Search of human proteins with 193083197

Search of human proteins with 193083197

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|193083197 ubiquitin-like domain containing CTD phosphatase 1
[Homo sapiens]
         (318 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|193083197 ubiquitin-like domain containing CTD phosphatase 1 ...   642   0.0  
gi|4827050 ubiquitin specific protease 14 isoform a [Homo sapiens]     45   7e-05
gi|82880645 ubiquitin specific protease 14 isoform b [Homo sapiens]    38   0.010
gi|109715852 chromosome 6 open reading frame 204 isoform a [Homo...    36   0.040
gi|77917604 ubiquitin-binding protein homolog [Homo sapiens]           35   0.088
gi|170763513 ATP/GTP binding protein 1 [Homo sapiens]                  35   0.088
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]                33   0.44 
gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II, po...    33   0.44 
gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi...    32   0.97 
gi|73808268 matrix metalloproteinase 27 [Homo sapiens]                 32   0.97 
gi|126032338 ryanodine receptor 3 [Homo sapiens]                       31   1.3  
gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30...    31   1.7  
gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo sa...    31   1.7  
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]                  30   2.2  
gi|239735494 v-myb myeloblastosis viral oncogene homolog isoform...    30   2.8  
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]          30   3.7  
gi|209862861 hypothetical protein LOC9840 [Homo sapiens]               30   3.7  
gi|19923844 coiled-coil domain containing 82 [Homo sapiens]            30   3.7  
gi|40804470 calcium channel, voltage-dependent, beta 1 subunit i...    30   3.7  
gi|149363704 hypothetical protein LOC9840 [Homo sapiens]               30   3.7  
gi|156546890 WW and C2 domain containing 2 [Homo sapiens]              30   3.7  
gi|37675283 adaptor-related protein complex 4, epsilon 1 subunit...    29   6.3  
gi|126032348 hect domain and RLD 2 [Homo sapiens]                      28   8.2  
gi|39780588 TSR1, 20S rRNA accumulation [Homo sapiens]                 28   8.2  

>gi|193083197 ubiquitin-like domain containing CTD phosphatase 1
           [Homo sapiens]
          Length = 318

 Score =  642 bits (1655), Expect = 0.0
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVK 60
           MALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVK
Sbjct: 1   MALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVK 60

Query: 61  LGALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISR 120
           LGALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISR
Sbjct: 61  LGALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISR 120

Query: 121 RVKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIV 180
           RVKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIV
Sbjct: 121 RVKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIV 180

Query: 181 IWSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFS 240
           IWSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFS
Sbjct: 181 IWSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFS 240

Query: 241 EFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDF 300
           EFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDF
Sbjct: 241 EFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDF 300

Query: 301 LDLNHKYWERYLSKKQGQ 318
           LDLNHKYWERYLSKKQGQ
Sbjct: 301 LDLNHKYWERYLSKKQGQ 318


>gi|4827050 ubiquitin specific protease 14 isoform a [Homo
          sapiens]
          Length = 494

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 5  IIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL 64
          + VKWG +++    L+ D+  +  K  L  LTGV P RQK++   VKG   ++D   G +
Sbjct: 6  VTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM---VKGGTLKDD-DWGNI 61

Query: 65 KLKPNTKIMMMGTREESLED 84
          K+K    ++MMG+ +   E+
Sbjct: 62 KIKNGMTLLMMGSADALPEE 81


>gi|82880645 ubiquitin specific protease 14 isoform b [Homo
          sapiens]
          Length = 459

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 5  IIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL 64
          + VKWG +++    L+ D+  +  K  L  LTGV P RQK++   VKG   ++D   G +
Sbjct: 6  VTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM---VKGGTLKDD-DWGNI 61

Query: 65 KLK 67
          K+K
Sbjct: 62 KIK 64


>gi|109715852 chromosome 6 open reading frame 204 isoform a [Homo
           sapiens]
          Length = 805

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 16/160 (10%)

Query: 13  EYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALK---LKPN 69
           E+     S +  VL L +FLK    +  E +K L  K+K +    D  + +LK    K +
Sbjct: 443 EFEQKLASTEKEVLQLNEFLKQRLSLFSEEKKKLEEKLKTR----DRYISSLKKKCQKES 498

Query: 70  TKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENR--EENLLKISRRVKEYKV 127
            +      R E+LE  L   P  DDV +   ++ +++E +N+  +E L+   ++++E K 
Sbjct: 499 EQNKEKQRRIETLEKYLADLPTLDDVQSQ-SLQLQILEEKNKNLQEALIDTEKKLEEIKK 557

