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Search of human proteins with 192449449
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens]
(1292 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens] 2620 0.0
gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens] 144 4e-34
gi|150417999 ubiquitin-conjugating enzyme E2Z [Homo sapiens] 97 8e-20
gi|7661808 ubiquitin-conjugating enzyme E2T [Homo sapiens] 67 8e-11
gi|112382377 ubiquitin-conjugating enzyme E2S [Homo sapiens] 64 9e-10
gi|32967280 ubiquitin-conjugating enzyme E2A isoform 1 [Homo sap... 62 4e-09
gi|4507771 ubiquitin-conjugating enzyme E2B [Homo sapiens] 61 8e-09
gi|22212943 ubiquitin-conjugating enzyme UBC3B [Homo sapiens] 60 1e-08
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 60 2e-08
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 60 2e-08
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 60 2e-08
gi|33149322 ubiquitin-conjugating enzyme E2D 3 isoform 2 [Homo s... 57 1e-07
gi|33149320 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo s... 57 1e-07
gi|33149318 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo s... 57 1e-07
gi|33149316 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo s... 57 1e-07
gi|33149314 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo s... 57 1e-07
gi|33149312 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo s... 57 1e-07
gi|33149310 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo s... 57 1e-07
gi|4507777 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo sa... 57 1e-07
gi|16357477 ubiquitin-conjugating enzyme Cdc34 [Homo sapiens] 56 3e-07
gi|4507775 ubiquitin-conjugating enzyme E2D 2 isoform 1 [Homo sa... 55 3e-07
gi|33149324 ubiquitin-conjugating enzyme E2D 3 isoform 3 [Homo s... 55 3e-07
gi|4507793 ubiquitin-conjugating enzyme E2N [Homo sapiens] 55 6e-07
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 54 1e-06
gi|29893557 ubiquitin-conjugating enzyme E2G 2 isoform 1 [Homo s... 54 1e-06
gi|163660385 ubiquitin-conjugating enzyme E2K isoform 2 [Homo sa... 53 2e-06
gi|4885417 ubiquitin-conjugating enzyme E2K isoform 1 [Homo sapi... 53 2e-06
gi|8393719 ubiquitin-conjugating enzyme E2D 4 (putative) [Homo s... 53 2e-06
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 53 2e-06
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 52 3e-06
>gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens]
Length = 1292
Score = 2620 bits (6790), Expect = 0.0
Identities = 1292/1292 (100%), Positives = 1292/1292 (100%)
Query: 1 MADPAAPTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGPEAGSQRLL 60
MADPAAPTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGPEAGSQRLL
Sbjct: 1 MADPAAPTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGPEAGSQRLL 60
Query: 61 FSHDLVSGRYRGSVHFGLVRLIHGEDSDSEGEEEGRGSSGCSEAGGAGHEEGRASPLRRG 120
FSHDLVSGRYRGSVHFGLVRLIHGEDSDSEGEEEGRGSSGCSEAGGAGHEEGRASPLRRG
Sbjct: 61 FSHDLVSGRYRGSVHFGLVRLIHGEDSDSEGEEEGRGSSGCSEAGGAGHEEGRASPLRRG 120
Query: 121 YVRVQWYPEGVKQHVKETKLKLEDRSVVPRDVVRHMRSTDSQCGTVIDVNIDCAVKLIGT 180
YVRVQWYPEGVKQHVKETKLKLEDRSVVPRDVVRHMRSTDSQCGTVIDVNIDCAVKLIGT
Sbjct: 121 YVRVQWYPEGVKQHVKETKLKLEDRSVVPRDVVRHMRSTDSQCGTVIDVNIDCAVKLIGT 180
Query: 181 NCIIYPVNSKDLQHIWPFMYGDYIAYDCWLGKVYDLKNQIILKLSNGARCSMNTEDGAKL 240
NCIIYPVNSKDLQHIWPFMYGDYIAYDCWLGKVYDLKNQIILKLSNGARCSMNTEDGAKL
Sbjct: 181 NCIIYPVNSKDLQHIWPFMYGDYIAYDCWLGKVYDLKNQIILKLSNGARCSMNTEDGAKL 240
Query: 241 YDVCPHVSDSGLFFDDSYGFYPGQVLIGPAKIFSSVQWLSGVKPVLSTKSKFRVVVEEVQ 300
YDVCPHVSDSGLFFDDSYGFYPGQVLIGPAKIFSSVQWLSGVKPVLSTKSKFRVVVEEVQ
Sbjct: 241 YDVCPHVSDSGLFFDDSYGFYPGQVLIGPAKIFSSVQWLSGVKPVLSTKSKFRVVVEEVQ 300
