ++ C D+ L +E Y ++ + E +LK +K ++
Sbjct: 2697 KQEIQQEKKQIKVAQALC-----------EDLSALVKEEYLKAELSRQLEGILKSFKDVE 2745
Query: 147 PNTPLESRISKQWCEIGFQGDDPKTDFR 174
+ + C Q DF+
Sbjct: 2746 QKAENHVQHLQSACASSHQFQQMSRDFQ 2773
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 28.5 bits (62), Expect = 8.5
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 30 KLTGRCE-LQRICYNTKPGASRTMKIETSLRDSKSKLLQT-SVSVHPDAIEKTIEDIMEL 87
+L+ RC+ + + + S + L D +KL + +VS HPDA+ + +E ++
Sbjct: 2311 QLSDRCDWIDQAIVKSTQYQSLLRSLSDKLSDLDNKLSSSLAVSTHPDAMNQQLETAQKM 2370
Query: 88 KKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREAY-DSDNPQHEEMLLKLWKFLK 146
K+ Q+ ++ C D+ L +E Y ++ + E +LK +K ++
Sbjct: 2371 KQEIQQEKKQIKVAQALC-----------EDLSALVKEEYLKAELSRQLEGILKSFKDVE 2419
Query: 147 PNTPLESRISKQWCEIGFQGDDPKTDFR 174
+ + C Q DF+
Sbjct: 2420 QKAENHVQHLQSACASSHQFQQMSRDFQ 2447
>gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens]
Length = 4265
Score = 28.5 bits (62), Expect = 8.5
Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 8 LIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLLQ 67
LIQVC+Y + +C++++ EL R Y T + I + L K L+
Sbjct: 2774 LIQVCVYIHQSVSKKCIEYL-------AELTRHNYVTPKSYLELLHIFSILIGQKKLELK 2826
Query: 68 TSVSVHPDAIEK---TIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRR 124
T+ + ++K T ED+ ++++ ++P L + + +L + + A E+ R
Sbjct: 2827 TAKNRMKSGLDKLLRTSEDVAKMQEDLESMHPLLEEAAKDTMLTMEQIKVDTAIAEETRN 2886
Query: 125 EAYDSDNPQHEE 136
+ +E+
Sbjct: 2887 SVQTEEIKANEK 2898
>gi|62868213 golgi associated PDZ and coiled-coil motif containing
isoform b [Homo sapiens]
Length = 454
Score = 28.5 bits (62), Expect = 8.5
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 39 RICYNTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIED-IMELKKINPDVNPQ 97
++C+ + + K+E L D KS+L +T +EK + D +++L I ++ +
Sbjct: 79 QLCHKAQSVSQINHKLEAQLVDLKSELTET--QAEKVVLEKEVHDQLLQLHSIQLQLHAK 136
Query: 98 LGISLQACLLQIVGYRNLIADVEKLRREA 126
G S + ++ R L A+ ++ +EA
Sbjct: 137 TGQSADSGTIKAKLERELEANKKEKMKEA 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,111,514
Number of Sequences: 37866
Number of extensions: 493078
Number of successful extensions: 1481
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1464
Number of HSP's gapped (non-prelim): 24
length of query: 326
length of database: 18,247,518
effective HSP length: 103
effective length of query: 223
effective length of database: 14,347,320
effective search space: 3199452360
effective search space used: 3199452360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.