Query: 128 EI------LNPPREGKKLLVLDVDYTLFDHRSCAETGVEL 161
           +       L   ++ +K LV  V         C E G+ L
Sbjct: 558 QCQDKETQLICQKKKEKELVTTVQSLQQKVERCLEDGIRL 597


>gi|77917604 ubiquitin-binding protein homolog [Homo sapiens]
          Length = 309

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 22  DDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTREES 81
           D T  +LKQ + ++TG+ P  QK++    KG   E D  L  +K+    KIM++G+   +
Sbjct: 104 DSTGSELKQKIHSITGLPPAMQKVM---YKGLVPE-DKTLREIKVTSGAKIMVVGS---T 156

Query: 82  LEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKI 118
           + DVL      D    D   E+   E   R++   K+
Sbjct: 157 INDVLAVNTPKDAAQQDAKAEENKKEPLCRQKQHRKV 193


>gi|170763513 ATP/GTP binding protein 1 [Homo sapiens]
          Length = 1186

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 25/149 (16%)

Query: 37  GVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVV 96
           G+L   + +  +K+ G+ A  D     +K+  NT  + +      +  +   PP+ DDVV
Sbjct: 271 GILQSLKSVTNIKL-GRKAFIDAN--GMKILYNTSQLPVIPVTGPVAQLYSLPPEVDDVV 327

Query: 97  NDFDIEDEV-VEVENREENLLKISRRVKEYKVEI----LNPPREGKKLLVLDVDYTLFDH 151
           ++ D  D++ VE EN  EN   + +  K   +E     L P +E  + +    D  +++H
Sbjct: 328 DESDDNDDIDVEAENETENEDDLDQNFKNDDIETDINKLKPQQEPGRTI---EDLKMYEH 384

Query: 152 RSCAETGVELMRPYLHEFLTSAYEDYDIV 180
                         L   L   ++DYD++
Sbjct: 385 --------------LFPELVDDFQDYDLI 399


>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
          Length = 165

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 3   LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 62
           L I+V+      S   +    TV  LKQ +  L GV   +  L  L  +GKP E+ + LG
Sbjct: 82  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGV---QDDLFWLTFEGKPLEDQLPLG 138

Query: 63  ALKLKPNTKIMM 74
              LKP + + M
Sbjct: 139 EYGLKPLSTVFM 150


>gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) small phosphatase like 2 [Homo sapiens]
          Length = 466

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 20/139 (14%)

Query: 162 MRPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHT 221
           +RP+  EFL    + Y+I++++A+   + +   K L +       +   L     + V  
Sbjct: 328 LRPFFREFLERMSQMYEIILFTASKKVYAD---KLLNILDPKKQLVRHRLFREHCVCVQG 384

Query: 222 PRRGLIDVKPLGVIWGKFSEFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDK- 280
                  +K L ++    S+      TI+ D+  + F     NG+ I  +       DK 
Sbjct: 385 NY-----IKDLNILGRDLSK------TIIIDNSPQAFAYQLSNGIPIESWF-----MDKN 428

Query: 281 DKELLKLTQYLKEIAKLDD 299
           D ELLKL  +L+++ +L++
Sbjct: 429 DNELLKLIPFLEKLVELNE 447


>gi|157738667 FYVE and coiled-coil domain containing 1 [Homo
           sapiens]
          Length = 1478

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 41  ERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTREE-------SLEDVLGPPPDND 93
           E QK   ++ K   ++    L  L   P  ++ + G + E       SL++  G P +  
Sbjct: 533 EEQKKQLIQDKDHLSQQVGMLERLAGPPGPELPVAGEKNEALVPVNSSLQEAWGKPEEEQ 592

Query: 94  DVVNDFDIEDEVVEVENREENLLKISRRVKEYKVEIL--NPPREGKKLLVLDVDYTLFDH 151
             + +  ++D  V+  ++EE L + +R +++    ++  N   EG KL  L  DY     
Sbjct: 593 RGLQEAQLDDTKVQEGSQEEELRQANRELEKELQNVVGRNQLLEG-KLQALQADYQALQQ 651

Query: 152 RSCAETG 158
           R  A  G
Sbjct: 652 RESAIQG 658


>gi|73808268 matrix metalloproteinase 27 [Homo sapiens]
          Length = 513

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 156 ETGVELMRPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFMLDSAA 215
           E  ++L + YL++F +   E   +V   + N   I+ K++E+         +T  LDS  
Sbjct: 27  EENMQLAQAYLNQFYSLEIEGNHLV--QSKNRSLIDDKIREMQAFFGLT--VTGKLDSNT 82

Query: 216 MITVHTPRRGLIDVKPLGVI---WGKFSEFY 243
           +  + TPR G+ DV   G     W K++  Y
Sbjct: 83  LEIMKTPRCGVPDVGQYGYTLPGWRKYNLTY 113