Query: 301 VVELKVTWITKSFCPGGTDSVSPPPSVITQENLGRVKRLGCFDHAQRQLGERCLYVFPAK 360
VVELKVTWITKSFCPGGTDSVSPPPSVITQENLGRVKRLGCFDHAQRQLGERCLYVFPAK
Sbjct: 301 VVELKVTWITKSFCPGGTDSVSPPPSVITQENLGRVKRLGCFDHAQRQLGERCLYVFPAK 360
Query: 361 VEPAKIAWECPEKNCAQGEGSMAKKVKRLLKKQVVRIMSCSPDTQCSRDHSMEDPDKKGE 420
VEPAKIAWECPEKNCAQGEGSMAKKVKRLLKKQVVRIMSCSPDTQCSRDHSMEDPDKKGE
Sbjct: 361 VEPAKIAWECPEKNCAQGEGSMAKKVKRLLKKQVVRIMSCSPDTQCSRDHSMEDPDKKGE 420
Query: 421 SKTKSEAESASPEETPDGSASPVEMQDEGAEEPHEAGEQLPPFLLKEGRDDRLHSAEQDA 480
SKTKSEAESASPEETPDGSASPVEMQDEGAEEPHEAGEQLPPFLLKEGRDDRLHSAEQDA
Sbjct: 421 SKTKSEAESASPEETPDGSASPVEMQDEGAEEPHEAGEQLPPFLLKEGRDDRLHSAEQDA 480
Query: 481 DDEAADDTDDTSSVTSSASSTTSSQSGSGTSRKKSIPLSIKNLKRKHKRKKNKITRDFKP 540
DDEAADDTDDTSSVTSSASSTTSSQSGSGTSRKKSIPLSIKNLKRKHKRKKNKITRDFKP
Sbjct: 481 DDEAADDTDDTSSVTSSASSTTSSQSGSGTSRKKSIPLSIKNLKRKHKRKKNKITRDFKP 540
Query: 541 GDRVAVEVVTTMTSADVMWQDGSVECNIRSNDLFPVHHLDNNEFCPGDFVVDKRVQSCPD 600
GDRVAVEVVTTMTSADVMWQDGSVECNIRSNDLFPVHHLDNNEFCPGDFVVDKRVQSCPD
Sbjct: 541 GDRVAVEVVTTMTSADVMWQDGSVECNIRSNDLFPVHHLDNNEFCPGDFVVDKRVQSCPD 600
Query: 601 PAVYGVVQSGDHIGRTCMVKWFKLRPSGDDVELIGEEEDVSVYDIADHPDFRFRTTDIVI 660
PAVYGVVQSGDHIGRTCMVKWFKLRPSGDDVELIGEEEDVSVYDIADHPDFRFRTTDIVI
Sbjct: 601 PAVYGVVQSGDHIGRTCMVKWFKLRPSGDDVELIGEEEDVSVYDIADHPDFRFRTTDIVI 660
Query: 661 RIGNTEDGAPHKEDEPSVGQVARVDVSSKVEVVWADNSKTIILPQHLYNIESEIEESDYD 720
RIGNTEDGAPHKEDEPSVGQVARVDVSSKVEVVWADNSKTIILPQHLYNIESEIEESDYD
Sbjct: 661 RIGNTEDGAPHKEDEPSVGQVARVDVSSKVEVVWADNSKTIILPQHLYNIESEIEESDYD 720
Query: 721 SVEGSTSGASSDEWEDDSDSWETDNGLVEDEHPKIEEPPIPPLEQPVAPEDKGVVISEEA 780
SVEGSTSGASSDEWEDDSDSWETDNGLVEDEHPKIEEPPIPPLEQPVAPEDKGVVISEEA
Sbjct: 721 SVEGSTSGASSDEWEDDSDSWETDNGLVEDEHPKIEEPPIPPLEQPVAPEDKGVVISEEA 780
Query: 781 ATAAVQGAVAMAAPMAGLMEKAGKDGPPKSFRELKEAIKILESLKNMTVEQLLTGSPTSP 840
ATAAVQGAVAMAAPMAGLMEKAGKDGPPKSFRELKEAIKILESLKNMTVEQLLTGSPTSP
Sbjct: 781 ATAAVQGAVAMAAPMAGLMEKAGKDGPPKSFRELKEAIKILESLKNMTVEQLLTGSPTSP 840
Query: 841 TVEPEKPTREKKFLDDIKKLQENLKKTLDNVAIVEEEKMEAVPDVERKEDKPEGQSPVKA 900
TVEPEKPTREKKFLDDIKKLQENLKKTLDNVAIVEEEKMEAVPDVERKEDKPEGQSPVKA
Sbjct: 841 TVEPEKPTREKKFLDDIKKLQENLKKTLDNVAIVEEEKMEAVPDVERKEDKPEGQSPVKA 900
Query: 901 EWPSETPVLCQQCGGKPGVTFTSAKGEVFSVLEFAPSNHSFKKIEFQPPEAKKFFSTVRK 960
EWPSETPVLCQQCGGKPGVTFTSAKGEVFSVLEFAPSNHSFKKIEFQPPEAKKFFSTVRK
Sbjct: 901 EWPSETPVLCQQCGGKPGVTFTSAKGEVFSVLEFAPSNHSFKKIEFQPPEAKKFFSTVRK 960
Query: 961 EMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFC 1020
EMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFC
Sbjct: 961 EMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFC 1020
Query: 1021 YLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEPYYN 1080
YLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEPYYN
Sbjct: 1021 YLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEPYYN 1080
Query: 1081 EAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGWRLVN 1140
EAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGWRLVN
Sbjct: 1081 EAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGWRLVN 1140
Query: 1141 RIESWLETHALLEKAQALPNGVPKASSSPEPPAVAELSDSGQQEPEDGGPAPGEASQGSD 1200
RIESWLETHALLEKAQALPNGVPKASSSPEPPAVAELSDSGQQEPEDGGPAPGEASQGSD
Sbjct: 1141 RIESWLETHALLEKAQALPNGVPKASSSPEPPAVAELSDSGQQEPEDGGPAPGEASQGSD 1200
Query: 1201 SEGGAQGLASASRDHTDQTSETAPDASVPPSVKPKKRRKSYRSFLPEKSGYPDIGFPLFP 1260
SEGGAQGLASASRDHTDQTSETAPDASVPPSVKPKKRRKSYRSFLPEKSGYPDIGFPLFP
Sbjct: 1201 SEGGAQGLASASRDHTDQTSETAPDASVPPSVKPKKRRKSYRSFLPEKSGYPDIGFPLFP 1260
Query: 1261 LSKGFIKSIRGVLTQFRAALLEAGMPECTEDK 1292
LSKGFIKSIRGVLTQFRAALLEAGMPECTEDK
Sbjct: 1261 LSKGFIKSIRGVLTQFRAALLEAGMPECTEDK 1292
>gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]
Length = 4857
Score = 144 bits (364), Expect = 4e-34
Identities = 78/196 (39%), Positives = 115/196 (58%), Gaps = 10/196 (5%)
Query: 960 KEMALLATSLP----EGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAV 1015
+E L+TSLP + V+ E+R+D+ LI GP TPY +G + FD+ P YP+
Sbjct: 4580 QEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSS 4639
Query: 1016 PPHFCYLSQCSG---RLNPNLYDNGKVCVSLLGTWIGKGTERWTSK-SSLLQVLISIQGL 1071
PP L G R NPNLY++GKVC+S+L TW G+ E+W + SS LQVL+S+Q L
Sbjct: 4640 PP-LVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSL 4698
Query: 1072 ILVNEPYYNEAGFDSDRGLQEGYENSRCYN-EMALIRVVQSMTQLVRRPPEVFEQEIRQH 1130
ILV EPY+NE G++ RG G ++SR Y+ + V +M + +R P F++ I +H
Sbjct: 4699 ILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKH 4758
Query: 1131 FSTGGWRLVNRIESWL 1146
F ++ + E W+
Sbjct: 4759 FYLKRVEIMAQCEEWI 4774
>gi|150417999 ubiquitin-conjugating enzyme E2Z [Homo sapiens]
Length = 354
Score = 97.4 bits (241), Expect = 8e-20
Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 958 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 1017
+++++ + P G+ V M ALI GP TPYE G +LF + P YP PP
Sbjct: 104 IKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPP 163
Query: 1018 HFCYLSQCSG--RLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVN 1075
++ + R NPN Y NGKVC+S+LGTW G W+ S+ VLISIQ L+ N
Sbjct: 164 RVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPA---WSPAQSISSVLISIQSLMTEN 220
Query: 1076 EPYYNEAGFDSDRGLQEGYENSRC 1099
PY+NE GF+ +R + + C
Sbjct: 221 -PYHNEPGFEQERHPGDSKNYNEC 243
>gi|7661808 ubiquitin-conjugating enzyme E2T [Homo sapiens]
Length = 197
Score = 67.4 bits (163), Expect = 8e-11
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 15/171 (8%)
Query: 956 STVRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAV 1015
S +++E+ +LAT P GI +D+MD A I G TPYE G++ ++ +P YP
Sbjct: 5 SRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFE 64
Query: 1016 PPHFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVN 1075
PP +L+ +PN+ G++C+ +L KG W ++ VL SIQ +L++
Sbjct: 65 PPQIRFLTPI---YHPNIDSAGRICLDVL-KLPPKGA--WRPSLNIATVLTSIQ--LLMS 116
Query: 1076 EPYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQE 1126
EP + D L + YN+ A ++ + T+ R + ++E
Sbjct: 117 EP-------NPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEE 160
>gi|112382377 ubiquitin-conjugating enzyme E2S [Homo sapiens]
Length = 222
Score = 63.9 bits (154), Expect = 9e-10
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 18/154 (11%)
Query: 944 IEFQPPEAKKFFSTVRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYL 1003
+E PP + V KE+ L P+GI V E+ + I+GP TPY GL+
Sbjct: 5 VENLPPHIIRL---VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFR 61
Query: 1004 FDIQLPNIYPAVPPHFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQ 1063
+ L +PA PP +L++ +PN+ NG++CV++L WT++ +
Sbjct: 62 MKLLLGKDFPASPPKGYFLTKI---FHPNVGANGEICVNVL-------KRDWTAELGIRH 111
Query: 1064 VLISIQGLILVNEPYYNEAGFDSDRG--LQEGYE 1095
VL++I+ L++ P E+ + + G L E YE
Sbjct: 112 VLLTIKCLLIHPNP---ESALNEEAGRLLLENYE 142
>gi|32967280 ubiquitin-conjugating enzyme E2A isoform 1 [Homo sapiens]
Length = 152
Score = 62.0 bits (149), Expect = 4e-09
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Query: 970 PEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRL 1029
P G+ E+ + +++A+I GP TP+EDG + I+ YP PP ++S+
Sbjct: 21 PAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSK---MF 77
Query: 1030 NPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEPYYNEAGFDSDRG 1089
+PN+Y +G +C+ +L RW+ + +L SIQ L+ +EP N + +
