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Search of human proteins with 189409142
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|189409142 telomeric repeat binding factor 1 isoform 1 [Homo
sapiens]
(439 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189409142 telomeric repeat binding factor 1 isoform 1 [Homo s... 875 0.0
gi|189409140 telomeric repeat binding factor 1 isoform 2 [Homo s... 828 0.0
gi|169212925 PREDICTED: similar to telomeric repeat binding fact... 728 0.0
gi|89044853 PREDICTED: similar to telomeric repeat binding facto... 726 0.0
gi|239747124 PREDICTED: hypothetical protein XP_002343917 [Homo ... 231 1e-60
gi|5032169 telomeric repeat binding factor 2 [Homo sapiens] 131 1e-30
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 42 8e-04
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom... 42 8e-04
gi|4505293 MYB-related protein B [Homo sapiens] 41 0.002
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 39 0.012
gi|17975763 myelin transcription factor 1 [Homo sapiens] 38 0.016
gi|47578107 delangin isoform B [Homo sapiens] 38 0.016
gi|47578105 delangin isoform A [Homo sapiens] 38 0.016
gi|4505917 exosome component 10 isoform 2 [Homo sapiens] 38 0.016
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 37 0.036
gi|122937227 U2-associated SR140 protein [Homo sapiens] 37 0.036
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo... 37 0.046
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo... 37 0.046
gi|239735496 v-myb myeloblastosis viral oncogene homolog isoform... 36 0.061
gi|239735494 v-myb myeloblastosis viral oncogene homolog isoform... 36 0.061
gi|239735492 v-myb myeloblastosis viral oncogene homolog isoform... 36 0.061
gi|239735490 v-myb myeloblastosis viral oncogene homolog isoform... 36 0.061
gi|239735488 v-myb myeloblastosis viral oncogene homolog isoform... 36 0.061
gi|46361980 v-myb myeloblastosis viral oncogene homolog isoform ... 36 0.061
gi|194328729 v-myb myeloblastosis viral oncogene homolog isoform... 36 0.061
gi|194328727 v-myb myeloblastosis viral oncogene homolog isoform... 36 0.061
gi|87298939 hypothetical protein LOC131831 [Homo sapiens] 36 0.061
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 36 0.061
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 36 0.061
gi|4504487 histidine rich calcium binding protein precursor [Hom... 36 0.079
>gi|189409142 telomeric repeat binding factor 1 isoform 1 [Homo
sapiens]
Length = 439
Score = 875 bits (2260), Expect = 0.0
Identities = 439/439 (100%), Positives = 439/439 (100%)
Query: 1 MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE 60
MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE
Sbjct: 1 MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE 60
Query: 61 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL 120
EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL
Sbjct: 61 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL 120
Query: 121 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA 180
RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA
Sbjct: 121 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA 180
Query: 181 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI 240
IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI
Sbjct: 181 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI 240
Query: 241 KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDK 300
KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDK
Sbjct: 241 KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDK 300
Query: 301 QSAVTESSEGTVSLLRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATES 360
QSAVTESSEGTVSLLRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATES
Sbjct: 301 QSAVTESSEGTVSLLRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATES 360
Query: 361 RIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML 420
RIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML
Sbjct: 361 RIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML 420
Query: 421 KDRWRTMKKLKLISSDSED 439
KDRWRTMKKLKLISSDSED
Sbjct: 421 KDRWRTMKKLKLISSDSED 439
>gi|189409140 telomeric repeat binding factor 1 isoform 2 [Homo
sapiens]
Length = 419
Score = 828 bits (2139), Expect = 0.0
Identities = 419/439 (95%), Positives = 419/439 (95%), Gaps = 20/439 (4%)
Query: 1 MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE 60
MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE
Sbjct: 1 MAEDVSSAAPSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEE 60
Query: 61 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL 120
EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL
Sbjct: 61 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL 120
Query: 121 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA 180
RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA
Sbjct: 121 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQA 180
Query: 181 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI 240
IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI
Sbjct: 181 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI 240
Query: 241 KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDK 300
KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRK
Sbjct: 241 KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRK----- 295
Query: 301 QSAVTESSEGTVSLLRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATES 360
RSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATES
Sbjct: 296 ---------------RSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATES 340
Query: 361 RIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML 420
RIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML
Sbjct: 341 RIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML 400
Query: 421 KDRWRTMKKLKLISSDSED 439
KDRWRTMKKLKLISSDSED
Sbjct: 401 KDRWRTMKKLKLISSDSED 419
>gi|169212925 PREDICTED: similar to telomeric repeat binding factor
(NIMA-interacting) 1 [Homo sapiens]
Length = 405
Score = 728 bits (1878), Expect = 0.0
Identities = 378/426 (88%), Positives = 388/426 (91%), Gaps = 25/426 (5%)
Query: 16 ADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDAGLVAEAEA--V 73
ADGRDADPTEEQMAETERNDEEQFECQE L+CQVQVGAPEEEEE DAGLVAEAEA V
Sbjct: 3 ADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEE---DAGLVAEAEAEAV 59
Query: 74 AAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIA 133
AAGWML+FLC SLCRAFRDGRSEDF RTRNSAEAIIHGLSSLTA QLRTIYICQFLTRIA
Sbjct: 60 AAGWMLEFLCFSLCRAFRDGRSEDFCRTRNSAEAIIHGLSSLTAYQLRTIYICQFLTRIA 119
Query: 134 AGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEA 193
AGKTLDAQFENDERITPLESAL+IWGSIEK+HDKL EEIQNLIKIQAIAVCMENGNFKEA
Sbjct: 120 AGKTLDAQFENDERITPLESALIIWGSIEKKHDKLQEEIQNLIKIQAIAVCMENGNFKEA 179
Query: 194 EEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKIKSYVNYVLSEKSS 253
EEVFER+FGDPNS+MP KSKLLMIISQKDTFHSFFQHFSYNHMMEKIKSYVNYVLSEKSS
Sbjct: 180 EEVFERLFGDPNSYMPLKSKLLMIISQKDTFHSFFQHFSYNHMMEKIKSYVNYVLSEKSS 239
Query: 254 TFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDKQSAVTESSEGTVS 313
TFLMKAAAKVVESKRTRTITSQDK +GN VEMETEA+LDTRK
Sbjct: 240 TFLMKAAAKVVESKRTRTITSQDKLNGNYVEMETEASLDTRK------------------ 281
Query: 314 LLRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPE 373
RSHKNLFLSKLQHGTQQQDLNKKERRVGT QSTKKKKESRRATESRIPVSKSQPVTPE