>gi|126032338 ryanodine receptor 3 [Homo sapiens]
          Length = 4870

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 150  DHRSCAETGVELMRPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITF 209
            D R+  ++G EL++  L  F  +A ED +    +    K+  ++ +  GVS N NY    
Sbjct: 2937 DTRTVMKSGSELVKAGLRAFFENAAEDLEKTSENLKLGKFTHSRTQIKGVSQNINYTTVA 2996

Query: 210  MLDSAAMITVH 220
            +L     I  H
Sbjct: 2997 LLPILTSIFEH 3007


>gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30
          precursor [Homo sapiens]
          Length = 133

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 12 QEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTK 71
          QE     ++  +TV  +K  + +L G+ PE Q +L   + G P E++  LG   ++  T 
Sbjct: 8  QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVL---LAGAPLEDEATLGQCGVEALTT 64

Query: 72 IMMMG 76
          + + G
Sbjct: 65 LEVAG 69


>gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo
           sapiens]
          Length = 271

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 35/147 (23%)

Query: 161 LMRPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVH 220
           L RPY+ EFL    E ++ V+++A+  K+ +               +T +LD   +    
Sbjct: 141 LKRPYVDEFLRRMGELFECVLFTASLAKYAD--------------PVTDLLDRCGVFRAR 186

Query: 221 TPRRGLI--------DVKPLGVIWGKFSEFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFM 272
             R   +        D+  LG            + T++ D+   +++ +P+N + ++ + 
Sbjct: 187 LFRESCVFHQGCYVKDLSRLG---------RDLRKTLILDNSPASYIFHPENAVPVQSW- 236

Query: 273 KAHLNRDKDKELLKLTQYLKEIAKLDD 299
               +   D ELL L    +E++  +D
Sbjct: 237 ---FDDMADTELLNLIPIFEELSGAED 260


>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
          Length = 1726

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 79  EESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISRRVKEYKVEILNPPREGKK 138
           +E++E  + PP + ++   + DI+D +V+ + +     K  +++  Y    L   +E ++
Sbjct: 159 QEAMEAPMAPPEEEEEDDEESDIDDFIVDDDGQPLKKPKWRKKLPGYTDAAL---QEAQE 215

Query: 139 LLVLDVDYTLFDHRSCAETGVELMRPYLHE 168
           +  +D DY  F+  +  E   EL   Y +E
Sbjct: 216 IFGVDFDYDEFEKYN--EYDEELEEEYEYE 243


>gi|239735494 v-myb myeloblastosis viral oncogene homolog isoform 7
           [Homo sapiens]
          Length = 603

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 55  AENDVKLGALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREEN 114
           A  ++K G LK+ P T   ++    E L+DV+    D   +V +F      +  + ++EN
Sbjct: 475 AAQEIKYGPLKMLPQTPSHLV----EDLQDVIKQESDESGIVAEFQENGPPLLKKIKQEN 530

Query: 115 LLKIS 119
           +L  S
Sbjct: 531 ILTSS 535


>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
          Length = 4967

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 17/71 (23%), Positives = 34/71 (47%)

Query: 150  DHRSCAETGVELMRPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITF 209
            D R+  +TG+E ++  L  FL +A ED +  + +    ++   + +  GV+   NY    
Sbjct: 3041 DARTVMKTGLESVKSALRAFLDNAAEDLEKTMENLKQGQFTHTRNQPKGVTQIINYTTVA 3100

Query: 210  MLDSAAMITVH 220
            +L   + +  H
Sbjct: 3101 LLPMLSSLFEH 3111


>gi|209862861 hypothetical protein LOC9840 [Homo sapiens]
          Length = 521

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 88  PPPDNDDVVNDFD-IEDEVVEVENREENLLKISRRVKEYKVEILNPPREGKKL 139
           PPP N    N  D +  EV++    E+  L+    + ++  E   PP EGKKL
Sbjct: 301 PPPHNTPKRNSLDQVVLEVMDKVKEEKQFLQQDSDLGQFSQEDPVPPAEGKKL 353


>gi|19923844 coiled-coil domain containing 82 [Homo sapiens]
          Length = 544

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 4/119 (3%)

Query: 5   IIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL 64
           I+V+  G +     + ++ + ++++Q     T    +R+KL  LK   K      +    
Sbjct: 200 ILVRKVGVKRPRRVVEDEGSSVEMEQKTPEKTLAAQKREKLQKLKELSKQRSRQRRSSGR 259

Query: 65  KLKPNTKIMMMGTRE---ESLEDVLGPPPDNDD-VVNDFDIEDEVVEVENREENLLKIS 119
             + + K     + E   E  ED      D DD +++DF ++DE  + EN+ +   K++
Sbjct: 260 DFEDSEKESCPSSDEVDEEEEEDNYESDEDGDDYIIDDFVVQDEEGDEENKNQQGEKLT 318