Sbjct: 78 HPNVYADGSICLDIL-------QNRWSPTYDVSSILTSIQSLL--DEPNPNSPA--NSQA 126
Query: 1090 LQEGYENSRCYNEMALIRVVQS 1111
Q EN R Y + V QS
Sbjct: 127 AQLYQENKREYEKRVSAIVEQS 148
>gi|4507771 ubiquitin-conjugating enzyme E2B [Homo sapiens]
Length = 152
Score = 60.8 bits (146), Expect = 8e-09
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 970 PEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRL 1029
P G+ E+ + ++A+I GP TP+EDG + I+ YP PP +LS+
Sbjct: 21 PVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSK---MF 77
Query: 1030 NPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEPYYNEAGFDSDRG 1089
+PN+Y +G +C+ +L RW+ + +L SIQ L+ +EP N + +
Sbjct: 78 HPNVYADGSICLDIL-------QNRWSPTYDVSSILTSIQSLL--DEPNPNSPA--NSQA 126
Query: 1090 LQEGYENSRCYNEMALIRVVQS 1111
Q EN R Y + V QS
Sbjct: 127 AQLYQENKREYEKRVSAIVEQS 148
>gi|22212943 ubiquitin-conjugating enzyme UBC3B [Homo sapiens]
Length = 238
Score = 60.1 bits (144), Expect = 1e-08
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 961 EMALLATSLPEGIMVKTFEDRMDLFS--ALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPH 1018
E+ L EG + T D DL++ I GP T YE G + I+ P YP PP
Sbjct: 16 ELKSLQEEPVEGFRI-TLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPT 74
Query: 1019 FCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGK------GTERWTSKSSLLQVLISIQGLI 1072
F +L++ +PN+Y+NG VC+S+L + +ERW ++ +L+S+ +
Sbjct: 75 FRFLTK---MWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV--IS 129
Query: 1073 LVNEP 1077
L+NEP
Sbjct: 130 LLNEP 134
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 59.7 bits (143), Expect = 2e-08
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 1 MADPAAPTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGPEAGSQR 58
+A P A APAPA APAPAP P A AP PAPAPA A P+ D+ P+ +++
Sbjct: 158 VAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQ 215
Score = 59.7 bits (143), Expect = 2e-08
Identities = 30/53 (56%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 6 APTPA-APAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGPEAGSQ 57
AP PA APAPA AP AP PAPA AP PAPAPA D+A S++ G G +
Sbjct: 170 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQR 222
Score = 48.5 bits (114), Expect = 4e-05
Identities = 27/55 (49%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 4 PAAPTPAAPAPAQAPAPAPEAVPAPAAAPV------PAPAPASDSASGPSSDSGP 52
PA+ P P A APAPAP V AP AAPV PAPAPA A P+ + P
Sbjct: 133 PASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAP 187
Score = 38.5 bits (88), Expect = 0.042
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 6 APTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGP 46
AP P APA P VP A AP PAPAP + + P
Sbjct: 121 APEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAP 161
Score = 30.8 bits (68), Expect = 8.8
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 17/66 (25%)
Query: 6 APTPAAPAPAQAPAPAPEA-----------------VPAPAAAPVPAPAPASDSASGPSS 48
AP P A A A +P P A VPAPA+ P P P A A P+
Sbjct: 94 APRPVAVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAP 153
Query: 49 DSGPEA 54
+ P A
Sbjct: 154 VAAPVA 159
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 59.7 bits (143), Expect = 2e-08
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 1 MADPAAPTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGPEAGSQR 58
+A P A APAPA APAPAP P A AP PAPAPA A P+ D+ P+ +++
Sbjct: 158 VAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQ 215
Score = 59.7 bits (143), Expect = 2e-08
Identities = 30/53 (56%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 6 APTPA-APAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGPEAGSQ 57
AP PA APAPA AP AP PAPA AP PAPAPA D+A S++ G G +