Sbjct: 282 --RSHKNLFLSKLQHGTQQQDLNKKERRVGTLQSTKKKKESRRATESRIPVSKSQPVTPE 339
Query: 374 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI 433
KH+ARKRQAWL EEDKNLRSG+RKYGEGNWSKILLHYKFNNRTSV LKDRWRT KKLKLI
Sbjct: 340 KHQARKRQAWLQEEDKNLRSGMRKYGEGNWSKILLHYKFNNRTSVTLKDRWRTTKKLKLI 399
Query: 434 SSDSED 439
SDSED
Sbjct: 400 CSDSED 405
>gi|89044853 PREDICTED: similar to telomeric repeat binding factor
(NIMA-interacting) 1 [Homo sapiens]
Length = 405
Score = 726 bits (1874), Expect = 0.0
Identities = 378/426 (88%), Positives = 387/426 (90%), Gaps = 25/426 (5%)
Query: 16 ADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDAGLVAEAEA--V 73
ADGRDADPTEEQMAETERNDEEQFECQE L+CQVQVGAPEEEEE DAGLVAEAEA V
Sbjct: 3 ADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEE---DAGLVAEAEAEAV 59
Query: 74 AAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIA 133
AAGWML+FLC SLCRAF DGRSEDF RTRNSAEAIIHGLSSLTA QLRTIYICQFLTRIA
Sbjct: 60 AAGWMLEFLCFSLCRAFPDGRSEDFCRTRNSAEAIIHGLSSLTAYQLRTIYICQFLTRIA 119
Query: 134 AGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEA 193
AGKTLDAQFENDERITPLESAL+IWGSIEK+HDKL EEIQNLIKIQAIAVCMENGNFKEA
Sbjct: 120 AGKTLDAQFENDERITPLESALIIWGSIEKKHDKLQEEIQNLIKIQAIAVCMENGNFKEA 179
Query: 194 EEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKIKSYVNYVLSEKSS 253
EEVFER+FGDPNS+MP KSKLLMIISQKDTFHSFFQHFSYNHMMEKIKSYVNYVLSEKSS
Sbjct: 180 EEVFERLFGDPNSYMPLKSKLLMIISQKDTFHSFFQHFSYNHMMEKIKSYVNYVLSEKSS 239
Query: 254 TFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDKQSAVTESSEGTVS 313
TFLMKAAAKVVESKRTRTITSQDK +GN VEMETEA+LDTRK
Sbjct: 240 TFLMKAAAKVVESKRTRTITSQDKLNGNYVEMETEASLDTRK------------------ 281
Query: 314 LLRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPE 373
RSHKNLFLSKLQHGTQQQDLNKKERRVGT QSTKKKKESRRATESRIPVSKSQPVTPE
Sbjct: 282 --RSHKNLFLSKLQHGTQQQDLNKKERRVGTLQSTKKKKESRRATESRIPVSKSQPVTPE 339
Query: 374 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI 433
KH+ARKRQAWL EEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSV LKDRWRT KKLKLI
Sbjct: 340 KHQARKRQAWLQEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVTLKDRWRTTKKLKLI 399
Query: 434 SSDSED 439
SDSED
Sbjct: 400 CSDSED 405
>gi|239747124 PREDICTED: hypothetical protein XP_002343917 [Homo
sapiens]
Length = 130
Score = 231 bits (588), Expect = 1e-60
Identities = 119/131 (90%), Positives = 121/131 (92%), Gaps = 3/131 (2%)
Query: 16 ADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDAGLVAEAEAVAA 75
ADGRDADPTEEQMAETERNDEEQFECQE L+CQVQVGAPEEEEE DAGLVA+AEAVAA
Sbjct: 3 ADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEE---DAGLVAKAEAVAA 59
Query: 76 GWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAG 135
GWMLDFL SLCRAFRDGRSEDF R RN AEAIIHGLSSLTA QLRTIYICQFLTRIAAG
Sbjct: 60 GWMLDFLRFSLCRAFRDGRSEDFCRIRNRAEAIIHGLSSLTAYQLRTIYICQFLTRIAAG 119
Query: 136 KTLDAQFENDE 146
KTLDAQFENDE
Sbjct: 120 KTLDAQFENDE 130
>gi|5032169 telomeric repeat binding factor 2 [Homo sapiens]
Length = 500
Score = 131 bits (329), Expect = 1e-30
Identities = 120/468 (25%), Positives = 201/468 (42%), Gaps = 108/468 (23%)
Query: 61 EEDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQL 120
E AG EAV W+L F RAFR R DFR+ R+ +A++
Sbjct: 40 ERGAGEARLEEAVNR-WVLKFYFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTVS 98
Query: 121 RTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEH---DKLHEEIQNLIK 177
R + + Q L+RI G+ LD F+ + +TPLESA+ + I+ E + + E + L+K
Sbjct: 99 RLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFTLTEAVVESSRKLVK 158
Query: 178 IQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMM 237
A+ +C++N F++A ++ ++ + ++ LL II +K+ H Q+FSY
Sbjct: 159 EAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNFSYETFQ 218