>gi|40804470 calcium channel, voltage-dependent, beta 1 subunit
           isoform 2 [Homo sapiens]
          Length = 523

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 37  GVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKI----MMMGTREESLEDVLGPPPDN 92
           G +P   KL  L++  +      +LG+ K   N+      ++ GTR  +       PP +
Sbjct: 157 GFIPSPVKLDSLRLLQEQKLRQNRLGSSKSGDNSSSSLGDVVTGTRRPT-------PPAS 209

Query: 93  DDVVNDFDIEDEVVEVENREENLLKISRRVKEYKVEILNPPREGKKL 139
            + + +   E + +E+E  E  L + S   K     +  PP  GK++
Sbjct: 210 GNEMTNLAFELDPLELEEEEAELGEQSGSAKTSVSSVTTPPPHGKRI 256


>gi|149363704 hypothetical protein LOC9840 [Homo sapiens]
          Length = 521

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 88  PPPDNDDVVNDFD-IEDEVVEVENREENLLKISRRVKEYKVEILNPPREGKKL 139
           PPP N    N  D +  EV++    E+  L+    + ++  E   PP EGKKL
Sbjct: 301 PPPHNTPKRNSLDQVVLEVMDKVKEEKQFLQQDSDLGQFSQEDPVPPAEGKKL 353


>gi|156546890 WW and C2 domain containing 2 [Homo sapiens]
          Length = 1192

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 23/105 (21%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 42  RQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTREESLEDV--LGPPPDNDDVVNDF 99
           ++ +  LK++    +++   GAL ++   K+M++  +EE L+++  + P     D +   
Sbjct: 316 KRSMANLKIELSKLDSEAWPGALDIEKE-KLMLINEKEELLKELQFVTPQKRTQDELERL 374

Query: 100 D-----IEDEVVEVENREENLLKISRRVKEYKVEILNPPREGKKL 139
           +     +E+E++ V       L    R++E + E+L    E  KL
Sbjct: 375 EAERQRLEEELLSVRGTPSRALAERLRLEERRKELLQKLEETTKL 419


>gi|37675283 adaptor-related protein complex 4, epsilon 1 subunit
           [Homo sapiens]
          Length = 1137

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 175 EDYDIVIWSATNMKWIEAKMKELGVSTNANYKIT 208
           +D  +++WS TN   +E K  +L +    N+K+T
Sbjct: 937 DDCLLMVWSVTNKSGLELKSADLEIFPAENFKVT 970


>gi|126032348 hect domain and RLD 2 [Homo sapiens]
          Length = 4834

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 96   VNDFDIEDEVVEVENREENLLKISRRVKEYKVEILNP--PREGKKLLVLDVDYTLF-DHR 152
            + +F +++E V+VE   + LLK   R  E ++E ++       K  L+  V Y +F   +
Sbjct: 1639 IAEFALKEEPVDVEKMRKCLLKQLERA-EVRLEGIDTILKLASKNFLLPSVQYAMFCGWQ 1697

Query: 153  SCAETGVELMRPYLHEFLTSAYEDYDIV----------------IWSATNMKWI----EA 192
                 G+++  P     LT   +D D++                 W+  N++ +     A
Sbjct: 1698 RLIPEGIDIGEP-----LTDCLKDVDLIPPFNRMLLEVTFGKLYAWAVQNIRNVLMDASA 1752

Query: 193  KMKELGV 199
            K KELG+
Sbjct: 1753 KFKELGI 1759


>gi|39780588 TSR1, 20S rRNA accumulation [Homo sapiens]
          Length = 804

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 21/165 (12%)

Query: 23  DTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE------NDVKLGALK--LKPNTKIMM 74
           D V D+++ LK L    P RQ+ L  +V   P E       + +L   K  LK ++K++ 
Sbjct: 332 DAVDDMEEGLKVLMKADPGRQESLQAEVIPDPMEGEQTWPTEEELSEAKDFLKESSKVVK 391

Query: 75  ---MGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISRRVKEYKVEILN 131
               GT     E +L     +    ++++ +D   E    EE+  + S   +EY+   + 
Sbjct: 392 KVPKGTSSYQAEWILDGGSQSGGEGDEYEYDDMEHEDFMEEESQDESSEEEEEYETMTIG 451

Query: 132 PPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYED 176
                       V   L+D +   E   +++  Y  E L   + D
Sbjct: 452 E----------SVHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPD 486


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,145,353
Number of Sequences: 37866
Number of extensions: 521370
Number of successful extensions: 1715
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1705
Number of HSP's gapped (non-prelim): 27
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.