Sbjct: 170 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQR 222
Score = 48.5 bits (114), Expect = 4e-05
Identities = 27/55 (49%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 4 PAAPTPAAPAPAQAPAPAPEAVPAPAAAPV------PAPAPASDSASGPSSDSGP 52
PA+ P P A APAPAP V AP AAPV PAPAPA A P+ + P
Sbjct: 133 PASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAP 187
Score = 38.5 bits (88), Expect = 0.042
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 6 APTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGP 46
AP P APA P VP A AP PAPAP + + P
Sbjct: 121 APEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAP 161
Score = 30.8 bits (68), Expect = 8.8
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 17/66 (25%)
Query: 6 APTPAAPAPAQAPAPAPEA-----------------VPAPAAAPVPAPAPASDSASGPSS 48
AP P A A A +P P A VPAPA+ P P P A A P+
Sbjct: 94 APRPVAVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAP 153
Query: 49 DSGPEA 54
+ P A
Sbjct: 154 VAAPVA 159
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 59.7 bits (143), Expect = 2e-08
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 1 MADPAAPTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGPEAGSQR 58
+A P A APAPA APAPAP P A AP PAPAPA A P+ D+ P+ +++
Sbjct: 169 VAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQ 226
Score = 59.7 bits (143), Expect = 2e-08
Identities = 30/53 (56%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 6 APTPA-APAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGPEAGSQ 57
AP PA APAPA AP AP PAPA AP PAPAPA D+A S++ G G +
Sbjct: 181 APAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQR 233
Score = 48.5 bits (114), Expect = 4e-05
Identities = 27/55 (49%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 4 PAAPTPAAPAPAQAPAPAPEAVPAPAAAPV------PAPAPASDSASGPSSDSGP 52
PA+ P P A APAPAP V AP AAPV PAPAPA A P+ + P
Sbjct: 144 PASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAP 198
Score = 38.5 bits (88), Expect = 0.042
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 6 APTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGP 46
AP P APA P VP A AP PAPAP + + P
Sbjct: 132 APEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAP 172
Score = 30.8 bits (68), Expect = 8.8
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 17/66 (25%)
Query: 6 APTPAAPAPAQAPAPAPEA-----------------VPAPAAAPVPAPAPASDSASGPSS 48
AP P A A A +P P A VPAPA+ P P P A A P+
Sbjct: 105 APRPVAVAVAVSPPLEPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAP 164
Query: 49 DSGPEA 54
+ P A
Sbjct: 165 VAAPVA 170
>gi|33149322 ubiquitin-conjugating enzyme E2D 3 isoform 2 [Homo
sapiens]
Length = 148
Score = 56.6 bits (135), Expect = 1e-07
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 958 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 1017
+ KE++ LA P D M + A I GP +PY+ G++ I P YP PP
Sbjct: 6 INKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP 65
Query: 1018 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
+ ++ +PN+ NG +C+ +L +W+ ++ +VL+SI L+ P
Sbjct: 66 KVAFTTRI---YHPNINSNGSICLDIL-------RSQWSPALTISKVLLSICSLLCDPNP 115
>gi|33149320 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 56.6 bits (135), Expect = 1e-07
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 958 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 1017
+ KE++ LA P D M + A I GP +PY+ G++ I P YP PP
Sbjct: 6 INKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP 65
Query: 1018 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
+ ++ +PN+ NG +C+ +L +W+ ++ +VL+SI L+ P
Sbjct: 66 KVAFTTRI---YHPNINSNGSICLDIL-------RSQWSPALTISKVLLSICSLLCDPNP 115