Query: 238 EKIKSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQD--KPSGNDVE----------- 284
+K+ ++ L + + +L+ A K ++S+ + T ++ +P+ VE
Sbjct: 219 QKMLRFLESHLDD-AEPYLLTMAKKALKSESAASSTGKEDKQPAPGPVEKPPREPARQLR 277
Query: 285 --------METEANLDTRKSVSDKQSAV------------------------------TE 306
M +A T D ++A E
Sbjct: 278 NPPTTIGMMTLKAAFKTLSGAQDSEAAFAKLDQKDLVLPTQALPASPALKNKRPRKDENE 337
Query: 307 SS-----EGTVSLLRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESR 361
SS EG L +K + +S+L ++D E G S +E+ A S+
Sbjct: 338 SSAPADGEGGSELQPKNKRMTISRL---VLEEDSQSTEPSAGLNSS----QEAASAPPSK 390
Query: 362 IPVSKSQPVTPEK------------HRARKRQAWL------------------------- 384
P +QP+ EK + +++ W+
Sbjct: 391 -PTVLNQPLPGEKNPKVPKGKWNSSNGVEEKETWVEEDELFQVQAAPDEDSTTNITKKQK 449
Query: 385 W--EEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 430
W EE + +++GV+KYGEGNW+ I +Y F NRT+VM+KDRWRTMK+L
Sbjct: 450 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 497
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 42.4 bits (98), Expect = 8e-04
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 3 EDVSSAAPSPRGCADGRDA---DPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEE 59
E V + A +G +D R++ + E+ E E D+E E QE EC+ G EEEEE
Sbjct: 993 EHVGARASPSQGDSDERESLTREEDEDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEE 1052
Query: 60 EEE-DAGLVAEAE 71
EEE + V EAE
Sbjct: 1053 EEEVEEEEVEEAE 1065
>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
sapiens]
Length = 1124
Score = 42.4 bits (98), Expect = 8e-04
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 3 EDVSSAAPSPRGCADGRDA---DPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEE 59
E V + A +G +D R++ + E+ E E D+E E QE EC+ G EEEEE
Sbjct: 1009 EHVGARASPSQGDSDERESLTREEDEDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEE 1068
Query: 60 EEE-DAGLVAEAE 71
EEE + V EAE
Sbjct: 1069 EEEVEEEEVEEAE 1081
>gi|4505293 MYB-related protein B [Homo sapiens]
Length = 700
Score = 40.8 bits (94), Expect = 0.002
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 372 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 424
PE+ ++ + W EED+ LR+ VR++G+ +W + H F NRT + RW
Sbjct: 23 PEQRDSKCKVKWTHEEDEQLRALVRQFGQQDWKFLASH--FPNRTDQQCQYRW 73
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 383 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 424
W EED+ + V+KYG W+ I H K R ++RW
Sbjct: 86 WTKEEDQKVIELVKKYGTKQWTLIAKHLK--GRLGKQCRERW 125
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 38.5 bits (88), Expect = 0.012
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 16 ADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDAGLVAEAEAV 73
A+G++ + EE+ E E DEE+ E +E E + + EEEEEEEE A VA E +
Sbjct: 729 ANGKEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEE----EEEEEEEEAAAAVALGEVL 782
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 38.1 bits (87), Expect = 0.016
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 3 EDVSSAAPSP-RGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEE 61
ED +S S +G + D EE+ E E DEE+ E +E E + + EEEEEEE
Sbjct: 241 EDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEE 300
Query: 62 ED 63
E+
Sbjct: 301 EE 302
Score = 33.9 bits (76), Expect = 0.30
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 17 DGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDA 64
+ + + EE+ E E +EE+ E +E E + + EEEEEEEE+A
Sbjct: 260 EDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEA 307
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 38.1 bits (87), Expect = 0.016
Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 250 EKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDKQSAVTESSE 309
E S + + ++ +++ ESK + K S N +E + E + K ++ ++ + +E