>gi|33149318 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 56.6 bits (135), Expect = 1e-07
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 958 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 1017
+ KE++ LA P D M + A I GP +PY+ G++ I P YP PP
Sbjct: 6 INKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP 65
Query: 1018 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
+ ++ +PN+ NG +C+ +L +W+ ++ +VL+SI L+ P
Sbjct: 66 KVAFTTRI---YHPNINSNGSICLDIL-------RSQWSPALTISKVLLSICSLLCDPNP 115
>gi|33149316 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 56.6 bits (135), Expect = 1e-07
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 958 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 1017
+ KE++ LA P D M + A I GP +PY+ G++ I P YP PP
Sbjct: 6 INKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP 65
Query: 1018 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
+ ++ +PN+ NG +C+ +L +W+ ++ +VL+SI L+ P
Sbjct: 66 KVAFTTRI---YHPNINSNGSICLDIL-------RSQWSPALTISKVLLSICSLLCDPNP 115
>gi|33149314 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 56.6 bits (135), Expect = 1e-07
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 958 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 1017
+ KE++ LA P D M + A I GP +PY+ G++ I P YP PP
Sbjct: 6 INKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP 65
Query: 1018 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
+ ++ +PN+ NG +C+ +L +W+ ++ +VL+SI L+ P
Sbjct: 66 KVAFTTRI---YHPNINSNGSICLDIL-------RSQWSPALTISKVLLSICSLLCDPNP 115
>gi|33149312 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 56.6 bits (135), Expect = 1e-07
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 958 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 1017
+ KE++ LA P D M + A I GP +PY+ G++ I P YP PP
Sbjct: 6 INKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP 65
Query: 1018 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
+ ++ +PN+ NG +C+ +L +W+ ++ +VL+SI L+ P
Sbjct: 66 KVAFTTRI---YHPNINSNGSICLDIL-------RSQWSPALTISKVLLSICSLLCDPNP 115
>gi|33149310 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 56.6 bits (135), Expect = 1e-07
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 958 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 1017
+ KE++ LA P D M + A I GP +PY+ G++ I P YP PP
Sbjct: 6 INKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP 65
Query: 1018 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
+ ++ +PN+ NG +C+ +L +W+ ++ +VL+SI L+ P
Sbjct: 66 KVAFTTRI---YHPNINSNGSICLDIL-------RSQWSPALTISKVLLSICSLLCDPNP 115
>gi|4507777 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 56.6 bits (135), Expect = 1e-07
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 958 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 1017
+ KE++ LA P D M + A I GP +PY+ G++ I P YP PP
Sbjct: 6 INKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP 65
Query: 1018 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
+ ++ +PN+ NG +C+ +L +W+ ++ +VL+SI L+ P
Sbjct: 66 KVAFTTRI---YHPNINSNGSICLDIL-------RSQWSPALTISKVLLSICSLLCDPNP 115
>gi|16357477 ubiquitin-conjugating enzyme Cdc34 [Homo sapiens]
Length = 236
Score = 55.8 bits (133), Expect = 3e-07
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 14/115 (12%)
Query: 971 EGIMVKTFEDRMDLFS--ALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGR 1028
EG V T D DL++ I GP T YE G + ++ P YP PP F +L++
Sbjct: 26 EGFRV-TLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK---M 81
Query: 1029 LNPNLYDNGKVCVSLLGTWIGK------GTERWTSKSSLLQVLISIQGLILVNEP 1077
+PN+Y+ G VC+S+L + +ERW ++ +L+S+ + L+NEP
Sbjct: 82 WHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV--ISLLNEP 134
>gi|4507775 ubiquitin-conjugating enzyme E2D 2 isoform 1 [Homo
sapiens]
Length = 147
Score = 55.5 bits (132), Expect = 3e-07
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 958 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 1017
+ KE+ LA P D M + A I GP +PY+ G++ I P YP PP
Sbjct: 6 IHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP 65
Query: 1018 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
+ ++ +PN+ NG +C+ +L +W+ ++ +VL+SI L+ P
Sbjct: 66 KVAFTTRI---YHPNINSNGSICLDIL-------RSQWSPALTISKVLLSICSLLCDPNP 115
>gi|33149324 ubiquitin-conjugating enzyme E2D 3 isoform 3 [Homo
sapiens]
Length = 149
Score = 55.5 bits (132), Expect = 3e-07
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 960 KEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHF 1019
KE++ LA P D M + A I GP +PY+ G++ I P YP PP
Sbjct: 10 KELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 1020 CYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
+ ++ +PN+ NG +C+ +L +W+ ++ +VL+SI L+ P
Sbjct: 70 AFTTRI---YHPNINSNGSICLDIL-------RSQWSPALTISKVLLSICSLLCDPNP 117
>gi|4507793 ubiquitin-conjugating enzyme E2N [Homo sapiens]
Length = 152
Score = 54.7 bits (130), Expect = 6e-07
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 958 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 1017
+++ LLA +P GI + E F +I GP +P+E G + ++ LP YP P
Sbjct: 9 IKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 67
Query: 1018 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
++++ +PN+ G++C+ +L ++W+ + VL+SIQ L+ P
Sbjct: 68 KVRFMTKI---YHPNVDKLGRICLDIL-------KDKWSPALQIRTVLLSIQALLSAPNP 117
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 53.5 bits (127), Expect = 1e-06
Identities = 31/59 (52%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 1 MADPAAPTPAAPA-----PAQAPAPAPEAVPAPAAAPVPAPAPA--SDSASGPSSDSGP 52
MA PA P A PA PA APA P PAPAAAPVPA APA SD A+ ++ + P
Sbjct: 1 MATPAVPVSAPPATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAP 59
Score = 49.7 bits (117), Expect = 2e-05
Identities = 31/60 (51%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Query: 2 ADPAAPTP---AAPAPAQAPAPAPEAVPAPAAAPV----PAPAPASDSASG--PSSDSGP 52
A PA PTP AAPA AP PAP A P PAAAP PA A A+ +A G P+S P
Sbjct: 10 APPATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAP 69
Score = 40.0 bits (92), Expect = 0.014
Identities = 24/52 (46%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 ADPAAPTPA-APAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGP 52
A APTPA A AP A APA + PA AAA AP SA P+ P
Sbjct: 24 ASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAPAQTPAP 75
>gi|29893557 ubiquitin-conjugating enzyme E2G 2 isoform 1 [Homo
sapiens]
Length = 165
Score = 53.5 bits (127), Expect = 1e-06
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 961 EMALLATSLPEGIMVKTF-EDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHF 1019
E L + PEGI+ E+ + ALI GP T +E G++ + P YP PP
Sbjct: 12 EYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKM 71
Query: 1020 CYLSQCSGRLNPNLYDNGKVCVSLLGT------WIGKGTERWTSKSSLLQVLISIQGLI 1072
+ + +PN+Y +G+VC+S+L ERW+ S+ ++L+S+ ++
Sbjct: 72 RFTCE---MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML 127
>gi|163660385 ubiquitin-conjugating enzyme E2K isoform 2 [Homo
sapiens]
Length = 157
Score = 53.1 bits (126), Expect = 2e-06
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 11/90 (12%)
Query: 989 IKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRLNPNLYD-NGKVCVSLLGTW 1047
I GP TPYE G Y +I++P YP PP ++++ +PN+ G +C+ +L