Sbjct: 607 ELSKSEMKQSESRLAESKPNENRLVETKSSENKLETKVETQTEELKQ-NESRTTECKQNE 665
Query: 310 GTVSLLRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQP 369
T+ + ++N LS + +Q+ + E P++ K+K ESR T + S P
Sbjct: 666 STIVEPKQNENR-LSDTKPNDNKQNNGRSETTKSRPETPKQKGESRPETPKQ--KSDGHP 722
Query: 370 VTPEK 374
TP++
Sbjct: 723 ETPKQ 727
Score = 30.0 bits (66), Expect = 4.3
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 245 NYVLSEKSSTFLM--KAAAKVVESKRTRTITSQDKPSGNDV--EMETEANLDTRKSVSDK 300
N ++ KSS + K + E K+ + T++ K + + + + E L K +K
Sbjct: 628 NRLVETKSSENKLETKVETQTEELKQNESRTTECKQNESTIVEPKQNENRLSDTKPNDNK 687
Query: 301 QSAVTESSEGTVSLLRSHKNLFLSKLQHGTQQQDLNK---KERRVGTPQSTKKKKESRRA 357
Q+ SE T S + K S+ + Q+ D + K++ G P++ K+K ESR
Sbjct: 688 QN--NGRSETTKSRPETPKQKGESRPETPKQKSDGHPETPKQKGDGRPETPKQKGESRPE 745
Query: 358 TESRIPVSKSQPVTPEKHRARKRQ 381
T + ++ +P TP KHR R+
Sbjct: 746 TPKQ--KNEGRPETP-KHRHDNRR 766
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 38.1 bits (87), Expect = 0.016
Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 250 EKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDKQSAVTESSE 309
E S + + ++ +++ ESK + K S N +E + E + K ++ ++ + +E
Sbjct: 607 ELSKSEMKQSESRLAESKPNENRLVETKSSENKLETKVETQTEELKQ-NESRTTECKQNE 665
Query: 310 GTVSLLRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQP 369
T+ + ++N LS + +Q+ + E P++ K+K ESR T + S P
Sbjct: 666 STIVEPKQNENR-LSDTKPNDNKQNNGRSETTKSRPETPKQKGESRPETPKQ--KSDGHP 722
Query: 370 VTPEK 374
TP++
Sbjct: 723 ETPKQ 727
Score = 30.0 bits (66), Expect = 4.3
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 245 NYVLSEKSSTFLM--KAAAKVVESKRTRTITSQDKPSGNDV--EMETEANLDTRKSVSDK 300
N ++ KSS + K + E K+ + T++ K + + + + E L K +K
Sbjct: 628 NRLVETKSSENKLETKVETQTEELKQNESRTTECKQNESTIVEPKQNENRLSDTKPNDNK 687
Query: 301 QSAVTESSEGTVSLLRSHKNLFLSKLQHGTQQQDLNK---KERRVGTPQSTKKKKESRRA 357
Q+ SE T S + K S+ + Q+ D + K++ G P++ K+K ESR
Sbjct: 688 QN--NGRSETTKSRPETPKQKGESRPETPKQKSDGHPETPKQKGDGRPETPKQKGESRPE 745
Query: 358 TESRIPVSKSQPVTPEKHRARKRQ 381
T + ++ +P TP KHR R+
Sbjct: 746 TPKQ--KNEGRPETP-KHRHDNRR 766
>gi|4505917 exosome component 10 isoform 2 [Homo sapiens]
Length = 860
Score = 38.1 bits (87), Expect = 0.016
Identities = 50/232 (21%), Positives = 96/232 (41%), Gaps = 23/232 (9%)
Query: 161 IEKEHDKLHEEIQN-----LIKIQAIAVCMENGNFKEAEEVFERIFGDPN-SHMPFKSKL 214
+ ++ +++H IQ L+K + A ++G AE + +FG + SH P
Sbjct: 562 VRQQINEMHLLIQQAREMPLLKSEVAAGVKKSGPLPSAERLENVLFGPHDCSHAPPDGYP 621
Query: 215 LMIIS-----QKDTFHSFFQHFSYNHMMEK---IKSYVNYVLSEKSSTFLMKAAAKVVES 266
++ S QK S F ++++ I + V + +E S+ K V +
Sbjct: 622 IIPTSGSVPVQKQA--SLFPDEKEDNLLGTTCLIATAVITLFNEPSAEDSKKGPLTVAQK 679
Query: 267 KRTRTITSQDKP----SGNDVEMETEANLDTRKSVSDKQSAVTESSEGTVSLLRSHKNLF 322
K + S + P S + + D++++V K + T + E ++
Sbjct: 680 KAQNIMESFENPFRMISNRWKLAQVQVQKDSKEAVKKKAAEQTAAREQAKEACKAAAEQA 739
Query: 323 LSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPEK 374
+S Q + K+ER P++T++K+E +R S+ P P PEK
Sbjct: 740 ISVRQQVVLENAAKKRERATSDPRTTEQKQEKKRLKISKKP---KDPEPPEK 788
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 37.0 bits (84), Expect = 0.036
Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 37/227 (16%)
Query: 188 GNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ--KDTFHSFF-------QHFSYNHMM- 237
GN + E ++ F D + + + L+ ++ KDT S F H +H++
Sbjct: 82 GNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVF 141
Query: 238 -------EKIKSYVNYVLSEKSSTF-----------LMKAAAKVVESKRTRTITSQDKPS 279
E ++ N S F + K+ K E KR ++ +S S
Sbjct: 142 GQVISGQEVVREIENQKTDAASKPFAEVRILSCGELIPKSKVKKEEKKRHKSSSSSSSSS 201
Query: 280 GN-DVEMETEANLDTRKSVSDKQSAVTESSEGTVSL----LRSHKNLFLSKLQHGTQQQD 334