Sbjct: 43 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI---WHPNISSVTGAICLDIL--- 96
Query: 1048 IGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
++W + +L VL+S+Q L+ EP
Sbjct: 97 ----KDQWAAAMTLRTVLLSLQALLAAAEP 122
>gi|4885417 ubiquitin-conjugating enzyme E2K isoform 1 [Homo sapiens]
Length = 200
Score = 53.1 bits (126), Expect = 2e-06
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 11/90 (12%)
Query: 989 IKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRLNPNLYD-NGKVCVSLLGTW 1047
I GP TPYE G Y +I++P YP PP ++++ +PN+ G +C+ +L
Sbjct: 43 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI---WHPNISSVTGAICLDIL--- 96
Query: 1048 IGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
++W + +L VL+S+Q L+ EP
Sbjct: 97 ----KDQWAAAMTLRTVLLSLQALLAAAEP 122
>gi|8393719 ubiquitin-conjugating enzyme E2D 4 (putative) [Homo
sapiens]
Length = 147
Score = 53.1 bits (126), Expect = 2e-06
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 958 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 1017
++KE+ L P D + + A I GP +PY+ G++ I P YP PP
Sbjct: 6 IQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP 65
Query: 1018 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEP 1077
+ ++ +PN+ NG +C+ +L +W+ ++ +VL+SI L+ P
Sbjct: 66 KVAFTTKI---YHPNINSNGSICLDIL-------RSQWSPALTVSKVLLSICSLLCDPNP 115
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 53.1 bits (126), Expect = 2e-06
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 1 MADPAAPTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGP 52
+ P A A+PAPA AP+PAP APA+A PAPAPA + P+S S P
Sbjct: 708 LPSPPAVAVASPAPAPAPSPAPARAQAPASARDPAPAPAPVAGPAPASTSAP 759
Score = 52.0 bits (123), Expect = 4e-06
Identities = 27/47 (57%), Positives = 30/47 (63%)
Query: 1 MADPAAPTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPS 47
+A PA +PAPA+A APA PAPA APV PAPAS SA G S
Sbjct: 716 VASPAPAPAPSPAPARAQAPASARDPAPAPAPVAGPAPASTSAPGDS 762
Score = 31.6 bits (70), Expect = 5.1
Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 37/83 (44%)
Query: 6 APTPAA---------PAPAQAPAPAPE---------------------AVPAPAA----- 30
AP PAA PAP Q PAP P A+P+P A
Sbjct: 660 APLPAAVVPSTPTSAPAPTQ-PAPTPTSGPIGLRILAQQPLSVTCFSLALPSPPAVAVAS 718
Query: 31 -APVPAPAPASDSASGPSSDSGP 52
AP PAP+PA A P+S P
Sbjct: 719 PAPAPAPSPAPARAQAPASARDP 741
>gi|153791535 general control of amino acid synthesis 5-like 2
[Homo sapiens]
Length = 837
Score = 52.4 bits (124), Expect = 3e-06
Identities = 32/67 (47%), Positives = 39/67 (58%), Gaps = 11/67 (16%)
Query: 1 MADPA-APTPAA---PAPAQAPAPAPEAVPAPAAA----PVPAPAPASDSASGPSSDS-- 50
MA+P+ APTPA P P Q+PAPAP PAP+ A P P PAPA A+ P+ +
Sbjct: 1 MAEPSQAPTPAPAAQPRPLQSPAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTGT 60
Query: 51 -GPEAGS 56
GP GS
Sbjct: 61 GGPGVGS 67
Score = 44.7 bits (104), Expect = 6e-04
Identities = 25/46 (54%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 6 APTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSG 51
APTP PAP+ A AP P PAPA AP APA S GP SG
Sbjct: 25 APTPT-PAPSPASAPIPTPTPAPAPAPAAAPA-GSTGTGGPGVGSG 68
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,872,125
Number of Sequences: 37866
Number of extensions: 3140017
Number of successful extensions: 39829
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 764
Number of HSP's that attempted gapping in prelim test: 24696
Number of HSP's gapped (non-prelim): 12042
length of query: 1292
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1178
effective length of database: 13,930,794
effective search space: 16410475332
effective search space used: 16410475332
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.