+ D +++++ D+ SD +SA E S+ R HK + +
Sbjct: 202 SDSDSSSDSQSSSDS----SDSESATEEKSKKRKKKHRKNSRKHKKEKKKRKKSKKSASS 257
Query: 335 LNKKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPEKHRARKRQ 381
++ E PQST + +E E+R + KS P EK R + +
Sbjct: 258 ESEAENLEAQPQSTVRPEEIPPIPENRFLMRKSPPKADEKERKNRER 304
>gi|122937227 U2-associated SR140 protein [Homo sapiens]
Length = 1029
Score = 37.0 bits (84), Expect = 0.036
Identities = 30/151 (19%), Positives = 62/151 (41%), Gaps = 8/151 (5%)
Query: 238 EKIKSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDV--------EMETEA 289
E+++ Y + +L + L + + + K S+DK ++ + +
Sbjct: 873 EQVEHYRDKLLQREKEKELERERERDKKDKEKLESRSKDKKEKDECTPTRKERKRRHSTS 932
Query: 290 NLDTRKSVSDKQSAVTESSEGTVSLLRSHKNLFLSKLQHGTQQQDLNKKERRVGTPQSTK 349
+R S + + + SE + RSHK S+ H +D++KK +R + T
Sbjct: 933 PSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSKKAKRSPSGSRTP 992
Query: 350 KKKESRRATESRIPVSKSQPVTPEKHRARKR 380
K+ R+ + KS+ + HR+ K+
Sbjct: 993 KRSRRSRSRSPKKSGKKSRSQSRSPHRSHKK 1023
>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 36.6 bits (83), Expect = 0.046
Identities = 36/178 (20%), Positives = 76/178 (42%), Gaps = 11/178 (6%)
Query: 262 KVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDKQSAVTESSEGTVSLLRSHKNL 321
K + RT++S+++P +++ A + K+ DK+ + + R K+
Sbjct: 21 KEKDCSERRTVSSKERPKD---DIKLTAKKEVSKAPEDKKKRLEDDKRKKEDKERKKKDE 77
Query: 322 FLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPEKHRARKRQ 381
K + +++++ +K++ Q ++KK+ +A + + +Q E+ ++
Sbjct: 78 EKVKAEEESKKKEEEEKKKH----QEEERKKQEEQAKRQQEEEAAAQMKEKEESIQLHQE 133
Query: 382 AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSED 439
AW E +LR +R + N F +R LK +KKLK I+ D
Sbjct: 134 AW---ERHHLRKELRSKNQ-NAPDSRPEENFFSRLDSSLKKNTAFVKKLKTITEQQRD 187
Score = 30.0 bits (66), Expect = 4.3
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 17 DGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDAGLVAEAEAVAAG 76
D +D+ E + E E +E E +E + +V PEEEE + D E E
Sbjct: 1018 DSKDSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTD 1077
Query: 77 WMLD 80
++ D
Sbjct: 1078 YLTD 1081
>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 36.6 bits (83), Expect = 0.046
Identities = 36/178 (20%), Positives = 76/178 (42%), Gaps = 11/178 (6%)
Query: 262 KVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDKQSAVTESSEGTVSLLRSHKNL 321
K + RT++S+++P +++ A + K+ DK+ + + R K+
Sbjct: 21 KEKDCSERRTVSSKERPKD---DIKLTAKKEVSKAPEDKKKRLEDDKRKKEDKERKKKDE 77
Query: 322 FLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPEKHRARKRQ 381
K + +++++ +K++ Q ++KK+ +A + + +Q E+ ++
Sbjct: 78 EKVKAEEESKKKEEEEKKKH----QEEERKKQEEQAKRQQEEEAAAQMKEKEESIQLHQE 133
Query: 382 AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSED 439
AW E +LR +R + N F +R LK +KKLK I+ D
Sbjct: 134 AW---ERHHLRKELRSKNQ-NAPDSRPEENFFSRLDSSLKKNTAFVKKLKTITEQQRD 187
Score = 30.0 bits (66), Expect = 4.3
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 17 DGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDAGLVAEAEAVAAG 76
D +D+ E + E E +E E +E + +V PEEEE + D E E
Sbjct: 1018 DSKDSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTD 1077
Query: 77 WMLD 80
++ D
Sbjct: 1078 YLTD 1081
>gi|239735496 v-myb myeloblastosis viral oncogene homolog isoform 8
[Homo sapiens]
Length = 605
Score = 36.2 bits (82), Expect = 0.061
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 369 PVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 428
P + ++H + R W EED+ L+ V + G +W K++ +Y NRT V + RW+ +
Sbjct: 31 PKSGKRHLGKTR--WTREEDEKLKKLVEQNGTDDW-KVIANY-LPNRTDVQCQHRWQKVL 86
Query: 429 KLKLI 433
+LI
Sbjct: 87 NPELI 91
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 383 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 424
W EED+ + V+KYG WS I H K R ++RW
Sbjct: 95 WTKEEDQRVIELVQKYGPKRWSVIAKHLK--GRIGKQCRERW 134
>gi|239735494 v-myb myeloblastosis viral oncogene homolog isoform 7
[Homo sapiens]
Length = 603
Score = 36.2 bits (82), Expect = 0.061
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 369 PVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 428
P + ++H + R W EED+ L+ V + G +W K++ +Y NRT V + RW+ +
Sbjct: 31 PKSGKRHLGKTR--WTREEDEKLKKLVEQNGTDDW-KVIANY-LPNRTDVQCQHRWQKVL 86
Query: 429 KLKLI 433
+LI
Sbjct: 87 NPELI 91
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 383 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 424
W EED+ + V+KYG WS I H K R ++RW
Sbjct: 95 WTKEEDQRVIELVQKYGPKRWSVIAKHLK--GRIGKQCRERW 134
>gi|239735492 v-myb myeloblastosis viral oncogene homolog isoform 6
[Homo sapiens]
Length = 745
Score = 36.2 bits (82), Expect = 0.061
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 369 PVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 428
P + ++H + R W EED+ L+ V + G +W K++ +Y NRT V + RW+ +
Sbjct: 31 PKSGKRHLGKTR--WTREEDEKLKKLVEQNGTDDW-KVIANY-LPNRTDVQCQHRWQKVL 86
Query: 429 KLKLI 433
+LI
Sbjct: 87 NPELI 91
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 383 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 424
W EED+ + V+KYG WS I H K R ++RW
Sbjct: 95 WTKEEDQRVIELVQKYGPKRWSVIAKHLK--GRIGKQCRERW 134
>gi|239735490 v-myb myeloblastosis viral oncogene homolog isoform 5
[Homo sapiens]
Length = 555
Score = 36.2 bits (82), Expect = 0.061
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 369 PVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 428
P + ++H + R W EED+ L+ V + G +W K++ +Y NRT V + RW+ +
Sbjct: 31 PKSGKRHLGKTR--WTREEDEKLKKLVEQNGTDDW-KVIANY-LPNRTDVQCQHRWQKVL 86
Query: 429 KLKLI 433
+LI
Sbjct: 87 NPELI 91
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 383 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 424
W EED+ + V+KYG WS I H K R ++RW
Sbjct: 95 WTKEEDQRVIELVQKYGPKRWSVIAKHLK--GRIGKQCRERW 134
>gi|239735488 v-myb myeloblastosis viral oncogene homolog isoform 4
[Homo sapiens]
Length = 758
Score = 36.2 bits (82), Expect = 0.061
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 369 PVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 428
P + ++H + R W EED+ L+ V + G +W K++ +Y NRT V + RW+ +
Sbjct: 31 PKSGKRHLGKTR--WTREEDEKLKKLVEQNGTDDW-KVIANY-LPNRTDVQCQHRWQKVL 86
Query: 429 KLKLI 433
+LI
Sbjct: 87 NPELI 91
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 383 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 424
W EED+ + V+KYG WS I H K R ++RW
Sbjct: 95 WTKEEDQRVIELVQKYGPKRWSVIAKHLK--GRIGKQCRERW 134
>gi|46361980 v-myb myeloblastosis viral oncogene homolog isoform 2
[Homo sapiens]
Length = 640
Score = 36.2 bits (82), Expect = 0.061
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 369 PVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 428
P + ++H + R W EED+ L+ V + G +W K++ +Y NRT V + RW+ +
Sbjct: 31 PKSGKRHLGKTR--WTREEDEKLKKLVEQNGTDDW-KVIANY-LPNRTDVQCQHRWQKVL 86
Query: 429 KLKLI 433
+LI
Sbjct: 87 NPELI 91
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 383 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 424
W EED+ + V+KYG WS I H K R ++RW
Sbjct: 95 WTKEEDQRVIELVQKYGPKRWSVIAKHLK--GRIGKQCRERW 134
>gi|194328729 v-myb myeloblastosis viral oncogene homolog isoform 1
[Homo sapiens]
Length = 761
Score = 36.2 bits (82), Expect = 0.061
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 369 PVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 428
P + ++H + R W EED+ L+ V + G +W K++ +Y NRT V + RW+ +
Sbjct: 31 PKSGKRHLGKTR--WTREEDEKLKKLVEQNGTDDW-KVIANY-LPNRTDVQCQHRWQKVL 86
Query: 429 KLKLI 433
+LI
Sbjct: 87 NPELI 91
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 383 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 424
W EED+ + V+KYG WS I H K R ++RW
Sbjct: 95 WTKEEDQRVIELVQKYGPKRWSVIAKHLK--GRIGKQCRERW 134
>gi|194328727 v-myb myeloblastosis viral oncogene homolog isoform 3
[Homo sapiens]
Length = 637
Score = 36.2 bits (82), Expect = 0.061
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 369 PVTPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 428
P + ++H + R W EED+ L+ V + G +W K++ +Y NRT V + RW+ +
Sbjct: 31 PKSGKRHLGKTR--WTREEDEKLKKLVEQNGTDDW-KVIANY-LPNRTDVQCQHRWQKVL 86
Query: 429 KLKLI 433
+LI
Sbjct: 87 NPELI 91
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 383 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 424
W EED+ + V+KYG WS I H K R ++RW
Sbjct: 95 WTKEEDQRVIELVQKYGPKRWSVIAKHLK--GRIGKQCRERW 134
>gi|87298939 hypothetical protein LOC131831 [Homo sapiens]
Length = 663
Score = 36.2 bits (82), Expect = 0.061
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 9 APSPRGCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDAGLVA 68
+PS G +D +EE++ E E +E + E +E+ E + +V EEE EEE G
Sbjct: 6 SPSGFGDPGKKDQKESEEELEEEEEEEEVEEEEEEVEEEEEEVEEEEEEVVEEELVGEEQ 65
Query: 69 EAEA 72
E EA
Sbjct: 66 ELEA 69
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 36.2 bits (82), Expect = 0.061
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 265 ESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDKQSAVTESSEGTVSLLRSHKNLFLS 324
E +R+R + + + G E + + + D R+ DK+ + E S R K+ S
Sbjct: 381 ERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSR-SRSRERKHRSRS 439
Query: 325 KLQHGTQQQDLNKKERRVGTPQSTKKK--KESRRATESR---IPVSKSQPVTPEKHRARK 379
+ ++ ++ KE+ +K+K K SR ++ R + SK + +P K ++RK
Sbjct: 440 RSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRK 499
Query: 380 R 380
R
Sbjct: 500 R 500
Score = 30.4 bits (67), Expect = 3.3
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 267 KRTRTITSQDKPSGNDVEMETEANLDTRKSVSDKQSAVTESSEGTVSLLRSHKNLFLSKL 326
++ +T + K G + E + +++ R+S S ++S S S RSH +
Sbjct: 231 QQIKTRPRKIKKDGKEGAEEIDRHVERRRSRSPRRSLSPRRSPRR-SRSRSHH-----RE 284
Query: 327 QHGTQQQDLN---KKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPEKHRARKR 380
HG+ D +KER+ ++ +++KE RR+ + + + + E+HR+R R
Sbjct: 285 GHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRSR 341
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform
3 [Homo sapiens]
Length = 2059
Score = 36.2 bits (82), Expect = 0.061
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 19 RDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDAGLV 67
RD + EE+M +E +EE+ E E E + +V A +E++EE++D G++
Sbjct: 6 RDEEEEEEEMVVSEEEEEEEEEGDE--EEEEEVEAADEDDEEDDDEGVL 52
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 35.8 bits (81), Expect = 0.079
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 17 DGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAP------EEEEEEEE 62
+G +E+ E ++ +EE+ E +E E + +VGAP EEEEEEEE
Sbjct: 524 EGHGLSLNQEEEEEEDKEEEEEEEDEERREERAEVGAPLSPDHSEEEEEEEE 575
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.127 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,331,125
Number of Sequences: 37866
Number of extensions: 746627
Number of successful extensions: 6453
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 5081
Number of HSP's gapped (non-prelim): 1053
length of query: 439
length of database: 18,247,518
effective HSP length: 105
effective length of query: 334
effective length of database: 14,271,588
effective search space: 4766710392
effective search space used: 4766710392
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.